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The map label for this gene is ligC [H]

Identifier: 146339362

GI number: 146339362

Start: 2495370

End: 2496329

Strand: Direct

Name: ligC [H]

Synonym: BRADO2343

Alternate gene names: 146339362

Gene position: 2495370-2496329 (Clockwise)

Preceding gene: 146339361

Following gene: 146339366

Centisome position: 33.47

GC content: 63.54

Gene sequence:

>960_bases
ATGGCCAACACGATCAAGGTCGCGCTCGCCGGCGCCGGCGCCTTCGGCATCAAGCATCTCGACGGCATCAAGAACATCGA
CGGCGTCGAGGTCGTGTCGCTGGTCGGCCGCCGCTTCGACCAGACCAAGGAAGTCGCCGACAAATACGGCATCAAGCACG
TCTCGACGGAGCTTGCCGACAGCCTCAAGCTGCCGGAGGTCGACGCCGTCATTCTTTGCACCCCGACGCAGATGCACGCG
GCGCAGGCGATCGACTGCCTCAAGGCTGGCAAGCATGTGCAGGTCGAGATCCCGCTGGCGGACTCGCTGAAGGACGCGCA
GCAGGTCGTCGAATTGCAGAAGGAGACCAGGCTGGTCGCGATGTGCGGTCATACGCGGCGCTTCAATCCCAGCCACCAGT
TCGTGCACAAGAAGATCAAGGCTGGCGAGTTCCACATCCAGCAGATGGATGTGCAGACCTACTTCTTCCGCCGCACCAAC
ATGAACGCTCTGGGCCAGCCGCGCAGCTGGACCGACCACCTGCTGTGGCACCATGCCGCCCACACCGTCGACCTATTCGC
CTATCAGGCGGGCTCGCCGATCGTGAAGGCCAATGCGATCCAGGGCCCGATCCACCCGACGCTCGGCATCGCCATGGACA
TGTCGATCCAGCTCAAGGCGGCCAATGGCGCGATCTGCACCTTGTCGCTGTCGTTCAACAATGACGGCCCGCTCGGCACC
TTCTTCCGCTACATCGGCGACACCGGCACCTACATCGCCCGCTACGACGATCTGGTGAACGGCAAGGAAGAGAAGATCGA
CGTCTCCAAGGTCGACGTCTCCATGAACGGCATCGAGCTGCAGGACCGCGAGTTCTTCGCCGCGATCCGCGAGGGCCGCG
AGCCGAATGCGTCCGTCGCCCAGGTGCTGCCCTGCTACCAGGTGCTGCACGACCTCGACGAGCAGCTCGCCAAGGGTTGA

Upstream 100 bases:

>100_bases
CGAGACCAAGAAGGGCAACGCGCCGACCGTGCGTCACCGCTTCTACCATGTGCCGGCCAGCAACACCGCGGTCGGCCATG
TGATCCTGGAGAACAACTAA

Downstream 100 bases:

>100_bases
TATCAACTCCTCCTCGCGCGCGGTGTGCGCGGGGAGGACTTCTGCGGGCCGAAAGCCGGGCTGCGCCGATGTTACGGCGC
CTTGGACGGCTTCAGCTTCG

Product: 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MANTIKVALAGAGAFGIKHLDGIKNIDGVEVVSLVGRRFDQTKEVADKYGIKHVSTELADSLKLPEVDAVILCTPTQMHA
AQAIDCLKAGKHVQVEIPLADSLKDAQQVVELQKETRLVAMCGHTRRFNPSHQFVHKKIKAGEFHIQQMDVQTYFFRRTN
MNALGQPRSWTDHLLWHHAAHTVDLFAYQAGSPIVKANAIQGPIHPTLGIAMDMSIQLKAANGAICTLSLSFNNDGPLGT
FFRYIGDTGTYIARYDDLVNGKEEKIDVSKVDVSMNGIELQDREFFAAIREGREPNASVAQVLPCYQVLHDLDEQLAKG

Sequences:

>Translated_319_residues
MANTIKVALAGAGAFGIKHLDGIKNIDGVEVVSLVGRRFDQTKEVADKYGIKHVSTELADSLKLPEVDAVILCTPTQMHA
AQAIDCLKAGKHVQVEIPLADSLKDAQQVVELQKETRLVAMCGHTRRFNPSHQFVHKKIKAGEFHIQQMDVQTYFFRRTN
MNALGQPRSWTDHLLWHHAAHTVDLFAYQAGSPIVKANAIQGPIHPTLGIAMDMSIQLKAANGAICTLSLSFNNDGPLGT
FFRYIGDTGTYIARYDDLVNGKEEKIDVSKVDVSMNGIELQDREFFAAIREGREPNASVAQVLPCYQVLHDLDEQLAKG
>Mature_318_residues
ANTIKVALAGAGAFGIKHLDGIKNIDGVEVVSLVGRRFDQTKEVADKYGIKHVSTELADSLKLPEVDAVILCTPTQMHAA
QAIDCLKAGKHVQVEIPLADSLKDAQQVVELQKETRLVAMCGHTRRFNPSHQFVHKKIKAGEFHIQQMDVQTYFFRRTNM
NALGQPRSWTDHLLWHHAAHTVDLFAYQAGSPIVKANAIQGPIHPTLGIAMDMSIQLKAANGAICTLSLSFNNDGPLGTF
FRYIGDTGTYIARYDDLVNGKEEKIDVSKVDVSMNGIELQDREFFAAIREGREPNASVAQVLPCYQVLHDLDEQLAKG

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 35184; Mature: 35052

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANTIKVALAGAGAFGIKHLDGIKNIDGVEVVSLVGRRFDQTKEVADKYGIKHVSTELAD
CCCEEEEEEECCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
SLKLPEVDAVILCTPTQMHAAQAIDCLKAGKHVQVEIPLADSLKDAQQVVELQKETRLVA
HCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCEEEE
MCGHTRRFNPSHQFVHKKIKAGEFHIQQMDVQTYFFRRTNMNALGQPRSWTDHLLWHHAA
ECCCCCCCCCHHHHHHHHHCCCCEEEEEECHHEEEEEECCCCCCCCCCCHHHHHHHHHHH
HTVDLFAYQAGSPIVKANAIQGPIHPTLGIAMDMSIQLKAANGAICTLSLSFNNDGPLGT
HHEEEEEECCCCCEEEECCCCCCCCCCCCEEEEEEEEEEECCCEEEEEEEEECCCCCHHH
FFRYIGDTGTYIARYDDLVNGKEEKIDVSKVDVSMNGIELQDREFFAAIREGREPNASVA
HHHHHCCCCCEEEEHHHHHCCCHHEEEEEEEEEEECCCEECHHHHHHHHHCCCCCCCHHH
QVLPCYQVLHDLDEQLAKG
HHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ANTIKVALAGAGAFGIKHLDGIKNIDGVEVVSLVGRRFDQTKEVADKYGIKHVSTELAD
CCEEEEEEECCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
SLKLPEVDAVILCTPTQMHAAQAIDCLKAGKHVQVEIPLADSLKDAQQVVELQKETRLVA
HCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCEEEE
MCGHTRRFNPSHQFVHKKIKAGEFHIQQMDVQTYFFRRTNMNALGQPRSWTDHLLWHHAA
ECCCCCCCCCHHHHHHHHHCCCCEEEEEECHHEEEEEECCCCCCCCCCCHHHHHHHHHHH
HTVDLFAYQAGSPIVKANAIQGPIHPTLGIAMDMSIQLKAANGAICTLSLSFNNDGPLGT
HHEEEEEECCCCCEEEECCCCCCCCCCCCEEEEEEEEEEECCCEEEEEEEEECCCCCHHH
FFRYIGDTGTYIARYDDLVNGKEEKIDVSKVDVSMNGIELQDREFFAAIREGREPNASVA
HHHHHCCCCCEEEEHHHHHCCCHHEEEEEEEEEEECCCEECHHHHHHHHHCCCCCCCHHH
QVLPCYQVLHDLDEQLAKG
HHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353932; 9384377; 8407808 [H]