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The map label for this gene is rpoE [H]

Identifier: 146339644

GI number: 146339644

Start: 2831877

End: 2832428

Strand: Reverse

Name: rpoE [H]

Synonym: BRADO2637

Alternate gene names: 146339644

Gene position: 2832428-2831877 (Counterclockwise)

Preceding gene: 146339645

Following gene: 146339643

Centisome position: 37.99

GC content: 68.66

Gene sequence:

>552_bases
GTGGCCACATCGCCTGACGATCCCGAACGGGCGCGGCGCTTCCGCGAGGCGGCGCTGCCCTATCTCGACGACGTCTATAC
GCTGGCGCGCTATCTCCTGCGCAATCCGGCGGACGCCGAGGATGCGGTGCAGGAATGCTACTTGCGCGCGCTCAAGCATT
TCGACAGCTATCGCGGCCCGGCCATGAAGCCGTGGCTGTTCGCGATCCTGCGCAATGTCTGCCACGCCGAGTTTGCCCGC
CGCGCCGGCGCGCCAGCCAAGACGCTCGACGATGCGCCCGAGAGCGGCGAGCAGGCACCGCTCTGGCAGGAAAGCGCCGA
GACACCGGAGAGCGCCGTGCTGCGCGAGCATGATGCCTCCGCCATCCAGCAGATGATCGCGACCCTGGCCGAGCCGTTTC
GCGAAACCTTCGTGCTGCGCGAGATCAACAATCTGTCCTATCGCGAGATCGCGGAGGCCGCGGGCGTGCCGGTCGGCACT
GTGATGTCTCGCCTGGCCCGCGCCCGCGCGATGCTGCGCGCCGCCTGGCTCGCGCAGGAGGAGCCACAATGA

Upstream 100 bases:

>100_bases
TAGCGTCGCGAACCAGGGCATGAGAACGGCGTCATGGCCGGGCCGGCAGCAAGCTGCCGCCCCGGCGGTGACGCCGCGAA
CCGAACCGGAAAGGACGCCG

Downstream 100 bases:

>100_bases
TGACCTGCGACGAAGCGGAGATCCTGATCCACGCGCTGGCTGACGGCGAGCTCGATGCCGGCCATGCCCGTGAGGTCGAG
GCCCATGTGGCGACCTGCGC

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 183; Mature: 182

Protein sequence:

>183_residues
MATSPDDPERARRFREAALPYLDDVYTLARYLLRNPADAEDAVQECYLRALKHFDSYRGPAMKPWLFAILRNVCHAEFAR
RAGAPAKTLDDAPESGEQAPLWQESAETPESAVLREHDASAIQQMIATLAEPFRETFVLREINNLSYREIAEAAGVPVGT
VMSRLARARAMLRAAWLAQEEPQ

Sequences:

>Translated_183_residues
MATSPDDPERARRFREAALPYLDDVYTLARYLLRNPADAEDAVQECYLRALKHFDSYRGPAMKPWLFAILRNVCHAEFAR
RAGAPAKTLDDAPESGEQAPLWQESAETPESAVLREHDASAIQQMIATLAEPFRETFVLREINNLSYREIAEAAGVPVGT
VMSRLARARAMLRAAWLAQEEPQ
>Mature_182_residues
ATSPDDPERARRFREAALPYLDDVYTLARYLLRNPADAEDAVQECYLRALKHFDSYRGPAMKPWLFAILRNVCHAEFARR
AGAPAKTLDDAPESGEQAPLWQESAETPESAVLREHDASAIQQMIATLAEPFRETFVLREINNLSYREIAEAAGVPVGTV
MSRLARARAMLRAAWLAQEEPQ

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=136, Percent_Identity=35.2941176470588, Blast_Score=71, Evalue=4e-14,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 20586; Mature: 20455

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATSPDDPERARRFREAALPYLDDVYTLARYLLRNPADAEDAVQECYLRALKHFDSYRGP
CCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC
AMKPWLFAILRNVCHAEFARRAGAPAKTLDDAPESGEQAPLWQESAETPESAVLREHDAS
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHH
AIQQMIATLAEPFRETFVLREINNLSYREIAEAAGVPVGTVMSRLARARAMLRAAWLAQE
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
EPQ
CCC
>Mature Secondary Structure 
ATSPDDPERARRFREAALPYLDDVYTLARYLLRNPADAEDAVQECYLRALKHFDSYRGP
CCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC
AMKPWLFAILRNVCHAEFARRAGAPAKTLDDAPESGEQAPLWQESAETPESAVLREHDAS
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHH
AIQQMIATLAEPFRETFVLREINNLSYREIAEAAGVPVGTVMSRLARARAMLRAAWLAQE
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
EPQ
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]