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The map label for this gene is yafM [H]

Identifier: 146339898

GI number: 146339898

Start: 3102092

End: 3102628

Strand: Direct

Name: yafM [H]

Synonym: BRADO2900

Alternate gene names: 146339898

Gene position: 3102092-3102628 (Clockwise)

Preceding gene: 146339897

Following gene: 146339904

Centisome position: 41.6

GC content: 60.15

Gene sequence:

>537_bases
ATGGTTCGCTATCGACGTCATCGCCTGGCTGGCGGCGCATACTTTTTCACGCTGGCCCTCGCAGATCGCCGATCCCGCGC
GCTGGTCGAACACGTCGACCTGCTCCGGCGTGCATTCCGCGCGACGCGTGACGAACGGCCATTCGAGATCGATGCCATCG
TCGTGCTGCCCGACCATCTGCATGTGGTCCTGACGCTACCTCACGACGACGCCGATTTTTCTGGACGCTGGCGAAGGATC
AAGGGGCAATTCAGCTCTGCCTTGCTGCATTCGGGTATCGCCGTGCCACGACGACGCAATGGCGAACTCGCGTTATGGCA
GCGGCGATTCTGGGAGCATACAATCCGCGATGACGACGATTTCGAGCGGCATGTCGACTACGTGCATTTCAATCCGGTCA
AGCACGGCCTGACCAGGCGAGTTTGCGACTGGCCACATTCGTCATTTCACCGTTATGTGCAGGATGGCGCTCTGCCCGAG
GATTGGGCAGGTGATCTCGGCGCGGACGAGGCCGATTATGGTGAGCCAATCTTGTAG

Upstream 100 bases:

>100_bases
ATGTCGCTACGCTCATCCGGGCTACGCGGTTGCATCCTTGACGGCTATCATCGTCCGACATTGAATGGGTGCCATCCGCT
TCACGCCTCGGACATTCGCG

Downstream 100 bases:

>100_bases
GCCCGGATGAGCGAAGCGACATCCGGGTTCACCGACACAGCGCGTGAGAACCCGGATGTCGCATTGCTCATCCGGGCTAC
GAAGCCCTCACCCCCGTCCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MVRYRRHRLAGGAYFFTLALADRRSRALVEHVDLLRRAFRATRDERPFEIDAIVVLPDHLHVVLTLPHDDADFSGRWRRI
KGQFSSALLHSGIAVPRRRNGELALWQRRFWEHTIRDDDDFERHVDYVHFNPVKHGLTRRVCDWPHSSFHRYVQDGALPE
DWAGDLGADEADYGEPIL

Sequences:

>Translated_178_residues
MVRYRRHRLAGGAYFFTLALADRRSRALVEHVDLLRRAFRATRDERPFEIDAIVVLPDHLHVVLTLPHDDADFSGRWRRI
KGQFSSALLHSGIAVPRRRNGELALWQRRFWEHTIRDDDDFERHVDYVHFNPVKHGLTRRVCDWPHSSFHRYVQDGALPE
DWAGDLGADEADYGEPIL
>Mature_178_residues
MVRYRRHRLAGGAYFFTLALADRRSRALVEHVDLLRRAFRATRDERPFEIDAIVVLPDHLHVVLTLPHDDADFSGRWRRI
KGQFSSALLHSGIAVPRRRNGELALWQRRFWEHTIRDDDDFERHVDYVHFNPVKHGLTRRVCDWPHSSFHRYVQDGALPE
DWAGDLGADEADYGEPIL

Specific function: Unknown

COG id: COG1943

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0217 [H]

Homologues:

Organism=Escherichia coli, GI1786422, Length=178, Percent_Identity=47.752808988764, Blast_Score=168, Evalue=1e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20901; Mature: 20901

Theoretical pI: Translated: 7.47; Mature: 7.47

Prosite motif: PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRYRRHRLAGGAYFFTLALADRRSRALVEHVDLLRRAFRATRDERPFEIDAIVVLPDHL
CCCCCCHHHCCCCEEEEEEHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCE
HVVLTLPHDDADFSGRWRRIKGQFSSALLHSGIAVPRRRNGELALWQRRFWEHTIRDDDD
EEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
FERHVDYVHFNPVKHGLTRRVCDWPHSSFHRYVQDGALPEDWAGDLGADEADYGEPIL
HHHHCCEEEECHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MVRYRRHRLAGGAYFFTLALADRRSRALVEHVDLLRRAFRATRDERPFEIDAIVVLPDHL
CCCCCCHHHCCCCEEEEEEHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCE
HVVLTLPHDDADFSGRWRRIKGQFSSALLHSGIAVPRRRNGELALWQRRFWEHTIRDDDD
EEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
FERHVDYVHFNPVKHGLTRRVCDWPHSSFHRYVQDGALPEDWAGDLGADEADYGEPIL
HHHHCCEEEECHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7596361; 9278503 [H]