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The map label for this gene is algB [H]

Identifier: 146339845

GI number: 146339845

Start: 3049771

End: 3050172

Strand: Direct

Name: algB [H]

Synonym: BRADO2847

Alternate gene names: 146339845

Gene position: 3049771-3050172 (Clockwise)

Preceding gene: 146339842

Following gene: 146339851

Centisome position: 40.9

GC content: 62.94

Gene sequence:

>402_bases
ATGCCACGGGTGCTGGTGGTGGACGATCAGAAGGACGTGCGCGCCATGATCAGCATGGTGCTGCGCGTCAATCAGTTCGA
GGTCGTCGAAGCGGGAACCGCTCCGGACGGTCTCAAATTGTTCCGCGCTCAGACGTTCGACGTCGTGATTGTCGACATCT
ATCTGGAGGAATCCAACGGTCTTGATCTGGTCAGCGAGATGCGGCGACTGGTTCCCGACGTGCCGGTCGTGGCCGTCTCC
GGCATGAGCGCGTTTGACGGGGCGGCGATGTCGGACGAACTCACGCGGGTGGTCTATTTGCAGAAGCCGTTCCGGCCGGG
CGAATTGATGAACGCGGTCGAAATGGCCCGTACGGCCGTCGAGGGCAGAGCAGCGGCGGCGCTGTCGGCCTGCGCCGGTT
AA

Upstream 100 bases:

>100_bases
GTAACTGCACCTTTACCGAAACGCGCGTAATATACCATTAGTTGTAGCTGATTTCCTTTTATGTTGTAGGCTGTCCAACG
AAAAATTTCTGGAGAATTGT

Downstream 100 bases:

>100_bases
CCGGCTGAGTGGCCGCTGCACTGCACGCGCTGAGATCGCGACGCGGACGTCGGTGTCCGCATCGCCAAAGTCAAAACAGA
ACGCCCCGGTCCATGACCGG

Product: putative two-component response regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 133; Mature: 132

Protein sequence:

>133_residues
MPRVLVVDDQKDVRAMISMVLRVNQFEVVEAGTAPDGLKLFRAQTFDVVIVDIYLEESNGLDLVSEMRRLVPDVPVVAVS
GMSAFDGAAMSDELTRVVYLQKPFRPGELMNAVEMARTAVEGRAAAALSACAG

Sequences:

>Translated_133_residues
MPRVLVVDDQKDVRAMISMVLRVNQFEVVEAGTAPDGLKLFRAQTFDVVIVDIYLEESNGLDLVSEMRRLVPDVPVVAVS
GMSAFDGAAMSDELTRVVYLQKPFRPGELMNAVEMARTAVEGRAAAALSACAG
>Mature_132_residues
PRVLVVDDQKDVRAMISMVLRVNQFEVVEAGTAPDGLKLFRAQTFDVVIVDIYLEESNGLDLVSEMRRLVPDVPVVAVSG
MSAFDGAAMSDELTRVVYLQKPFRPGELMNAVEMARTAVEGRAAAALSACAG

Specific function: Member of the two-component regulatory system AlgB/KinB involved in regulation of alginate biosynthesis genes. Positive regulator of the alginate biosynthetic gene AlgD [H]

COG id: COG2204

COG function: function code T; Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR011006
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR002078
- InterPro:   IPR001789 [H]

Pfam domain/function: PF02954 HTH_8; PF00072 Response_reg; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 14388; Mature: 14257

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
6.0 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRVLVVDDQKDVRAMISMVLRVNQFEVVEAGTAPDGLKLFRAQTFDVVIVDIYLEESNG
CCCEEEEECCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCEEEEEEEEEECCCC
LDLVSEMRRLVPDVPVVAVSGMSAFDGAAMSDELTRVVYLQKPFRPGELMNAVEMARTAV
CHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHEEEEEECCCCCHHHHHHHHHHHHHH
EGRAAAALSACAG
CCHHHHHHHHHCC
>Mature Secondary Structure 
PRVLVVDDQKDVRAMISMVLRVNQFEVVEAGTAPDGLKLFRAQTFDVVIVDIYLEESNG
CCEEEEECCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCEEEEEEEEEECCCC
LDLVSEMRRLVPDVPVVAVSGMSAFDGAAMSDELTRVVYLQKPFRPGELMNAVEMARTAV
CHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHEEEEEECCCCCHHHHHHHHHHHHHH
EGRAAAALSACAG
CCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1899859; 1738315; 10984043; 9473053 [H]