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The map label for this gene is cmpR [H]

Identifier: 146340009

GI number: 146340009

Start: 3212203

End: 3213144

Strand: Reverse

Name: cmpR [H]

Synonym: BRADO3015

Alternate gene names: 146340009

Gene position: 3213144-3212203 (Counterclockwise)

Preceding gene: 146340020

Following gene: 146340008

Centisome position: 43.09

GC content: 69.64

Gene sequence:

>942_bases
GTGATCTTCCTGCTCGACCATCACCGGCTGCATTATCTCCACGAGACCGTCCGCCTGGGCTCGGTGCGCGCCGCCGCCGA
AGCACTCGACATCAACGCGTCAGTGATCAGCCGGCAGATCGCGCTGCTGGAGAAGGAGCTCGGCCTCACGCTGATCGAGC
GGCTGAGCCGCGGCATCCGCGCCACCGAGGCCGGCGCTCTGCTCGTCGAGCGCTTCCGGCAGTGGCAGGCCGATCAGGCC
GACACCGTCGCCAAACTGCGCGAGCTCACCGGCCTGACGCGCGGCCACGTCGACATCGTGCTCGGCGAAGGTTTTGTGAG
CGATCTGATGTCCGGCCCGCTCGGCCGGTTCTGGCAGCGGCATCCGGACCTCACGATGGCCTTCGACCTCGCCGGCACCA
ACGAGGTCGTGAACGCCGTGGCCGAGGACCGCCATCACATCGGCCTGGTGTTCAATCCGTCGGCCGATCCGCGCATCCGC
GTTGCCACGGCGAGCCGCCAGCCGCTCTGCGCGATCGTCCCGCCGGACCACGCGTTGACCCGGCTCGGCCGTCCCCTGCG
TCTGCGCGAGCTGGGCGACCATCCGCTCGGGCTGATGCATCCGAGCTACGGCACGCGGCAGATCGTGGCCATGGCGGAGG
CCGCCGAGCACATCGCGCTGCGGCCCAAGCTGACCACCAGCTCGATCAACGTGCTTCGACATTTCGTCAAGAGCGGCCTC
GGCCTGACGCTGCTGCCGGCGTTCTCGATCGCCGCCGACCTCGCCGACGGCTCGCTCAAAGCCCTGCCGATCGACAACCG
TCTGCTGGCGACGAGCGAAGCCTGCGTCATCACCCGCCGCGGCCGCGAGCTGCCGCACGCGGCCAGTCATCTGCTGCGCT
TCCTCAGCGGCCAGATGCGGGCGTTCCGGGCGGCGGAGGCGAGACGAAGGACGAGGTCGTAG

Upstream 100 bases:

>100_bases
TGCGCCATTGCCGAGGAAGCCTAGCCGCCGCGATTTGCGGCAGACATGAGCAGCCCGCGGCGTTAGTGTTGACTGCAAGT
CAACGCTTTTCGGATCGCCC

Downstream 100 bases:

>100_bases
GCTGCGCGAAGCTGCGAGCGTGCTTCCGTCGATTCGCGAGATCGCGCATGCGCCGTGCCCACGCAGATCTCGTGCGTCGC
GGCGTGATGGTGGGCAGCGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MIFLLDHHRLHYLHETVRLGSVRAAAEALDINASVISRQIALLEKELGLTLIERLSRGIRATEAGALLVERFRQWQADQA
DTVAKLRELTGLTRGHVDIVLGEGFVSDLMSGPLGRFWQRHPDLTMAFDLAGTNEVVNAVAEDRHHIGLVFNPSADPRIR
VATASRQPLCAIVPPDHALTRLGRPLRLRELGDHPLGLMHPSYGTRQIVAMAEAAEHIALRPKLTTSSINVLRHFVKSGL
GLTLLPAFSIAADLADGSLKALPIDNRLLATSEACVITRRGRELPHAASHLLRFLSGQMRAFRAAEARRRTRS

Sequences:

>Translated_313_residues
MIFLLDHHRLHYLHETVRLGSVRAAAEALDINASVISRQIALLEKELGLTLIERLSRGIRATEAGALLVERFRQWQADQA
DTVAKLRELTGLTRGHVDIVLGEGFVSDLMSGPLGRFWQRHPDLTMAFDLAGTNEVVNAVAEDRHHIGLVFNPSADPRIR
VATASRQPLCAIVPPDHALTRLGRPLRLRELGDHPLGLMHPSYGTRQIVAMAEAAEHIALRPKLTTSSINVLRHFVKSGL
GLTLLPAFSIAADLADGSLKALPIDNRLLATSEACVITRRGRELPHAASHLLRFLSGQMRAFRAAEARRRTRS
>Mature_313_residues
MIFLLDHHRLHYLHETVRLGSVRAAAEALDINASVISRQIALLEKELGLTLIERLSRGIRATEAGALLVERFRQWQADQA
DTVAKLRELTGLTRGHVDIVLGEGFVSDLMSGPLGRFWQRHPDLTMAFDLAGTNEVVNAVAEDRHHIGLVFNPSADPRIR
VATASRQPLCAIVPPDHALTRLGRPLRLRELGDHPLGLMHPSYGTRQIVAMAEAAEHIALRPKLTTSSINVLRHFVKSGL
GLTLLPAFSIAADLADGSLKALPIDNRLLATSEACVITRRGRELPHAASHLLRFLSGQMRAFRAAEARRRTRS

Specific function: Activates transcription of the cmpABCD operon under carbon dioxide-limited conditions. Specifically binds to the cmpR- cmpA intergenic region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=286, Percent_Identity=26.5734265734266, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87082132, Length=271, Percent_Identity=22.8782287822878, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1786401, Length=288, Percent_Identity=24.6527777777778, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI145693105, Length=231, Percent_Identity=22.0779220779221, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1788481, Length=256, Percent_Identity=23.046875, Blast_Score=65, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34507; Mature: 34507

Theoretical pI: Translated: 10.83; Mature: 10.83

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFLLDHHRLHYLHETVRLGSVRAAAEALDINASVISRQIALLEKELGLTLIERLSRGIR
CEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
ATEAGALLVERFRQWQADQADTVAKLRELTGLTRGHVDIVLGEGFVSDLMSGPLGRFWQR
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCCHHHHHHH
HPDLTMAFDLAGTNEVVNAVAEDRHHIGLVFNPSADPRIRVATASRQPLCAIVPPDHALT
CCCCEEEEECCCCHHHHHHHHCCCCEEEEEECCCCCCEEEEEECCCCCEEEEECCCHHHH
RLGRPLRLRELGDHPLGLMHPSYGTRQIVAMAEAAEHIALRPKLTTSSINVLRHFVKSGL
HCCCCEEHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHCCC
GLTLLPAFSIAADLADGSLKALPIDNRLLATSEACVITRRGRELPHAASHLLRFLSGQMR
CEEEHHHHHHHHHHCCCCEEEECCCCCEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHH
AFRAAEARRRTRS
HHHHHHHHHHCCC
>Mature Secondary Structure
MIFLLDHHRLHYLHETVRLGSVRAAAEALDINASVISRQIALLEKELGLTLIERLSRGIR
CEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
ATEAGALLVERFRQWQADQADTVAKLRELTGLTRGHVDIVLGEGFVSDLMSGPLGRFWQR
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCCHHHHHHH
HPDLTMAFDLAGTNEVVNAVAEDRHHIGLVFNPSADPRIRVATASRQPLCAIVPPDHALT
CCCCEEEEECCCCHHHHHHHHCCCCEEEEEECCCCCCEEEEEECCCCCEEEEECCCHHHH
RLGRPLRLRELGDHPLGLMHPSYGTRQIVAMAEAAEHIALRPKLTTSSINVLRHFVKSGL
HCCCCEEHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHCCC
GLTLLPAFSIAADLADGSLKALPIDNRLLATSEACVITRRGRELPHAASHLLRFLSGQMR
CEEEHHHHHHHHHHCCCCEEEECCCCCEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHH
AFRAAEARRRTRS
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]