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The map label for this gene is virR [H]

Identifier: 146341442

GI number: 146341442

Start: 4733001

End: 4733477

Strand: Reverse

Name: virR [H]

Synonym: BRADO4533

Alternate gene names: 146341442

Gene position: 4733477-4733001 (Counterclockwise)

Preceding gene: 146341443

Following gene: 146341441

Centisome position: 63.48

GC content: 68.13

Gene sequence:

>477_bases
ATGACCACTGAGACCGATCTCCGCCCGGGTGAAGTCACCGTCGATGCGCCGCAGCCGCGCGATGCCGCGCTGTATTTCAT
CGGCCGCATCCGCGCACCCTGGACCTCGCGCCTGGAGACACCCCGGCAGGGCAGCCTCGAGGGGCCGGTGTGCCGGCTCG
AAATCTTCGAGCCCTGGGTGCCGGCCCTGCAGGGGATCGACGGTTTCAGCCATCTGCAGGTGCTGTATTGGCTCAACCGG
GCCCGCCGCGACCTCGTCAAGCAGAGCCCGCGCCATCATGACGGCGAGACCCGCGGCACCTTCGCGCTGCGCTCGCCCGT
GCGCCCAAATCCGATCGGCGTCTCGACCGTCCGCTTCGTCGCGCTGGAGGGCAGCACCGTGCTGGTGCGCGGCCTCGATT
GCCTGGACGAGACGCCGCTGATCGACCTGAAGCCGGATCATTGTGTGTTCACGCCTGGGGCAAGCGAGGACAAATAG

Upstream 100 bases:

>100_bases
TGCTGGCCGGCACTTGGTGGCTCGGCTGAGTTGCGCGACCGCAATTGCGATGCCGCGGCGTTCGGCTAGATTAGCTGTGA
GATCTGAGGATTGTTTTGCG

Downstream 100 bases:

>100_bases
GACCGGCGATCGGGATGTCGAACCTGAACAAGCGGCCACAGAAGACCGTGACGGCTCTGGATGCGATCACCGCCGACCTC
GTCGCCGTGCTGGTCGCGGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 157

Protein sequence:

>158_residues
MTTETDLRPGEVTVDAPQPRDAALYFIGRIRAPWTSRLETPRQGSLEGPVCRLEIFEPWVPALQGIDGFSHLQVLYWLNR
ARRDLVKQSPRHHDGETRGTFALRSPVRPNPIGVSTVRFVALEGSTVLVRGLDCLDETPLIDLKPDHCVFTPGASEDK

Sequences:

>Translated_158_residues
MTTETDLRPGEVTVDAPQPRDAALYFIGRIRAPWTSRLETPRQGSLEGPVCRLEIFEPWVPALQGIDGFSHLQVLYWLNR
ARRDLVKQSPRHHDGETRGTFALRSPVRPNPIGVSTVRFVALEGSTVLVRGLDCLDETPLIDLKPDHCVFTPGASEDK
>Mature_157_residues
TTETDLRPGEVTVDAPQPRDAALYFIGRIRAPWTSRLETPRQGSLEGPVCRLEIFEPWVPALQGIDGFSHLQVLYWLNRA
RRDLVKQSPRHHDGETRGTFALRSPVRPNPIGVSTVRFVALEGSTVLVRGLDCLDETPLIDLKPDHCVFTPGASEDK

Specific function: Unknown

COG id: COG1720

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0066 (virR) family [H]

Homologues:

Organism=Homo sapiens, GI118600979, Length=127, Percent_Identity=31.496062992126, Blast_Score=66, Evalue=1e-11,
Organism=Escherichia coli, GI1786393, Length=129, Percent_Identity=34.8837209302326, Blast_Score=67, Evalue=5e-13,
Organism=Drosophila melanogaster, GI45552503, Length=125, Percent_Identity=36, Blast_Score=69, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24586408, Length=125, Percent_Identity=36, Blast_Score=69, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001378 [H]

Pfam domain/function: PF01980 UPF0066 [H]

EC number: NA

Molecular weight: Translated: 17667; Mature: 17536

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTETDLRPGEVTVDAPQPRDAALYFIGRIRAPWTSRLETPRQGSLEGPVCRLEIFEPWV
CCCCCCCCCCEEEECCCCCCCEEEEEEEECCCCHHHHCCCCCCCCCCCCEEEEEECCCHH
PALQGIDGFSHLQVLYWLNRARRDLVKQSPRHHDGETRGTFALRSPVRPNPIGVSTVRFV
HHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEE
ALEGSTVLVRGLDCLDETPLIDLKPDHCVFTPGASEDK
EECCCEEEEEECCCCCCCCEEECCCCCEEECCCCCCCC
>Mature Secondary Structure 
TTETDLRPGEVTVDAPQPRDAALYFIGRIRAPWTSRLETPRQGSLEGPVCRLEIFEPWV
CCCCCCCCCEEEECCCCCCCEEEEEEEECCCCHHHHCCCCCCCCCCCCEEEEEECCCHH
PALQGIDGFSHLQVLYWLNRARRDLVKQSPRHHDGETRGTFALRSPVRPNPIGVSTVRFV
HHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEE
ALEGSTVLVRGLDCLDETPLIDLKPDHCVFTPGASEDK
EECCCEEEEEECCCCCCCCEEECCCCCEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA