Click here to switch to the map view.

The map label for this gene is 146339956

Identifier: 146339956

GI number: 146339956

Start: 3158654

End: 3159451

Strand: Direct

Name: 146339956

Synonym: BRADO2960

Alternate gene names: NA

Gene position: 3158654-3159451 (Clockwise)

Preceding gene: 146339952

Following gene: 146339957

Centisome position: 42.36

GC content: 66.67

Gene sequence:

>798_bases
TTGGATTCCCCGTCAGATCCCACGCAAGAGCAACCGCTTCAGGAGACGCCGCGAGAGCCGATCCTGAACCTGCCGGGCGC
GTTGACGGCCTACATCGCTCTGATCGCGGCGATCCATCTGCGCGTGCTGCTTCCGGACGAGTGGGACAACTACGTCATCG
ACCTGTTCGCCTTCGTCCCGAAACGATACGACCTCACGCTACTCGACGCTGCGTTTCCCGGGGGCACGCCGGCCAAGCTG
TGGACCTTCGTCAGCTACTCGCTGCTGCATGCCAATCTGACGCATATCGGCTTCAACATACTGTGGCTGCTGCCGTTCGG
CAGCGCGCTGGCGCGGCGCTTCGGGGCGGTGCGATTCTATCTGTTCATGGCCGTCACGGCGGCCGGCGGCGCGCTCGCGC
ATCTCATCACGCATGAGCATGAGCTGGCGCCGATGATCGGGGCATCGGCCTCGGTCTCCGGCGCGATGGCCGCCGCGATG
CGCTTCGCGTTCGTGCGCGGCGGCTTCCTGTCGTTCGGCCGCGGCGATGCCGATGCGGCGGCCAGGGTGCCGGCGCTGTC
GCTGGCGAGTGCACTGCGCAATCCGCGCGTGCTCGGCTTTCTGGCGGTCTGGTTCGGGGTCAACATCGTGTTCGGCGTCG
GCGACCTGACGCCCGGTGCCGAGGGCGCCAGCGTTGCCTGGCAGGCGCATATCGGCGGCTTCCTGACGGGACTGCTGCTG
TTTGCGCTGTTCGATCCGATCCCGCATGTGCGTGAAGATGCTGCACCTGCGTTGCCGTCGGAGTCGGCCGACAGTTAG

Upstream 100 bases:

>100_bases
CATCAGGCCGCACATCAACTTTGCATGTGTGCGCTTGCACAACGCCGGCAAAGCCGCCTATCTGACGGTTCTGTTCCTCC
CGTCGAAGGCGTGCGTTCCC

Downstream 100 bases:

>100_bases
TTGCCTCAAGGCTGCGCTTGCGAGCGCGCGTGAATTCATCCATCATTTGCGCCTGATGCAACCGGAGCACGATTCCGGGC
TAATAGAGCAGGGCGCTCGT

Product: hypothetical protein

Products: NA

Alternate protein names: Rhomboid-Like Protein; Rhombiod Family Transmembrane Protein; Peptidase Protein; S54 Family Peptidase; Peptidase

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MDSPSDPTQEQPLQETPREPILNLPGALTAYIALIAAIHLRVLLPDEWDNYVIDLFAFVPKRYDLTLLDAAFPGGTPAKL
WTFVSYSLLHANLTHIGFNILWLLPFGSALARRFGAVRFYLFMAVTAAGGALAHLITHEHELAPMIGASASVSGAMAAAM
RFAFVRGGFLSFGRGDADAAARVPALSLASALRNPRVLGFLAVWFGVNIVFGVGDLTPGAEGASVAWQAHIGGFLTGLLL
FALFDPIPHVREDAAPALPSESADS

Sequences:

>Translated_265_residues
MDSPSDPTQEQPLQETPREPILNLPGALTAYIALIAAIHLRVLLPDEWDNYVIDLFAFVPKRYDLTLLDAAFPGGTPAKL
WTFVSYSLLHANLTHIGFNILWLLPFGSALARRFGAVRFYLFMAVTAAGGALAHLITHEHELAPMIGASASVSGAMAAAM
RFAFVRGGFLSFGRGDADAAARVPALSLASALRNPRVLGFLAVWFGVNIVFGVGDLTPGAEGASVAWQAHIGGFLTGLLL
FALFDPIPHVREDAAPALPSESADS
>Mature_265_residues
MDSPSDPTQEQPLQETPREPILNLPGALTAYIALIAAIHLRVLLPDEWDNYVIDLFAFVPKRYDLTLLDAAFPGGTPAKL
WTFVSYSLLHANLTHIGFNILWLLPFGSALARRFGAVRFYLFMAVTAAGGALAHLITHEHELAPMIGASASVSGAMAAAM
RFAFVRGGFLSFGRGDADAAARVPALSLASALRNPRVLGFLAVWFGVNIVFGVGDLTPGAEGASVAWQAHIGGFLTGLLL
FALFDPIPHVREDAAPALPSESADS

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28220; Mature: 28220

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSPSDPTQEQPLQETPREPILNLPGALTAYIALIAAIHLRVLLPDEWDNYVIDLFAFVP
CCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC
KRYDLTLLDAAFPGGTPAKLWTFVSYSLLHANLTHIGFNILWLLPFGSALARRFGAVRFY
CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHH
LFMAVTAAGGALAHLITHEHELAPMIGASASVSGAMAAAMRFAFVRGGFLSFGRGDADAA
HHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHCCCCCCCHHH
ARVPALSLASALRNPRVLGFLAVWFGVNIVFGVGDLTPGAEGASVAWQAHIGGFLTGLLL
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEECCCCCCCCCCCCEEHHHHHHHHHHHHHH
FALFDPIPHVREDAAPALPSESADS
HHHHCCCCHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MDSPSDPTQEQPLQETPREPILNLPGALTAYIALIAAIHLRVLLPDEWDNYVIDLFAFVP
CCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC
KRYDLTLLDAAFPGGTPAKLWTFVSYSLLHANLTHIGFNILWLLPFGSALARRFGAVRFY
CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHH
LFMAVTAAGGALAHLITHEHELAPMIGASASVSGAMAAAMRFAFVRGGFLSFGRGDADAA
HHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHCCCCCCCHHH
ARVPALSLASALRNPRVLGFLAVWFGVNIVFGVGDLTPGAEGASVAWQAHIGGFLTGLLL
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEECCCCCCCCCCCCEEHHHHHHHHHHHHHH
FALFDPIPHVREDAAPALPSESADS
HHHHCCCCHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA