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The map label for this gene is cph2 [H]

Identifier: 146339374

GI number: 146339374

Start: 2511064

End: 2512203

Strand: Direct

Name: cph2 [H]

Synonym: BRADO2356

Alternate gene names: 146339374

Gene position: 2511064-2512203 (Clockwise)

Preceding gene: 146339373

Following gene: 146339375

Centisome position: 33.68

GC content: 67.02

Gene sequence:

>1140_bases
ATGTCAGCTGAACACCATGACGATGCTTGCCGCCTGGAGGCACTGGCGGAACTGGATATACTGGATACGCCGCGCGAGCG
CGCGTTCGACAGGCTCACCGGGTTGTGCCGCAAGATCTTCGACGTGCCGATGTCGACGCTGACCTTCATCGACGGCCATC
GCCAATGGTTCAAGGCGGCCGACGGCATGACCGAGCGCGAGGGCGACCGGCGGCCGGCGCTCTGCAACCTTGCGATCCGG
CAGTCCGAGCCCCTCGTCATCTTCGATACTCATCAGGACGCGCGCCTGGCGGGCAATGTCCTGGTCTATGGCAAACCGTT
CATCCGGTTCTATGCCGGCGCGCAGCTTCGTATTTCCGGAACCAATGTCGGCACGCTCTGCGCGATGGACACCAGGCCGC
GGGTGTTCGGTGCACGCGACGTCGAGATGCTCCGGGACCTTGCGGCGCTCGCCGTCGACGAGCTGATGCTGCGCAATCTG
AGCCTGCGCGACGGTCTCACCGGTGCGCTCTCGCGCCGCGCCTTCCGCAGCGAGGGCGAGCGCCTGCGGGCGCTCGCGGA
GCGCCATCGTCACCCGCTCACCTGCGCCTTGCTCGACGTCGATCACTTCAAATCCGTGAATGACAATCATGGCCATGCGG
CCGGCGACCTCGTGCTGTCGAAGGTGGTCGGCGCCTGTCAGAACGTCCTGCGCGCCTCCGACGTGATCGGCCGTCTCGGC
GGCGAGGAGTTCGGCATCATCCTGCCGCATACGAGCCTGGACGACGCGATGGCTGTGCTCGAGAAGATGCGCTCCGCCGT
CGCCGACCTTTCGATCGAGAGCCCGTCGGGACCGATCCGCATCACCGCCAGCTTCGGCGCCGTCGACCTCACGCCCGGGC
AACCCTTCGATGCCATGCTCGCGCGCGCCGATCGCGCGATGTATGCAGCGAAGAACGGCGGCCGCAACCAGGTCATCGCC
TGGGTCGAGGCCGCGCCCTCGATCGCCCCGACACTGCGGCGCGTCTTCAAGGCCGGGCAGATCGCCTTCAACGCCGGACG
CTCCACCTTCGACTGCACGGTCCGCGCGCTGTCGGAGACCCGCCGCGCTGGAGGTGATCTCGACGGCCGACCTTCCCGAG
CAGTTCAAGCTCGCGATTGA

Upstream 100 bases:

>100_bases
GAGTTCCATGCGCGAGATCGGCTCGGTTAGGAGTTCCCTCATCCTGCTGTTAAATCCAGCGTTAAGCGGCACGGGCGATG
TTGGCGCCAAGGAGTTGCCG

Downstream 100 bases:

>100_bases
AAGCGACGGCTTCTCGCGCGCCTGTCGCATGACCGCACGCACCGAGCAGCGCATCGAGGTTGCATTCGTGTAGTTCACCT
CGCTGCGGAGCAGGGGCGTT

Product: hypothetical protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 379; Mature: 378

Protein sequence:

>379_residues
MSAEHHDDACRLEALAELDILDTPRERAFDRLTGLCRKIFDVPMSTLTFIDGHRQWFKAADGMTEREGDRRPALCNLAIR
QSEPLVIFDTHQDARLAGNVLVYGKPFIRFYAGAQLRISGTNVGTLCAMDTRPRVFGARDVEMLRDLAALAVDELMLRNL
SLRDGLTGALSRRAFRSEGERLRALAERHRHPLTCALLDVDHFKSVNDNHGHAAGDLVLSKVVGACQNVLRASDVIGRLG
GEEFGIILPHTSLDDAMAVLEKMRSAVADLSIESPSGPIRITASFGAVDLTPGQPFDAMLARADRAMYAAKNGGRNQVIA
WVEAAPSIAPTLRRVFKAGQIAFNAGRSTFDCTVRALSETRRAGGDLDGRPSRAVQARD

Sequences:

