| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is coxL [H]
Identifier: 146341491
GI number: 146341491
Start: 4779297
End: 4781672
Strand: Reverse
Name: coxL [H]
Synonym: BRADO4584
Alternate gene names: 146341491
Gene position: 4781672-4779297 (Counterclockwise)
Preceding gene: 146341492
Following gene: 146341490
Centisome position: 64.13
GC content: 66.37
Gene sequence:
>2376_bases ATGACCGCGCCGCTGACATCGCTGGATCGTCCCAATTCCTATATCGGCCGCTCTGTCCCACGCCCGAATGCCAAGCGGCT GCTGGCGGGGCGCGGGCGCTACGTCACCGATCTCCGCCTGCCGCGCATGCTTCATGCGGCCTTTTTGCGCAGCCCACATG CGCATGCGCGCATTCTCAGCATCGACATCGAAGCTGCGCGCGCGCTGGCCGGAGTGCATCTGGTCGCGACCGGCGCAGAC CTGGCCAGGATCTGCACGCCCTGGACAGGAACGCTCGATCATTTCAAGGGGATGGTCTCGGAGCCGCAGCTGCCATTGCC GCTCGATCGCGTTGTATGGGCCGGCCAAGCCGTGGTCGCTGTGGTCGCCGAGAGCAGGGCGGTCGCGGAGGACGCGCTGG AGCTGATCGCGGTCGACTACGAGGAGCTGCCGGCGGTGGTCGATCTCGACGCCGCGCGCGCACCCGACGCTCCCACGGTC AACCCGGCCGCATCGTCCAACATCTGCTTCCGCGCCCAGCTCGATAGCGGCGGTGTCGACGAGGCCTTTGCGTCCGCGGC TCACGTCGTCGAGCAGGAGTTCAGCTTTGGCCGGCACACGCCTGTCACGCTGGAGCCACGCGCCGTCGTCGCCGACTACG AGTCCGACACCGGCATGCTGACGGTGCACCACGCGACGCAGACGCCGTATCAGTTCCAGGATCTGTATTCACGCCACTAC GGCATCCCTGAAGCGCGCGTGCGCGTGATCGCGCCCGACATCGGCGGCTCGTTCGGGATGAAGCTGCACGTCTATCACGA GGACATGGCGGTGGTCGGGCTGTCGATCCTGCTCGGGCGTCCGGTGAAGTATGTCGCCGACCGGATCGAGTCGTTCGTCT CCGACATCCATGCCCGCGATCACCACGTGCGGGCGCGCATGGCGGTCGACGCCGACGGCAAGATCCTCGCCATGGACATC CATGACGCCACCGCGGTCGGCGCCTTCTCGACCTATCCGCGCACCAGCGTGGTCGAGGGCAACCAGGTGATCCGCCTGAT CGGCGCGCCCTATGATTTCAAGTCGTATCGGGCGGTGCTGGAGGTCGTGTTTCAGAACAAGGTGCAGACCAGTCAATATC GCGCCGTCGGCCATCCCATCGCCTGCGCCGTCACCGAGCGCATGGTGGATCTTGCCGCGGAACGCATCGGCGCCGATCCC CTCGCGATGCGCGCCAGGAACGTGATCGCCGACGATGCCTATCCAACGGCGTCCCCGACCGGCTACAAGTTCGAAGCGCT CTCGCACGAGGCTTGCCTGCGGCGCTTGCGCGAGATCATGAGCTACGACGGATTGCGCGCCGAGCAGGCGGAGCTGCGCC GGCGCGGTGTCCACCGCGGCATCGGTATCGCGACCTTCGTCGAAATCACCAATCCGAGTCCGGCCTTCTATGGCGTCGGC GGCGCCCGTATCTCCTCGCAGGACGGCGCGACGCTCAGCCTCACGCCGTCCGGCGAGGTGCGCTGCGCCATCTCGGTCAC CGAGCAGGGGCAGGGCACCGAGGCGATCATCGGCCAGATCGTCGCCGATCAGCTCGGTCTCGCCCAGGAGCACGTGAAGA TCATCACCGGCGATACCGAAGTCACGCCGCATGGCGGTGCGACCTGGGCCTGTCGCGGCGCCGGCATCGGCGGCGAGACC GCGCTGCAGGCCGCGCGGCAGCTCAAGGCCAATATCGTGGAGATCGCCGCTCTGATCCTGCAGGAGCGGCCGGCCGCACT CGACATCGTCGATGGGCAAGTCGTGGGCAAGGCGACCCGGCAGCCGCGCATCCCGGTCGCCGAAATCGCGCGCATCGCCT ATTTCCGCTCGGACACGCTGCCGCCGGGTACGCAGGCGCAGCTGACCGTCAGCCATCACTTCGCGCCGCAGGGCTATCCC TTCGCGTTCACGAATGGCGTGCAGGGCTGCTATCTCGAGGTCGACACAGACACCGGCTTGATCAAGCTGTTGAAGCACTA CGTCGTCGAGGATTGCGGCCGCATCATCAATCCGATGCTGGTCGACGAGCAGCTGCGGGGCGGCGTCGTGCAGGGATTGG GTGCGGCGCTGTTCGAGGAATGCCGTTATAGTGAGACCGGCCAATTGCTGAACGGCTCGTTGGCTGATTATCTCGTGCCG ATGGCGATGGAGATGCCGGATATCGTCATCGACCACGTCGAGACGCCGACGGCGGACACCATTCTGGGCGCGAAAGGATG CGGCGAGGCCGGCACGGCGGCGGCATCGGCCTGCGTGCTCAATGCGGTGAATGACGCGCTGACGCCGTTCGGCGCATCCA TCAATGCCATTCCGATCACGCCTGCGCGCGTGCTCAAGTCGCTCAATCAATACTAA
Upstream 100 bases:
>100_bases CCGGCAATTTCTGCCGCTGCACCGGATACGAGGCGATCGTCGATTCCATTGCCGCCGTTGCCGAGGCGCGTGCGGCAAAG GCCGCCGAGGGGCCGTCGCG
Downstream 100 bases:
>100_bases ACAAAACAAGATGAGGGAGGACATCATGCCAGGCTTCGAGACCAAGCTGCGACCTGCCGGACTATCCCGCCGCAAGGCAT TGATGGCCATGTCGGCGGGC
Product: putative carbon-monoxide dehydrogenase large subunit, coxL-like protein
Products: NA
Alternate protein names: CO dehydrogenase subunit L; CO-DH L [H]
Number of amino acids: Translated: 791; Mature: 790
Protein sequence:
>791_residues MTAPLTSLDRPNSYIGRSVPRPNAKRLLAGRGRYVTDLRLPRMLHAAFLRSPHAHARILSIDIEAARALAGVHLVATGAD LARICTPWTGTLDHFKGMVSEPQLPLPLDRVVWAGQAVVAVVAESRAVAEDALELIAVDYEELPAVVDLDAARAPDAPTV NPAASSNICFRAQLDSGGVDEAFASAAHVVEQEFSFGRHTPVTLEPRAVVADYESDTGMLTVHHATQTPYQFQDLYSRHY GIPEARVRVIAPDIGGSFGMKLHVYHEDMAVVGLSILLGRPVKYVADRIESFVSDIHARDHHVRARMAVDADGKILAMDI HDATAVGAFSTYPRTSVVEGNQVIRLIGAPYDFKSYRAVLEVVFQNKVQTSQYRAVGHPIACAVTERMVDLAAERIGADP LAMRARNVIADDAYPTASPTGYKFEALSHEACLRRLREIMSYDGLRAEQAELRRRGVHRGIGIATFVEITNPSPAFYGVG GARISSQDGATLSLTPSGEVRCAISVTEQGQGTEAIIGQIVADQLGLAQEHVKIITGDTEVTPHGGATWACRGAGIGGET ALQAARQLKANIVEIAALILQERPAALDIVDGQVVGKATRQPRIPVAEIARIAYFRSDTLPPGTQAQLTVSHHFAPQGYP FAFTNGVQGCYLEVDTDTGLIKLLKHYVVEDCGRIINPMLVDEQLRGGVVQGLGAALFEECRYSETGQLLNGSLADYLVP MAMEMPDIVIDHVETPTADTILGAKGCGEAGTAAASACVLNAVNDALTPFGASINAIPITPARVLKSLNQY
Sequences:
>Translated_791_residues MTAPLTSLDRPNSYIGRSVPRPNAKRLLAGRGRYVTDLRLPRMLHAAFLRSPHAHARILSIDIEAARALAGVHLVATGAD LARICTPWTGTLDHFKGMVSEPQLPLPLDRVVWAGQAVVAVVAESRAVAEDALELIAVDYEELPAVVDLDAARAPDAPTV NPAASSNICFRAQLDSGGVDEAFASAAHVVEQEFSFGRHTPVTLEPRAVVADYESDTGMLTVHHATQTPYQFQDLYSRHY GIPEARVRVIAPDIGGSFGMKLHVYHEDMAVVGLSILLGRPVKYVADRIESFVSDIHARDHHVRARMAVDADGKILAMDI HDATAVGAFSTYPRTSVVEGNQVIRLIGAPYDFKSYRAVLEVVFQNKVQTSQYRAVGHPIACAVTERMVDLAAERIGADP LAMRARNVIADDAYPTASPTGYKFEALSHEACLRRLREIMSYDGLRAEQAELRRRGVHRGIGIATFVEITNPSPAFYGVG GARISSQDGATLSLTPSGEVRCAISVTEQGQGTEAIIGQIVADQLGLAQEHVKIITGDTEVTPHGGATWACRGAGIGGET ALQAARQLKANIVEIAALILQERPAALDIVDGQVVGKATRQPRIPVAEIARIAYFRSDTLPPGTQAQLTVSHHFAPQGYP FAFTNGVQGCYLEVDTDTGLIKLLKHYVVEDCGRIINPMLVDEQLRGGVVQGLGAALFEECRYSETGQLLNGSLADYLVP MAMEMPDIVIDHVETPTADTILGAKGCGEAGTAAASACVLNAVNDALTPFGASINAIPITPARVLKSLNQY >Mature_790_residues TAPLTSLDRPNSYIGRSVPRPNAKRLLAGRGRYVTDLRLPRMLHAAFLRSPHAHARILSIDIEAARALAGVHLVATGADL ARICTPWTGTLDHFKGMVSEPQLPLPLDRVVWAGQAVVAVVAESRAVAEDALELIAVDYEELPAVVDLDAARAPDAPTVN PAASSNICFRAQLDSGGVDEAFASAAHVVEQEFSFGRHTPVTLEPRAVVADYESDTGMLTVHHATQTPYQFQDLYSRHYG IPEARVRVIAPDIGGSFGMKLHVYHEDMAVVGLSILLGRPVKYVADRIESFVSDIHARDHHVRARMAVDADGKILAMDIH DATAVGAFSTYPRTSVVEGNQVIRLIGAPYDFKSYRAVLEVVFQNKVQTSQYRAVGHPIACAVTERMVDLAAERIGADPL AMRARNVIADDAYPTASPTGYKFEALSHEACLRRLREIMSYDGLRAEQAELRRRGVHRGIGIATFVEITNPSPAFYGVGG ARISSQDGATLSLTPSGEVRCAISVTEQGQGTEAIIGQIVADQLGLAQEHVKIITGDTEVTPHGGATWACRGAGIGGETA LQAARQLKANIVEIAALILQERPAALDIVDGQVVGKATRQPRIPVAEIARIAYFRSDTLPPGTQAQLTVSHHFAPQGYPF AFTNGVQGCYLEVDTDTGLIKLLKHYVVEDCGRIINPMLVDEQLRGGVVQGLGAALFEECRYSETGQLLNGSLADYLVPM AMEMPDIVIDHVETPTADTILGAKGCGEAGTAAASACVLNAVNDALTPFGASINAIPITPARVLKSLNQY
Specific function: Catalyzes the oxidation of carbon monoxide to carbon dioxide [H]
COG id: COG1529
COG function: function code C; Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI71773480, Length=768, Percent_Identity=24.21875, Blast_Score=158, Evalue=2e-38, Organism=Homo sapiens, GI91823271, Length=774, Percent_Identity=22.609819121447, Blast_Score=135, Evalue=1e-31, Organism=Escherichia coli, GI1789230, Length=785, Percent_Identity=29.2993630573248, Blast_Score=271, Evalue=1e-73, Organism=Escherichia coli, GI1789246, Length=833, Percent_Identity=25.2100840336134, Blast_Score=192, Evalue=8e-50, Organism=Escherichia coli, GI1786478, Length=791, Percent_Identity=23.6409608091024, Blast_Score=119, Evalue=7e-28, Organism=Caenorhabditis elegans, GI17540638, Length=733, Percent_Identity=23.0559345156889, Blast_Score=125, Evalue=6e-29, Organism=Drosophila melanogaster, GI17737937, Length=736, Percent_Identity=26.3586956521739, Blast_Score=148, Evalue=2e-35, Organism=Drosophila melanogaster, GI24647199, Length=778, Percent_Identity=22.7506426735219, Blast_Score=111, Evalue=2e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000674 - InterPro: IPR008274 - InterPro: IPR012780 [H]
Pfam domain/function: PF01315 Ald_Xan_dh_C; PF02738 Ald_Xan_dh_C2 [H]
EC number: =1.2.99.2 [H]
Molecular weight: Translated: 84871; Mature: 84739
Theoretical pI: Translated: 6.07; Mature: 6.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAPLTSLDRPNSYIGRSVPRPNAKRLLAGRGRYVTDLRLPRMLHAAFLRSPHAHARILS CCCCCCCCCCCCHHHCCCCCCCCHHHHHHCCCCEEEHHHHHHHHHHHHHCCCCCCEEEEE IDIEAARALAGVHLVATGADLARICTPWTGTLDHFKGMVSEPQLPLPLDRVVWAGQAVVA EEHHHHHHHHCEEEEECCCHHHHHCCCCCCCHHHHHHHHCCCCCCCCHHHHHHCCCHHEE VVAESRAVAEDALELIAVDYEELPAVVDLDAARAPDAPTVNPAASSNICFRAQLDSGGVD HHHHHHHHHHHHHHHHHCCHHHCCCEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCH EAFASAAHVVEQEFSFGRHTPVTLEPRAVVADYESDTGMLTVHHATQTPYQFQDLYSRHY HHHHHHHHHHHHHHCCCCCCCEEECCCEEEEECCCCCCEEEEEECCCCCHHHHHHHHHHC GIPEARVRVIAPDIGGSFGMKLHVYHEDMAVVGLSILLGRPVKYVADRIESFVSDIHARD CCCCCEEEEEECCCCCCCCCEEEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC HHVRARMAVDADGKILAMDIHDATAVGAFSTYPRTSVVEGNQVIRLIGAPYDFKSYRAVL HHEEEEEEECCCCCEEEEECCCCHHCCCCCCCCCCEEECCCCEEEEECCCCCHHHHHHHH EVVFQNKVQTSQYRAVGHPIACAVTERMVDLAAERIGADPLAMRARNVIADDAYPTASPT HHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCC GYKFEALSHEACLRRLREIMSYDGLRAEQAELRRRGVHRGIGIATFVEITNPSPAFYGVG CEEEHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEECC GARISSQDGATLSLTPSGEVRCAISVTEQGQGTEAIIGQIVADQLGLAQEHVKIITGDTE CCEECCCCCCEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCE VTPHGGATWACRGAGIGGETALQAARQLKANIVEIAALILQERPAALDIVDGQVVGKATR ECCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEECCCCC QPRIPVAEIARIAYFRSDTLPPGTQAQLTVSHHFAPQGYPFAFTNGVQGCYLEVDTDTGL CCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCEEEECCCCEEEEEEECCCHH IKLLKHYVVEDCGRIINPMLVDEQLRGGVVQGLGAALFEECRYSETGQLLNGSLADYLVP HHHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHH MAMEMPDIVIDHVETPTADTILGAKGCGEAGTAAASACVLNAVNDALTPFGASINAIPIT HHHCCCHHHHHCCCCCCCHHEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEECCC PARVLKSLNQY HHHHHHHHHCC >Mature Secondary Structure TAPLTSLDRPNSYIGRSVPRPNAKRLLAGRGRYVTDLRLPRMLHAAFLRSPHAHARILS CCCCCCCCCCCHHHCCCCCCCCHHHHHHCCCCEEEHHHHHHHHHHHHHCCCCCCEEEEE IDIEAARALAGVHLVATGADLARICTPWTGTLDHFKGMVSEPQLPLPLDRVVWAGQAVVA EEHHHHHHHHCEEEEECCCHHHHHCCCCCCCHHHHHHHHCCCCCCCCHHHHHHCCCHHEE VVAESRAVAEDALELIAVDYEELPAVVDLDAARAPDAPTVNPAASSNICFRAQLDSGGVD HHHHHHHHHHHHHHHHHCCHHHCCCEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCH EAFASAAHVVEQEFSFGRHTPVTLEPRAVVADYESDTGMLTVHHATQTPYQFQDLYSRHY HHHHHHHHHHHHHHCCCCCCCEEECCCEEEEECCCCCCEEEEEECCCCCHHHHHHHHHHC GIPEARVRVIAPDIGGSFGMKLHVYHEDMAVVGLSILLGRPVKYVADRIESFVSDIHARD CCCCCEEEEEECCCCCCCCCEEEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC HHVRARMAVDADGKILAMDIHDATAVGAFSTYPRTSVVEGNQVIRLIGAPYDFKSYRAVL HHEEEEEEECCCCCEEEEECCCCHHCCCCCCCCCCEEECCCCEEEEECCCCCHHHHHHHH EVVFQNKVQTSQYRAVGHPIACAVTERMVDLAAERIGADPLAMRARNVIADDAYPTASPT HHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCC GYKFEALSHEACLRRLREIMSYDGLRAEQAELRRRGVHRGIGIATFVEITNPSPAFYGVG CEEEHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEECC GARISSQDGATLSLTPSGEVRCAISVTEQGQGTEAIIGQIVADQLGLAQEHVKIITGDTE CCEECCCCCCEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCE VTPHGGATWACRGAGIGGETALQAARQLKANIVEIAALILQERPAALDIVDGQVVGKATR ECCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEECCCCC QPRIPVAEIARIAYFRSDTLPPGTQAQLTVSHHFAPQGYPFAFTNGVQGCYLEVDTDTGL CCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCEEEECCCCEEEEEEECCCHH IKLLKHYVVEDCGRIINPMLVDEQLRGGVVQGLGAALFEECRYSETGQLLNGSLADYLVP HHHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHH MAMEMPDIVIDHVETPTADTILGAKGCGEAGTAAASACVLNAVNDALTPFGASINAIPIT HHHCCCHHHHHCCCCCCCHHEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEECCC PARVLKSLNQY HHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7721710; 2818128; 12515558; 10430865; 12475995 [H]