Click here to switch to the map view.

The map label for this gene is clpS [H]

Identifier: 146341455

GI number: 146341455

Start: 4745442

End: 4745774

Strand: Reverse

Name: clpS [H]

Synonym: BRADO4546

Alternate gene names: 146341455

Gene position: 4745774-4745442 (Counterclockwise)

Preceding gene: 146341456

Following gene: 146341454

Centisome position: 63.65

GC content: 56.46

Gene sequence:

>333_bases
ATGAGCAATAACGACAATAAGTCCGGTGGCCCCGGCGGCCCGGCCACGTCCGTGATCACCAAGGTCAAGCCGAAGACCAA
GCGCCCCAATCTCTATCGCGTCCTGATCCTCAACGATGATTACACGCCGATGGAGTTCGTCGTTCTCGTTCTTGAGAAAT
TCTTCAACAAGGACGTCGAGGCCGCGACCAAGATCATGCTCCACGTGCACCATCACGGCATCGGGGAGTGCGGCGTTTTC
ACCTATGAGATCGCCGAGACGAAGGTGACGCAGGTGATGGACTTCGCCCGCAAGCATCAGCATCCGCTGCAATGTGTGAT
GGAGAAGAAGTAG

Upstream 100 bases:

>100_bases
GGGACAATGCGGGAAACCCTTTATTGGGGTCCTCGCAGCATTATCTAACGCGTGCAAGATGTCGCAGCCAAATTCCAGAT
TGAACCGATCCGCGCCTAGG

Downstream 100 bases:

>100_bases
CGCAGTGCTCTCGCAAGCCGCGACGCCGGGCCGGGTGCGCGCTCGCCGCAGCCGCTGTCAGGGAACATGCACACACGGGT
CGCCGCTGCGACCGAAGAAT

Product: ATP-dependent Clp protease adaptor protein ClpS, modulator of ClpA substrate specificity

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 110; Mature: 109

Protein sequence:

>110_residues
MSNNDNKSGGPGGPATSVITKVKPKTKRPNLYRVLILNDDYTPMEFVVLVLEKFFNKDVEAATKIMLHVHHHGIGECGVF
TYEIAETKVTQVMDFARKHQHPLQCVMEKK

Sequences:

>Translated_110_residues
MSNNDNKSGGPGGPATSVITKVKPKTKRPNLYRVLILNDDYTPMEFVVLVLEKFFNKDVEAATKIMLHVHHHGIGECGVF
TYEIAETKVTQVMDFARKHQHPLQCVMEKK
>Mature_109_residues
SNNDNKSGGPGGPATSVITKVKPKTKRPNLYRVLILNDDYTPMEFVVLVLEKFFNKDVEAATKIMLHVHHHGIGECGVFT
YEIAETKVTQVMDFARKHQHPLQCVMEKK

Specific function: Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation [H]

COG id: COG2127

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpS family [H]

Homologues:

Organism=Escherichia coli, GI1787108, Length=89, Percent_Identity=57.3033707865169, Blast_Score=114, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022935
- InterPro:   IPR003769
- InterPro:   IPR014719 [H]

Pfam domain/function: PF02617 ClpS [H]

EC number: NA

Molecular weight: Translated: 12439; Mature: 12307

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNNDNKSGGPGGPATSVITKVKPKTKRPNLYRVLILNDDYTPMEFVVLVLEKFFNKDVE
CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCHH
AATKIMLHVHHHGIGECGVFTYEIAETKVTQVMDFARKHQHPLQCVMEKK
HHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCHHHHCCCC
>Mature Secondary Structure 
SNNDNKSGGPGGPATSVITKVKPKTKRPNLYRVLILNDDYTPMEFVVLVLEKFFNKDVE
CCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCHH
AATKIMLHVHHHGIGECGVFTYEIAETKVTQVMDFARKHQHPLQCVMEKK
HHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12597275 [H]