>Translated_379_residues
MSAEHHDDACRLEALAELDILDTPRERAFDRLTGLCRKIFDVPMSTLTFIDGHRQWFKAADGMTEREGDRRPALCNLAIR
QSEPLVIFDTHQDARLAGNVLVYGKPFIRFYAGAQLRISGTNVGTLCAMDTRPRVFGARDVEMLRDLAALAVDELMLRNL
SLRDGLTGALSRRAFRSEGERLRALAERHRHPLTCALLDVDHFKSVNDNHGHAAGDLVLSKVVGACQNVLRASDVIGRLG
GEEFGIILPHTSLDDAMAVLEKMRSAVADLSIESPSGPIRITASFGAVDLTPGQPFDAMLARADRAMYAAKNGGRNQVIA
WVEAAPSIAPTLRRVFKAGQIAFNAGRSTFDCTVRALSETRRAGGDLDGRPSRAVQARD
>Mature_378_residues
SAEHHDDACRLEALAELDILDTPRERAFDRLTGLCRKIFDVPMSTLTFIDGHRQWFKAADGMTEREGDRRPALCNLAIRQ
SEPLVIFDTHQDARLAGNVLVYGKPFIRFYAGAQLRISGTNVGTLCAMDTRPRVFGARDVEMLRDLAALAVDELMLRNLS
LRDGLTGALSRRAFRSEGERLRALAERHRHPLTCALLDVDHFKSVNDNHGHAAGDLVLSKVVGACQNVLRASDVIGRLGG
EEFGIILPHTSLDDAMAVLEKMRSAVADLSIESPSGPIRITASFGAVDLTPGQPFDAMLARADRAMYAAKNGGRNQVIAW
VEAAPSIAPTLRRVFKAGQIAFNAGRSTFDCTVRALSETRRAGGDLDGRPSRAVQARD

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral membrane protein (Potential) [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI87082007, Length=179, Percent_Identity=39.1061452513966, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI87081881, Length=169, Percent_Identity=38.4615384615385, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1787262, Length=199, Percent_Identity=32.1608040201005, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI145693134, Length=159, Percent_Identity=36.4779874213836, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1786584, Length=191, Percent_Identity=34.5549738219895, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1787802, Length=200, Percent_Identity=31, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1788381, Length=176, Percent_Identity=38.0681818181818, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1787816, Length=158, Percent_Identity=35.4430379746835, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI87081977, Length=213, Percent_Identity=30.9859154929577, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1787056, Length=187, Percent_Identity=29.4117647058824, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1788085, Length=163, Percent_Identity=32.5153374233129, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1787541, Length=165, Percent_Identity=33.9393939393939, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 41426; Mature: 41295

Theoretical pI: Translated: 7.84; Mature: 7.84

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAEHHDDACRLEALAELDILDTPRERAFDRLTGLCRKIFDVPMSTLTFIDGHRQWFKAA
CCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
DGMTEREGDRRPALCNLAIRQSEPLVIFDTHQDARLAGNVLVYGKPFIRFYAGAQLRISG
CCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCCHHHCCEEEECCHHHHHCCCCEEEEEC
TNVGTLCAMDTRPRVFGARDVEMLRDLAALAVDELMLRNLSLRDGLTGALSRRAFRSEGE
CCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHH
RLRALAERHRHPLTCALLDVDHFKSVNDNHGHAAGDLVLSKVVGACQNVLRASDVIGRLG
HHHHHHHHCCCCCEEEEEEHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GEEFGIILPHTSLDDAMAVLEKMRSAVADLSIESPSGPIRITASFGAVDLTPGQPFDAML
CCCEEEEECCCCHHHHHHHHHHHHHHHHCCEECCCCCCEEEEEECCEEECCCCCCHHHHH
ARADRAMYAAKNGGRNQVIAWVEAAPSIAPTLRRVFKAGQIAFNAGRSTFDCTVRALSET
HHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHH
RRAGGDLDGRPSRAVQARD
HHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SAEHHDDACRLEALAELDILDTPRERAFDRLTGLCRKIFDVPMSTLTFIDGHRQWFKAA
CCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
DGMTEREGDRRPALCNLAIRQSEPLVIFDTHQDARLAGNVLVYGKPFIRFYAGAQLRISG
CCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCCHHHCCEEEECCHHHHHCCCCEEEEEC
TNVGTLCAMDTRPRVFGARDVEMLRDLAALAVDELMLRNLSLRDGLTGALSRRAFRSEGE
CCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHH
RLRALAERHRHPLTCALLDVDHFKSVNDNHGHAAGDLVLSKVVGACQNVLRASDVIGRLG
HHHHHHHHCCCCCEEEEEEHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GEEFGIILPHTSLDDAMAVLEKMRSAVADLSIESPSGPIRITASFGAVDLTPGQPFDAML
CCCEEEEECCCCHHHHHHHHHHHHHHHHCCEECCCCCCEEEEEECCEEECCCCCCHHHHH
ARADRAMYAAKNGGRNQVIAWVEAAPSIAPTLRRVFKAGQIAFNAGRSTFDCTVRALSET
HHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHH
RRAGGDLDGRPSRAVQARD
HHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]