| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is ilvD [H]
Identifier: 146339754
GI number: 146339754
Start: 2960158
End: 2961996
Strand: Reverse
Name: ilvD [H]
Synonym: BRADO2754
Alternate gene names: 146339754
Gene position: 2961996-2960158 (Counterclockwise)
Preceding gene: 146339757
Following gene: 146339753
Centisome position: 39.72
GC content: 66.67
Gene sequence:
>1839_bases ATGCCCGCCTATCGCTCCCGCACCTCCACCCATGGCCGCAACATGGCCGGCGCCCGCGGCCTGTGGCGCGCCACCGGCAT GACCAACGAGGATTTCGGCAAGCCGATCATCGCCGTCGTCAACTCCTTCACCCAGTTCGTCCCCGGCCATGTCCATCTCA AGGATCTCGGCCAGCTGGTCGCGCGCGAGATCGAGAAGGCCGGCGGCGTCGCGAAGGAGTTCAACACCATCGCGGTCGAC GACGGCATCGCGATGGGCCATGACGGCATGCTCTACAGCCTGCCGTCGCGCGAGCTGATCGCCGACAGCACGGAATACAT GGTCAACGCGCATTGCGCCGACGCCATGGTCTGCATCTCCAACTGCGACAAGATCACCCCGGGCATGCTGATGGCCGCGA TGCGGCTGAATATTCCCGCGGTGTTCGTCTCGGGCGGCCCGATGGAGGCCGGCAAGGTCAACATCGAGGGCAAGCTGCGC AAGGTCGACCTGATCGACGCGATGATCGTGGCCGCCGACGACAAGGTGTCGGATGCCGACGTCGAGGTGATGGAGCGCTC GGCCTGCCCGACCTGCGGCTCCTGCTCCGGCATGTTCACCGCCAACTCGATGAACTGCCTGACCGAGGCACTCGGCCTGT CGCTGCCCGGCAATGGCTCGGTGCTGGCGACGCATGCCGACCGCAAGGGCCTGTTCGTCGAGGCCGGTCACCTGATCGTC GATCTCGCCCGCCGCTACTACGAGCAGGACGATGCGAGCGTGCTGCCGCGTTCGATCGCCAACTTCAAGGCGTTCGAGAA CGCGATGAGCATGGACATCGCGATGGGCGGCTCGACCAACACCGTGCTGCATCTGCTCGCCGCCGCGCATGAGGGCGAGA TCCCGTTCACGATGACCGATATTGACCGGCTGTCGCGCAAGGTGCCCTGCCTGTGCAAGGTCGCGCCCGCGGTAGCCGAC GTGCACATGGAGGACGTGCATCGCGCCGGCGGCGTGATGGGCATCCTCGGCGAGCTCGCCCGCGCCGGCCTGCTGCACAC GGAGTTGCCGAGCGTGCATTCGGCCTCGCTCGCGGCAGCGCTGGAGCGCTGGGACATCCGCCAGACCTCCAGCGAGAGCG TGAAGAACTTCTACATGGCCGCCCCCGGCGGCGTGCCGACCCAGGTCGCCTTCAGCCAGGACCGCCGCTACCAGGAGCTC GATCTCGACCGGCAGACAGGCTGCATCCGCGACCTCGACCACGCCTATTCCAAGGATGGCGGCTTGGCCGTGCTGACCGG CAACATCGCGCTCGACGGCTGCATCGTGAAGACCGCCGGCGTTGATGCCTCGATCCTGAAATTCGCAGGCCCCGCGCGGG TGATGGAGAGCCAGGACGCGGCGGTCGAAGCGATCCTCACCAACAAGATCAAGGCCGGCGACATCGTCGTCATCATCTAT GAAGGCCCGCGCGGCGGCCCAGGCATGCAGGAGATGCTGTATCCGACCAGCTATCTGAAGTCGAAGGGCCTCGGCAAGGC CTGCGCGCTGATCACCGACGGCCGCTTCTCCGGCGGCACCTCGGGCCTGTCGATCGGCCACGTCTCGCCAGAAGCCGCCG AAGGCGGTCTCATCGGCCTGGTGCAGGACGGCGATCGTATCGAGATCGACATCCCCAACCGCACCATCCATCTCGCCGTG TCAGACGAGGAACTCGCCAAGCGCCGCGCCGCGATGGAGGCGAAGGGCGATCAGGCCTGGAAGCCGAAGACCCGCGCCCG CAAGGTCTCGACCGCGCTCAAGGCCTATGCTGCATTTGCGTCAAGTGCCGCCAAGGGCGCGGTGCGGGTGGTGAAGTAG
