Definition Bradyrhizobium sp. ORS278 chromosome, complete genome.
Accession NC_009445
Length 7,456,587

Click here to switch to the map view.

The map label for this gene is yphA [C]

Identifier: 146340341

GI number: 146340341

Start: 3563895

End: 3564350

Strand: Direct

Name: yphA [C]

Synonym: BRADO3368

Alternate gene names: 146340341

Gene position: 3563895-3564350 (Clockwise)

Preceding gene: 146340340

Following gene: 146340346

Centisome position: 47.8

GC content: 62.06

Gene sequence:

>456_bases
ATGCCGGGTTTCATTACGTTCGGGCGCGTTCTGTTCGCCGTGATTTTCATCTACTCCGGCGCGACCAAGCTGCTCGGCAT
TCCCGCGACCGCCGATCTCATCGCCACCAAGGTGACGATCCCGGCGGCGATCGCGCCCTATGCGGCACAGCTGGAGGCTG
CCGCGAAGATGCCGATGCCGCAGATCCTCGCGATCGCCGCCGGCGCCTTCGAGGTGCTCGCCGGGCTGATGATCGCGCTG
AACATTCTCGGCCGGTTCTTCGCAGCCCTGCTGATCATCTTTGTCGGCGCGACGATCTTCTACTTTCACGATTTCTGGAA
CCAGCCCGCACCAGACAACGTCAAGGCGCTGATCGACGCGCTGAAGAACCTGTCGATCATCGGCGCGCTGTTCATGATCT
TCGGCTATGGCAAGGGGCCGAAAGTGCCTGAGCAGAGCGCCTATGGCGACCTCTAG

Upstream 100 bases:

>100_bases
GCATTCCGCCCGCCTTTATTGTTGAAAAGCGTTCGCGATGTCACACATCCCGGCGGCCTGCCGGCACCATGTCGTTTGAA
GTCGATCCACGAGGGCGAGA

Downstream 100 bases:

>100_bases
CGATGCCGCTCAGGCGGCGCGTTTCCAGGCGGTGACGCTGACGTCGTGGGCGGGGTCCAGCATCAGCTGATTGGCCGGCG
AGAGCCCATGCGCCGTCAGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 151; Mature: 150

Protein sequence:

>151_residues
MPGFITFGRVLFAVIFIYSGATKLLGIPATADLIATKVTIPAAIAPYAAQLEAAAKMPMPQILAIAAGAFEVLAGLMIAL
NILGRFFAALLIIFVGATIFYFHDFWNQPAPDNVKALIDALKNLSIIGALFMIFGYGKGPKVPEQSAYGDL

Sequences:

>Translated_151_residues
MPGFITFGRVLFAVIFIYSGATKLLGIPATADLIATKVTIPAAIAPYAAQLEAAAKMPMPQILAIAAGAFEVLAGLMIAL
NILGRFFAALLIIFVGATIFYFHDFWNQPAPDNVKALIDALKNLSIIGALFMIFGYGKGPKVPEQSAYGDL
>Mature_150_residues
PGFITFGRVLFAVIFIYSGATKLLGIPATADLIATKVTIPAAIAPYAAQLEAAAKMPMPQILAIAAGAFEVLAGLMIALN
ILGRFFAALLIIFVGATIFYFHDFWNQPAPDNVKALIDALKNLSIIGALFMIFGYGKGPKVPEQSAYGDL

Specific function: Unknown

COG id: COG2259

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16022; Mature: 15891

Theoretical pI: Translated: 8.86; Mature: 8.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGFITFGRVLFAVIFIYSGATKLLGIPATADLIATKVTIPAAIAPYAAQLEAAAKMPMP
CCCHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
QILAIAAGAFEVLAGLMIALNILGRFFAALLIIFVGATIFYFHDFWNQPAPDNVKALIDA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
LKNLSIIGALFMIFGYGKGPKVPEQSAYGDL
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PGFITFGRVLFAVIFIYSGATKLLGIPATADLIATKVTIPAAIAPYAAQLEAAAKMPMP
CCHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
QILAIAAGAFEVLAGLMIALNILGRFFAALLIIFVGATIFYFHDFWNQPAPDNVKALIDA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
LKNLSIIGALFMIFGYGKGPKVPEQSAYGDL
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA