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The map label for this gene is ybbB [H]

Identifier: 146339278

GI number: 146339278

Start: 2404292

End: 2405227

Strand: Direct

Name: ybbB [H]

Synonym: BRADO2254

Alternate gene names: 146339278

Gene position: 2404292-2405227 (Clockwise)

Preceding gene: 146339276

Following gene: 146339279

Centisome position: 32.24

GC content: 64.42

Gene sequence:

>936_bases
ATGCTTATGGAATATCGATCCGAGCGAGATGGAGCCGGCAGCATCAATCTCGCGCGGCGTCAGCTGGGTGATCGCCCGCG
GGTGGCGACGAGCGAGGGACGGTGCTGGGACGGATTTTGGCTTGACGAGTATGGCCCGTTTCACGCCGGCCAGGGCGATC
CAATGCCCCCGCGCGACCATCATGTCGTGCTGATCGCGCGCGATCACTCGTCCTATGTGCTGCAACAACGCGCCGGCCAG
CGCTTCGAAAGTGCGTGCAGGCCTGGCGACGTGTCGATCGTTCCCGCCGGCCATGAAACGGTTTTTCGCGGTCGCCTGCC
ATCTCACCTGCGCATCGGCCTGTCGCCCGACCATCTGATCGAGATCGCAGATTCGTTGGGCCGGCGTGGCGTCTATGCGC
GGCCCAAGCTGACGAACGTTTTTCGTACCCAGGATCCGGTGCTGAACCGTCTCGGCGAGATCTTCTCGGCCGAGCTGCGG
CGTCCGTCGCATCCGACGCAGGATCTGCTGATGGAATCCGCCGTCACCGCGCTTTCGGCGCATCTGTTGCGCACCCACGC
GGCCGTGACAGAGGCGCACGGCGATTTGGCAGGTAGCAATGTCGCAGCCATCCGGCGGGCGCTGGAGTTCATGCGGCAGC
CATTGGACACGAAGATCACCTTGGCCGAGCTGGCTAATGCCTCCGGCATCAGTCGCTTCCACCTCAGCCGCATTTTCAAG
AAGCACTTTGGCCTGTCGCCGATCGCCTACCTCGAGCGGACGCGCATCGAGCGGGCGAAGGACCTGATCCAGCGTGCCGA
GATGTCGCTCGCCGACGTTGCGCAAACCGTCGGCTTTGCCGATCAGAGCCACTTCACGCGTCGCTTCAAGCACTACACGG
GGCACACGCCCGGTGCCTATTCGCGCGAGCGCGCCCGGAAGCGGCTGCCGGTCTAG

Upstream 100 bases:

>100_bases
GGTATGACAACTGACCGGAGCGAGCCTTCACATTGAACGTCGGCCAAAGTTATTTGCGCGGAGGATCAATCACTTTGCCG
AAGCTTGAGAGTCCGCGAAC

Downstream 100 bases:

>100_bases
AGGTCACGCGCATCCTGATTGTCTCGTCCGCGGCGCCTCGCGCCGCGGAGTGCCACGCCTATTCCAGCCCAGACAAATCG
CCAGAAAGAACTCGTGCCGA

Product: putative transcription regulator (AraC-type)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MLMEYRSERDGAGSINLARRQLGDRPRVATSEGRCWDGFWLDEYGPFHAGQGDPMPPRDHHVVLIARDHSSYVLQQRAGQ
RFESACRPGDVSIVPAGHETVFRGRLPSHLRIGLSPDHLIEIADSLGRRGVYARPKLTNVFRTQDPVLNRLGEIFSAELR
RPSHPTQDLLMESAVTALSAHLLRTHAAVTEAHGDLAGSNVAAIRRALEFMRQPLDTKITLAELANASGISRFHLSRIFK
KHFGLSPIAYLERTRIERAKDLIQRAEMSLADVAQTVGFADQSHFTRRFKHYTGHTPGAYSRERARKRLPV

Sequences:

>Translated_311_residues
MLMEYRSERDGAGSINLARRQLGDRPRVATSEGRCWDGFWLDEYGPFHAGQGDPMPPRDHHVVLIARDHSSYVLQQRAGQ
RFESACRPGDVSIVPAGHETVFRGRLPSHLRIGLSPDHLIEIADSLGRRGVYARPKLTNVFRTQDPVLNRLGEIFSAELR
RPSHPTQDLLMESAVTALSAHLLRTHAAVTEAHGDLAGSNVAAIRRALEFMRQPLDTKITLAELANASGISRFHLSRIFK
KHFGLSPIAYLERTRIERAKDLIQRAEMSLADVAQTVGFADQSHFTRRFKHYTGHTPGAYSRERARKRLPV
>Mature_311_residues
MLMEYRSERDGAGSINLARRQLGDRPRVATSEGRCWDGFWLDEYGPFHAGQGDPMPPRDHHVVLIARDHSSYVLQQRAGQ
RFESACRPGDVSIVPAGHETVFRGRLPSHLRIGLSPDHLIEIADSLGRRGVYARPKLTNVFRTQDPVLNRLGEIFSAELR
RPSHPTQDLLMESAVTALSAHLLRTHAAVTEAHGDLAGSNVAAIRRALEFMRQPLDTKITLAELANASGISRFHLSRIFK
KHFGLSPIAYLERTRIERAKDLIQRAEMSLADVAQTVGFADQSHFTRRFKHYTGHTPGAYSRERARKRLPV

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786251, Length=225, Percent_Identity=28.4444444444444, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002491 [H]

Pfam domain/function: PF00165 HTH_AraC; PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 34946; Mature: 34946

Theoretical pI: Translated: 10.54; Mature: 10.54

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLMEYRSERDGAGSINLARRQLGDRPRVATSEGRCWDGFWLDEYGPFHAGQGDPMPPRDH
CCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCC
HVVLIARDHSSYVLQQRAGQRFESACRPGDVSIVPAGHETVFRGRLPSHLRIGLSPDHLI
EEEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCCCCCEEECCCHHHHH
EIADSLGRRGVYARPKLTNVFRTQDPVLNRLGEIFSAELRRPSHPTQDLLMESAVTALSA
HHHHHHCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
HLLRTHAAVTEAHGDLAGSNVAAIRRALEFMRQPLDTKITLAELANASGISRFHLSRIFK
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEHHHHHCCCCHHHHHHHHHHH
KHFGLSPIAYLERTRIERAKDLIQRAEMSLADVAQTVGFADQSHFTRRFKHYTGHTPGAY
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCC
SRERARKRLPV
CHHHHHHCCCC
>Mature Secondary Structure
MLMEYRSERDGAGSINLARRQLGDRPRVATSEGRCWDGFWLDEYGPFHAGQGDPMPPRDH
CCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCC
HVVLIARDHSSYVLQQRAGQRFESACRPGDVSIVPAGHETVFRGRLPSHLRIGLSPDHLI
EEEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCCCCCEEECCCHHHHH
EIADSLGRRGVYARPKLTNVFRTQDPVLNRLGEIFSAELRRPSHPTQDLLMESAVTALSA
HHHHHHCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
HLLRTHAAVTEAHGDLAGSNVAAIRRALEFMRQPLDTKITLAELANASGISRFHLSRIFK
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEHHHHHCCCCHHHHHHHHHHH
KHFGLSPIAYLERTRIERAKDLIQRAEMSLADVAQTVGFADQSHFTRRFKHYTGHTPGAY
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCC
SRERARKRLPV
CHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]