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The map label for this gene is yliC [C]

Identifier: 146339917

GI number: 146339917

Start: 3122961

End: 3123902

Strand: Reverse

Name: yliC [C]

Synonym: BRADO2921

Alternate gene names: 146339917

Gene position: 3123902-3122961 (Counterclockwise)

Preceding gene: 146339918

Following gene: 146339916

Centisome position: 41.89

GC content: 63.48

Gene sequence:

>942_bases
ATGATCGGTTATCTGCTTCGCCGCATCCTCGCATCCATCCCGGTGATGGGCGTGGTCGCGCTGTTCGTTTTTCTGCTGTT
GCGATTGACGCCCGGCGATCCCGCCGCGATCCTCGCCGGCGACAACGCGACACCCGAGCAGTTGGAGCGCATCCGCACCA
CACTCGGATTGAACGAGCCGCTCTACATCCAGTTCGTCACCTGGATCAATCAGCTGCTGCATGGCGATCTCGGCGTGTCG
CTGATCTCCAAGGTGCCGGTGCTGCAGATGATCGGCCAGCGCATCGAGCCGTCGATCTCGGTGGCGATCTCGACCATCAT
CCTGTCGATCCTCGTCGCCGTCCCGCTCGGCGTCATCGCGGCGTGGAAGCACGGCACCTGGATCGATCGCTTCGTGATGG
CGCTCTCGGTGCTCGGCTTCTCGGTGCCGGTGTTCGTGATCGGCTACATCCTGATCCAGGTGTTCGCGATCAATCTGCGC
TGGGTCCCGGTGCAGGGCTTCAAGAGTCTCAGCGTCGGCTTCGGCCCGTTCTTCGAGCGCATCATCCTGCCGACCTGCGC
GCTGTCCTTCATCTATGTCGCGTTGATCGCGCGCATGACGCGCGCGGCCATGCTCGACGTGCTCGGTGAGGATTTCGTGC
GCACCGCGCGCGCCAAGGGCGTCAGCGAGATAGCGGTGCTGCTGCGTCACGCGCTGCGCAATGCCGCCGTGCCGGTCATC
ACCGTGATCGGCTCGGGCTTCGCGCTGCTGATCTCTGGTGTCGTCGTCACCGAGAGCGTGTTCAACCTGCCGGGCATCGG
CCGCCTCACGGTCGATGCGGTGCTGGCGCGCGACTATCCGGTCATCCAGGGCATGATCCTGTTGACCTCGTTCATCTACC
TCGCGGTCAATCTCCTGATCGACCTCGCCTACACCATACTCGATCCACGCATCCGCTACTGA

Upstream 100 bases:

>100_bases
GAAAGCCATGAACCTTGCAAGCCATGACCATCGGTGACATGCAGACTCACTCTCGACGTCACGCGCGTCGGCCCCGCACC
ATGACAACGGTTCTCTCGAG

Downstream 100 bases:

>100_bases
GGCCGCATCCGATGGCGATCGTTACCACTCCAGAGCCGTCGATCCCGGTCACCACGCGACTGGGGCCCCGCTTCGGCTTT
CTCACCTCGACCCCGATCAT

Product: putative ABC transporter permease membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MIGYLLRRILASIPVMGVVALFVFLLLRLTPGDPAAILAGDNATPEQLERIRTTLGLNEPLYIQFVTWINQLLHGDLGVS
LISKVPVLQMIGQRIEPSISVAISTIILSILVAVPLGVIAAWKHGTWIDRFVMALSVLGFSVPVFVIGYILIQVFAINLR
WVPVQGFKSLSVGFGPFFERIILPTCALSFIYVALIARMTRAAMLDVLGEDFVRTARAKGVSEIAVLLRHALRNAAVPVI
TVIGSGFALLISGVVVTESVFNLPGIGRLTVDAVLARDYPVIQGMILLTSFIYLAVNLLIDLAYTILDPRIRY

Sequences:

