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The map label for this gene is yfgC [C]

Identifier: 146340468

GI number: 146340468

Start: 3690914

End: 3692311

Strand: Reverse

Name: yfgC [C]

Synonym: BRADO3508

Alternate gene names: 146340468

Gene position: 3692311-3690914 (Counterclockwise)

Preceding gene: 146340471

Following gene: 146340467

Centisome position: 49.52

GC content: 66.74

Gene sequence:

>1398_bases
ATGTCGCTCCGTATCGTGCTCCGCAACAAACTGTCCCGTGGCTGTGCCGCGCTCGTCGCGGTTGCCGTGGCGACTGCGCC
GCTCGCGCCGGCCTCGGCCCAGCAGGGCAAGGGACCGCCGATCCTGCGCGACACCGAAACCGAGGTGCTGCTGCGTGAGT
ACACGCGCCCGATCCTGCGCGTGGCCGGTCTCGAGAAGCAGAACATCCAGATGGTCATCATCAACGATGCGTCGTTCAAC
GCGTTCGTTGCCGACGGCCGTCGCATCTTCGTCAATTACGGCGCGATCATGCAGTCGGAGAATCCGAACCAGCTGATCGG
CGTTCTCGCGCACGAGACCGGCCATCTCGCCGGCGGCCACCTCGCCAAGCTGCGCCAGCAGCTGGCCACCGCCCAGACAC
AGATGATCATTGCCACCATCCTCGGCGCCGGCGCACTCGCCATGGGCGCCTCCCGCGGCGGCAATGGCGGTCTCGCCAAT
GCGGGCGCCGCGACACTGTCGGCACCCGGCGAGGTTATCCGCCGCTCGCTGCTGTCCTATCAGCGTCAGCAGGAGGAGAA
CGCCGACCGTGCCGGCGTCAAATTCCTGACCGCGACGGCGCAATCGCCCAAGGGCATGTACGAGACCTTCAAGCGCTTCA
CCAATGAGAGCCTGTTCGCCGCGCGCGGGGCCGATCCGTATCTGCAGTCGCATCCGATGCCGGCGGACCGCGTCGAGGCG
CTGGAAGGTCTGGCGCGGCAATCGCCCTATTGGGACAAGAAGGACGACGCGGCGCTGCAACTGCGTCACGACATGGTCCG
GGCCAAGATTTCCGCCTTCATGGAGCGGCCGGACACCGTGGCGCGGCGCTACCCGCTGTCCGACAATGGCATGCCGGCCC
GCTATGCCAGAGCGATCTCGACCTATCTCCACGGCGACCTGCGCAGCGCGCTGAACCAGATCGACGCCCTGATCCAGGCG
CAGCCCAACAACCCCTATTTCTACGAGGTGCGCGGTCAGGCCCTGCTGGAAGGCGGCCGTCCGGCCGAGGCGATCGCGCC
GCTGCGCAAGGCGGTGCAGCTGTCCAATAACGCCCCGCTCATCGAGATGTTACTTGGCCAGGCCTTGGTGGCATCGGAAA
ACAAGGCCTACACGGAAGAGGCGATCTCGATCCTGCGCGCGGCCGTGGCGCGCGAATCAGAGGCGCCGCTCGGCTATTCC
CAGCTCGCAATGGCCTATGGCCGCAAGGGCGACTATGCCGAAGCGGATCTCGCGTCCGCCCAGGCTGCCTTCCTCCGTGG
CGACAACAAGACCGCTCGCGAGCTGGCATCGCGAGCCAAGACCCGCTTCGCGGTGGGCTCGCCGGGCTGGGTGAAGGCGG
ACGACATCGTCGCGTCCAAACCGCTTTCGAACCAGTAG

Upstream 100 bases:

>100_bases
GGATCTGATTTGGGCCGCATTCGCCGCAGATGAGCCGCATTCCGCCGTTTGGTGGGCAATAGCCCGTATCGAGCCTCGCG
CCAATTGCAAAGATCGCCTG

Downstream 100 bases:

>100_bases
AACGACCAATTTGCTGCTAACATCAAGCTCGGATTACCAAAATACCAATCCAGCTCTGACAAGGACCCGATCATTTTGAC
CCAGAGGACCTTCTTCATGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 465; Mature: 464

Protein sequence:

>465_residues
MSLRIVLRNKLSRGCAALVAVAVATAPLAPASAQQGKGPPILRDTETEVLLREYTRPILRVAGLEKQNIQMVIINDASFN
AFVADGRRIFVNYGAIMQSENPNQLIGVLAHETGHLAGGHLAKLRQQLATAQTQMIIATILGAGALAMGASRGGNGGLAN
AGAATLSAPGEVIRRSLLSYQRQQEENADRAGVKFLTATAQSPKGMYETFKRFTNESLFAARGADPYLQSHPMPADRVEA
LEGLARQSPYWDKKDDAALQLRHDMVRAKISAFMERPDTVARRYPLSDNGMPARYARAISTYLHGDLRSALNQIDALIQA
QPNNPYFYEVRGQALLEGGRPAEAIAPLRKAVQLSNNAPLIEMLLGQALVASENKAYTEEAISILRAAVARESEAPLGYS
QLAMAYGRKGDYAEADLASAQAAFLRGDNKTARELASRAKTRFAVGSPGWVKADDIVASKPLSNQ

Sequences:

>Translated_465_residues
MSLRIVLRNKLSRGCAALVAVAVATAPLAPASAQQGKGPPILRDTETEVLLREYTRPILRVAGLEKQNIQMVIINDASFN
AFVADGRRIFVNYGAIMQSENPNQLIGVLAHETGHLAGGHLAKLRQQLATAQTQMIIATILGAGALAMGASRGGNGGLAN
AGAATLSAPGEVIRRSLLSYQRQQEENADRAGVKFLTATAQSPKGMYETFKRFTNESLFAARGADPYLQSHPMPADRVEA
LEGLARQSPYWDKKDDAALQLRHDMVRAKISAFMERPDTVARRYPLSDNGMPARYARAISTYLHGDLRSALNQIDALIQA
QPNNPYFYEVRGQALLEGGRPAEAIAPLRKAVQLSNNAPLIEMLLGQALVASENKAYTEEAISILRAAVARESEAPLGYS
QLAMAYGRKGDYAEADLASAQAAFLRGDNKTARELASRAKTRFAVGSPGWVKADDIVASKPLSNQ
>Mature_464_residues
SLRIVLRNKLSRGCAALVAVAVATAPLAPASAQQGKGPPILRDTETEVLLREYTRPILRVAGLEKQNIQMVIINDASFNA
FVADGRRIFVNYGAIMQSENPNQLIGVLAHETGHLAGGHLAKLRQQLATAQTQMIIATILGAGALAMGASRGGNGGLANA
GAATLSAPGEVIRRSLLSYQRQQEENADRAGVKFLTATAQSPKGMYETFKRFTNESLFAARGADPYLQSHPMPADRVEAL
EGLARQSPYWDKKDDAALQLRHDMVRAKISAFMERPDTVARRYPLSDNGMPARYARAISTYLHGDLRSALNQIDALIQAQ
PNNPYFYEVRGQALLEGGRPAEAIAPLRKAVQLSNNAPLIEMLLGQALVASENKAYTEEAISILRAAVARESEAPLGYSQ
LAMAYGRKGDYAEADLASAQAAFLRGDNKTARELASRAKTRFAVGSPGWVKADDIVASKPLSNQ

Specific function: Unknown

COG id: COG4783

COG function: function code R; Putative Zn-dependent protease, contains TPR repeats

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 TPR repeat [H]

Homologues:

Organism=Escherichia coli, GI1788840, Length=357, Percent_Identity=23.5294117647059, Blast_Score=79, Evalue=9e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001915
- InterPro:   IPR011716
- InterPro:   IPR011990 [H]

Pfam domain/function: PF01435 Peptidase_M48; PF07720 TPR_3 [H]

EC number: NA

Molecular weight: Translated: 50105; Mature: 49974

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLRIVLRNKLSRGCAALVAVAVATAPLAPASAQQGKGPPILRDTETEVLLREYTRPILR
CCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
VAGLEKQNIQMVIINDASFNAFVADGRRIFVNYGAIMQSENPNQLIGVLAHETGHLAGGH
HHCCCCCCEEEEEEECCCCCEEEECCCEEEEEECCEEECCCCCCEEEEHHHCCCCCCCHH
LAKLRQQLATAQTQMIIATILGAGALAMGASRGGNGGLANAGAATLSAPGEVIRRSLLSY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
QRQQEENADRAGVKFLTATAQSPKGMYETFKRFTNESLFAARGADPYLQSHPMPADRVEA
HHHHHHCCHHHCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCHHHCCCCCHHHHHH
LEGLARQSPYWDKKDDAALQLRHDMVRAKISAFMERPDTVARRYPLSDNGMPARYARAIS
HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCHHHHHHHH
TYLHGDLRSALNQIDALIQAQPNNPYFYEVRGQALLEGGRPAEAIAPLRKAVQLSNNAPL
HHHHHHHHHHHHHHHHHHEECCCCCEEEEECCHHHHCCCCCHHHHHHHHHHHHHCCCCCH
IEMLLGQALVASENKAYTEEAISILRAAVARESEAPLGYSQLAMAYGRKGDYAEADLASA
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHH
QAAFLRGDNKTARELASRAKTRFAVGSPGWVKADDIVASKPLSNQ
HHHHHCCCCHHHHHHHHHHHHEEECCCCCCEECCCHHCCCCCCCC
>Mature Secondary Structure 
SLRIVLRNKLSRGCAALVAVAVATAPLAPASAQQGKGPPILRDTETEVLLREYTRPILR
CEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
VAGLEKQNIQMVIINDASFNAFVADGRRIFVNYGAIMQSENPNQLIGVLAHETGHLAGGH
HHCCCCCCEEEEEEECCCCCEEEECCCEEEEEECCEEECCCCCCEEEEHHHCCCCCCCHH
LAKLRQQLATAQTQMIIATILGAGALAMGASRGGNGGLANAGAATLSAPGEVIRRSLLSY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
QRQQEENADRAGVKFLTATAQSPKGMYETFKRFTNESLFAARGADPYLQSHPMPADRVEA
HHHHHHCCHHHCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCHHHCCCCCHHHHHH
LEGLARQSPYWDKKDDAALQLRHDMVRAKISAFMERPDTVARRYPLSDNGMPARYARAIS
HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCHHHHHHHH
TYLHGDLRSALNQIDALIQAQPNNPYFYEVRGQALLEGGRPAEAIAPLRKAVQLSNNAPL
HHHHHHHHHHHHHHHHHHEECCCCCEEEEECCHHHHCCCCCHHHHHHHHHHHHHCCCCCH
IEMLLGQALVASENKAYTEEAISILRAAVARESEAPLGYSQLAMAYGRKGDYAEADLASA
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHH
QAAFLRGDNKTARELASRAKTRFAVGSPGWVKADDIVASKPLSNQ
HHHHHCCCCHHHHHHHHHHHHEEECCCCCCEECCCHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]