Upstream 100 bases:
>100_bases GCCTCCGAAATCTTTGCCGCCGGTCCGGCCGGCGCGGCCCGCCGCCCCGTCCGCCGGACCCAACATTGCCGCTCCCGAGG AACGTCTCAAGGAACCCGTC
Downstream 100 bases:
>100_bases GTAACCAACCAACCCTCTTAATGGTTCATAGACCCGGCCGCCAACGGCCGGGTCTCACCTCAGCGAAGTCTTAGATCCTG ATCTATGGCGGAGCCCGTCA
Product: dihydroxyacid dehydratase
Products: NA
Alternate protein names: DAD [H]
Number of amino acids: Translated: 612; Mature: 611
Protein sequence:
>612_residues MPAYRSRTSTHGRNMAGARGLWRATGMTNEDFGKPIIAVVNSFTQFVPGHVHLKDLGQLVAREIEKAGGVAKEFNTIAVD DGIAMGHDGMLYSLPSRELIADSTEYMVNAHCADAMVCISNCDKITPGMLMAAMRLNIPAVFVSGGPMEAGKVNIEGKLR KVDLIDAMIVAADDKVSDADVEVMERSACPTCGSCSGMFTANSMNCLTEALGLSLPGNGSVLATHADRKGLFVEAGHLIV DLARRYYEQDDASVLPRSIANFKAFENAMSMDIAMGGSTNTVLHLLAAAHEGEIPFTMTDIDRLSRKVPCLCKVAPAVAD VHMEDVHRAGGVMGILGELARAGLLHTELPSVHSASLAAALERWDIRQTSSESVKNFYMAAPGGVPTQVAFSQDRRYQEL DLDRQTGCIRDLDHAYSKDGGLAVLTGNIALDGCIVKTAGVDASILKFAGPARVMESQDAAVEAILTNKIKAGDIVVIIY EGPRGGPGMQEMLYPTSYLKSKGLGKACALITDGRFSGGTSGLSIGHVSPEAAEGGLIGLVQDGDRIEIDIPNRTIHLAV SDEELAKRRAAMEAKGDQAWKPKTRARKVSTALKAYAAFASSAAKGAVRVVK
Sequences:
>Translated_612_residues MPAYRSRTSTHGRNMAGARGLWRATGMTNEDFGKPIIAVVNSFTQFVPGHVHLKDLGQLVAREIEKAGGVAKEFNTIAVD DGIAMGHDGMLYSLPSRELIADSTEYMVNAHCADAMVCISNCDKITPGMLMAAMRLNIPAVFVSGGPMEAGKVNIEGKLR KVDLIDAMIVAADDKVSDADVEVMERSACPTCGSCSGMFTANSMNCLTEALGLSLPGNGSVLATHADRKGLFVEAGHLIV DLARRYYEQDDASVLPRSIANFKAFENAMSMDIAMGGSTNTVLHLLAAAHEGEIPFTMTDIDRLSRKVPCLCKVAPAVAD VHMEDVHRAGGVMGILGELARAGLLHTELPSVHSASLAAALERWDIRQTSSESVKNFYMAAPGGVPTQVAFSQDRRYQEL DLDRQTGCIRDLDHAYSKDGGLAVLTGNIALDGCIVKTAGVDASILKFAGPARVMESQDAAVEAILTNKIKAGDIVVIIY EGPRGGPGMQEMLYPTSYLKSKGLGKACALITDGRFSGGTSGLSIGHVSPEAAEGGLIGLVQDGDRIEIDIPNRTIHLAV SDEELAKRRAAMEAKGDQAWKPKTRARKVSTALKAYAAFASSAAKGAVRVVK >Mature_611_residues PAYRSRTSTHGRNMAGARGLWRATGMTNEDFGKPIIAVVNSFTQFVPGHVHLKDLGQLVAREIEKAGGVAKEFNTIAVDD GIAMGHDGMLYSLPSRELIADSTEYMVNAHCADAMVCISNCDKITPGMLMAAMRLNIPAVFVSGGPMEAGKVNIEGKLRK VDLIDAMIVAADDKVSDADVEVMERSACPTCGSCSGMFTANSMNCLTEALGLSLPGNGSVLATHADRKGLFVEAGHLIVD LARRYYEQDDASVLPRSIANFKAFENAMSMDIAMGGSTNTVLHLLAAAHEGEIPFTMTDIDRLSRKVPCLCKVAPAVADV HMEDVHRAGGVMGILGELARAGLLHTELPSVHSASLAAALERWDIRQTSSESVKNFYMAAPGGVPTQVAFSQDRRYQELD LDRQTGCIRDLDHAYSKDGGLAVLTGNIALDGCIVKTAGVDASILKFAGPARVMESQDAAVEAILTNKIKAGDIVVIIYE GPRGGPGMQEMLYPTSYLKSKGLGKACALITDGRFSGGTSGLSIGHVSPEAAEGGLIGLVQDGDRIEIDIPNRTIHLAVS DEELAKRRAAMEAKGDQAWKPKTRARKVSTALKAYAAFASSAAKGAVRVVK