>Translated_313_residues
MIGYLLRRILASIPVMGVVALFVFLLLRLTPGDPAAILAGDNATPEQLERIRTTLGLNEPLYIQFVTWINQLLHGDLGVS
LISKVPVLQMIGQRIEPSISVAISTIILSILVAVPLGVIAAWKHGTWIDRFVMALSVLGFSVPVFVIGYILIQVFAINLR
WVPVQGFKSLSVGFGPFFERIILPTCALSFIYVALIARMTRAAMLDVLGEDFVRTARAKGVSEIAVLLRHALRNAAVPVI
TVIGSGFALLISGVVVTESVFNLPGIGRLTVDAVLARDYPVIQGMILLTSFIYLAVNLLIDLAYTILDPRIRY
>Mature_313_residues
MIGYLLRRILASIPVMGVVALFVFLLLRLTPGDPAAILAGDNATPEQLERIRTTLGLNEPLYIQFVTWINQLLHGDLGVS
LISKVPVLQMIGQRIEPSISVAISTIILSILVAVPLGVIAAWKHGTWIDRFVMALSVLGFSVPVFVIGYILIQVFAINLR
WVPVQGFKSLSVGFGPFFERIILPTCALSFIYVALIARMTRAAMLDVLGEDFVRTARAKGVSEIAVLLRHALRNAAVPVI
TVIGSGFALLISGVVVTESVFNLPGIGRLTVDAVLARDYPVIQGMILLTSFIYLAVNLLIDLAYTILDPRIRY

Specific function: Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=313, Percent_Identity=43.1309904153355, Blast_Score=273, Evalue=1e-74,
Organism=Escherichia coli, GI1789965, Length=337, Percent_Identity=38.2789317507418, Blast_Score=240, Evalue=9e-65,
Organism=Escherichia coli, GI1789888, Length=315, Percent_Identity=38.7301587301587, Blast_Score=223, Evalue=1e-59,
Organism=Escherichia coli, GI1787497, Length=315, Percent_Identity=36.5079365079365, Blast_Score=211, Evalue=4e-56,
Organism=Escherichia coli, GI1787761, Length=328, Percent_Identity=36.890243902439, Blast_Score=184, Evalue=6e-48,
Organism=Escherichia coli, GI1788504, Length=361, Percent_Identity=27.7008310249307, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1787550, Length=272, Percent_Identity=27.5735294117647, Blast_Score=130, Evalue=1e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34145; Mature: 34145

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGYLLRRILASIPVMGVVALFVFLLLRLTPGDPAAILAGDNATPEQLERIRTTLGLNEP
CHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCC
LYIQFVTWINQLLHGDLGVSLISKVPVLQMIGQRIEPSISVAISTIILSILVAVPLGVIA
HHHHHHHHHHHHHHCHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
AWKHGTWIDRFVMALSVLGFSVPVFVIGYILIQVFAINLRWVPVQGFKSLSVGFGPFFER
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCHHHHCCHHHHHHH
IILPTCALSFIYVALIARMTRAAMLDVLGEDFVRTARAKGVSEIAVLLRHALRNAAVPVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHH
TVIGSGFALLISGVVVTESVFNLPGIGRLTVDAVLARDYPVIQGMILLTSFIYLAVNLLI
HHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
DLAYTILDPRIRY
HHHHHHHCCCCCC
>Mature Secondary Structure
MIGYLLRRILASIPVMGVVALFVFLLLRLTPGDPAAILAGDNATPEQLERIRTTLGLNEP
CHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCC
LYIQFVTWINQLLHGDLGVSLISKVPVLQMIGQRIEPSISVAISTIILSILVAVPLGVIA
HHHHHHHHHHHHHHCHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
AWKHGTWIDRFVMALSVLGFSVPVFVIGYILIQVFAINLRWVPVQGFKSLSVGFGPFFER
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCHHHHCCHHHHHHH
IILPTCALSFIYVALIARMTRAAMLDVLGEDFVRTARAKGVSEIAVLLRHALRNAAVPVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHH
TVIGSGFALLISGVVVTESVFNLPGIGRLTVDAVLARDYPVIQGMILLTSFIYLAVNLLI
HHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
DLAYTILDPRIRY
HHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424; 8796346 [H]