Specific function: Valine and isoleucine biosynthesis; fourth step. [C]
COG id: COG0129
COG function: function code EG; Dihydroxyacid dehydratase/phosphogluconate dehydratase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ilvD/edd family [H]
Homologues:
Organism=Escherichia coli, GI48994964, Length=609, Percent_Identity=75.0410509031199, Blast_Score=946, Evalue=0.0, Organism=Escherichia coli, GI2367371, Length=566, Percent_Identity=32.1554770318021, Blast_Score=192, Evalue=4e-50, Organism=Escherichia coli, GI1788157, Length=588, Percent_Identity=28.7414965986395, Blast_Score=182, Evalue=5e-47, Organism=Escherichia coli, GI1786464, Length=546, Percent_Identity=32.2344322344322, Blast_Score=182, Evalue=6e-47, Organism=Saccharomyces cerevisiae, GI6322476, Length=607, Percent_Identity=36.9028006589786, Blast_Score=341, Evalue=2e-94,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015928 - InterPro: IPR004404 - InterPro: IPR000581 - InterPro: IPR020558 [H]
Pfam domain/function: PF00920 ILVD_EDD [H]
EC number: =4.2.1.9 [H]
Molecular weight: Translated: 64948; Mature: 64817
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: PS00886 ILVD_EDD_1 ; PS00887 ILVD_EDD_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 6.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPAYRSRTSTHGRNMAGARGLWRATGMTNEDFGKPIIAVVNSFTQFVPGHVHLKDLGQLV CCCCCCCCCCCCCCCCCCCCHHEECCCCCCHHCCHHHHHHHHHHHHCCCCEEHHHHHHHH AREIEKAGGVAKEFNTIAVDDGIAMGHDGMLYSLPSRELIADSTEYMVNAHCADAMVCIS HHHHHHHCCCHHHCCEEEECCCEEECCCCEEEECCCCHHHCCCHHHEEECCHHHHHHHHH NCDKITPGMLMAAMRLNIPAVFVSGGPMEAGKVNIEGKLRKVDLIDAMIVAADDKVSDAD CCCCCCHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCEEEEEEEEEEEEECCCCCCCCH VEVMERSACPTCGSCSGMFTANSMNCLTEALGLSLPGNGSVLATHADRKGLFVEAGHLIV HHHHHHCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEECCHHHH DLARRYYEQDDASVLPRSIANFKAFENAMSMDIAMGGSTNTVLHLLAAAHEGEIPFTMTD HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHCCCCCCEEEHH IDRLSRKVPCLCKVAPAVADVHMEDVHRAGGVMGILGELARAGLLHTELPSVHSASLAAA HHHHHCCCCCCEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHCCCCCCHHHHHHHH LERWDIRQTSSESVKNFYMAAPGGVPTQVAFSQDRRYQELDLDRQTGCIRDLDHAYSKDG HHHHCCCCCCHHHHHHEEEECCCCCCCEEEEHHCCCHHHCCCCCCCCHHHHHHHHHCCCC GLAVLTGNIALDGCIVKTAGVDASILKFAGPARVMESQDAAVEAILTNKIKAGDIVVIIY CEEEEECCEEECCEEEEECCCCHHHHHHCCCHHHHCCCHHHHHHHHHCCCCCCCEEEEEE EGPRGGPGMQEMLYPTSYLKSKGLGKACALITDGRFSGGTSGLSIGHVSPEAAEGGLIGL ECCCCCCCHHHHHCCHHHHHHCCCCCEEEEEECCCCCCCCCCEEECCCCCCCCCCCEEEE VQDGDRIEIDIPNRTIHLAVSDEELAKRRAAMEAKGDQAWKPKTRARKVSTALKAYAAFA EECCCEEEEECCCCEEEEEECHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH SSAAKGAVRVVK HHHCCCCEEECC >Mature Secondary Structure PAYRSRTSTHGRNMAGARGLWRATGMTNEDFGKPIIAVVNSFTQFVPGHVHLKDLGQLV CCCCCCCCCCCCCCCCCCCHHEECCCCCCHHCCHHHHHHHHHHHHCCCCEEHHHHHHHH AREIEKAGGVAKEFNTIAVDDGIAMGHDGMLYSLPSRELIADSTEYMVNAHCADAMVCIS HHHHHHHCCCHHHCCEEEECCCEEECCCCEEEECCCCHHHCCCHHHEEECCHHHHHHHHH NCDKITPGMLMAAMRLNIPAVFVSGGPMEAGKVNIEGKLRKVDLIDAMIVAADDKVSDAD CCCCCCHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCEEEEEEEEEEEEECCCCCCCCH VEVMERSACPTCGSCSGMFTANSMNCLTEALGLSLPGNGSVLATHADRKGLFVEAGHLIV HHHHHHCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEECCHHHH DLARRYYEQDDASVLPRSIANFKAFENAMSMDIAMGGSTNTVLHLLAAAHEGEIPFTMTD HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHCCCCCCEEEHH IDRLSRKVPCLCKVAPAVADVHMEDVHRAGGVMGILGELARAGLLHTELPSVHSASLAAA HHHHHCCCCCCEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHCCCCCCHHHHHHHH LERWDIRQTSSESVKNFYMAAPGGVPTQVAFSQDRRYQELDLDRQTGCIRDLDHAYSKDG HHHHCCCCCCHHHHHHEEEECCCCCCCEEEEHHCCCHHHCCCCCCCCHHHHHHHHHCCCC GLAVLTGNIALDGCIVKTAGVDASILKFAGPARVMESQDAAVEAILTNKIKAGDIVVIIY CEEEEECCEEECCEEEEECCCCHHHHHHCCCHHHHCCCHHHHHHHHHCCCCCCCEEEEEE EGPRGGPGMQEMLYPTSYLKSKGLGKACALITDGRFSGGTSGLSIGHVSPEAAEGGLIGL ECCCCCCCHHHHHCCHHHHHHCCCCCEEEEEECCCCCCCCCCEEECCCCCCCCCCCEEEE VQDGDRIEIDIPNRTIHLAVSDEELAKRRAAMEAKGDQAWKPKTRARKVSTALKAYAAFA EECCCEEEEECCCCEEEEEECHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH SSAAKGAVRVVK HHHCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA