| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is yhhJ [C]
Identifier: 146339275
GI number: 146339275
Start: 2399353
End: 2401695
Strand: Direct
Name: yhhJ [C]
Synonym: BRADO2250
Alternate gene names: 146339275
Gene position: 2399353-2401695 (Clockwise)
Preceding gene: 146339274
Following gene: 146339276
Centisome position: 32.18
GC content: 64.92
Gene sequence:
>2343_bases TTGGCGGTCGCGCTGATGAGCATGGTCTCCGGCTCGGCCTTCCTGCGCGTCGTCCGTCGCGAGTGCCATTGGCTGCTTCA CGATCGTGTCGCGCTGATCCTGATCTTCGCCGTTCCCCTGTTTGCATTTCTGGTTCTCACGACGGTCTTCAGCCACTCGG TCATCCGCGGGCTGGGCGTCACGGTCGTTGACGAAGACAGGTCGGACGCATCGAACGCCCTAGCGGAATCCATTGCGGCA TCTCCGAGCCTGCAGATTGCCGGCCGATCTGCGAGCTTGTCGGATGCGGTCGAGGACCTGCGGTCCGGCAATTCCATCTC CGCGGTCTACATCCCTCCGAATTTCGAACGTGACCTGAAGGCGCAGCGGCGGCCCCAGGTGGTCGGGTTCTACAATCAGC AATTCCTGACCGCGGCAGGCATCGCCTCCTCGGGACTCAGCGACGCGTTGACGGCGGCCGCCGCGGCCGCCGCCCCGGCG GGGCGCGCGGCGCCTGCGCCGACCGCGACCGGAACGCTGGTGAGCGAGACCATCACGCTGGTCAATCCTCAGAAGAACTA CGCCCAGTTCCTGTTGCGGACCCTGCTGCCGATGGTCATCCACGTCGTCATCACGGTGGCCGGCGGCTATTCGGTCGGAT CCGAGTTTCGTCAGCGGAATTTGAGGGAATGGATCGTGTGCGCGGACGGCAGTCCAGTCATTGCCCTCGCCGGCAAGCTC GCGCCGCTGTTCGGACTGTTCGCCGTGATGATGTTCGCGGTGCCGCTGCTGCTCGAGGGCGTGCTGGAAATCCCGTTCAA GGGCGATCTGCCGATGCTTGTGGCCTCGAGCCTGCTCCTTATCGCCTGCTATCTCTCGCTGGGCGCGCTGCTGCAGCTGT TGACGCGCGACCTCGCGACGGGACTCGGCCTGACCGGATTGCTGGTATCTCCGGCATTCGGTTATGCAGGCGTGGGCTTC CCGGTCAGCGGCATGAATCTCTTTGCGCAGGGCTTGAGCGCCATCCTGCCGCTGCGCTGGTACATGTCGATCCTGCTGGG CCAGGCCGCACGCGGTCTGCCTGTCGCGGACTCCGCCCTGTCATTTGCCATGCTCGCGGCGCTGACGGCGATCTCCATGG CGCTCACATGTCTTCGGCTGAGGGGTCTGATCCGGAGCCTTCCGGCCGCCGACGCCGGCGCGGCAGGGCAAGCCACGATC GGCGAGCGAGCGAGCGGCGTAGGCGGTGCGTTTCTGACCGAATGGCGGCGCGTGCTGGGCACCCGCAGCGCCTTCACGAT CATCATCATCGCGCCGGTCATCTATGGTCTCTATTATCCGCAGCCTTATCTCAACCAGATCCTGCGCAAGCTGCCGATCG CCGTCGTCGACAGCGACATGAGCGATGTCAGCCGCCGTCTGGCCGAAACGCTGGACGTCAGCGGCGCGTTGCGGGTCGTC GCGCGGCCCCGGACGCTCGCAGAGGCCCGCGACGTCATCGATCGCGGCCTGGCCTTCGCCGCAGTCGAGGTGCCGGCAGG AACGGAGCGTGACCTCCTCAAGGGGATCAACGTCCATGTTCCCGTCTATGCGGACGCCACCTATCTTTTCATCTTCCGGT CGACAGCGAGCGGCATCGCCACCGCGATGGGCACCTTGAGCTCCGAGCTCGTCTCGAGAGGCGGCCGTTCGGATGGCAGT CTCGTCAAGGCGAAGCTCGCCGGGACCAGCCCGGCCGATGTCCTGCTGCAGCCGATTTTCAACCCGGTTGGTGGCTATGC CAGCTATATCGTTCCCGCGGTCTTCATCCTCATTCTGCAGCAGACATTGCTGATCGGCGCGGCCATGCTGACGCGTGAGG CATTGAGCGCCGGCGGCCGCGTATTCGTCACTGTGGCGGGCCGAGGCATCGCGCATCTCACGCTTTTGATGCCAGCGCTG GCGCTGTACCTGATCGTGCTGCCGCATGTGTACGGATTTTCCACTCTCGGCCATCTGCCGGAGCTGTTCGCCCTCGCTGC GCTGTTCGTGCTCGCCACGAGCTTTCTCGGCCAGGCGATCGGCACGCTGCTCACGCGACCGGAGAACGCCACGCTGCTCT TGTTGGCGACAAGCCTGCCGCTGTTCTTCACGACCGGCTTCGCATGGCCGCGCGAAGCGATCCCCGATGTTGCTCTCGCG CTTGGCCGGATCTTTCCTGCGGACTTTGCCATCAACGGACTGGTCCGCATCAATCAGCTCGGCGCGAGCCTTTGGGAGGT CGCATCCAGCTGGATGGGGTTGTGGTGCCTGGTCGTTGTGTATTTTGGACTCGCCGTAAGCTCCGCGGGCATCACCAGGA GGAGGCTGGCACATGAAGGGTAG
Upstream 100 bases:
>100_bases CGCGCGCCACGGGTGATTTCGATCTGCGGACGTTTTCGATCCGTGCGTATCCGGTCGAGCCGGTGCCCGAGCTGCGGCCG GGCATGAGCGCCTATCTCGA
Downstream 100 bases:
>100_bases GCTTGTCGTGACGGCAGCCATCGTCGCCGCCGCGGTCGCGGGTATTGCGATCTATGACAGGCCGTCCGCCGAGCGGTCGC CGGCGATCGTAGGTGTCGTC
Product: hypothetical protein
Products: NA
Alternate protein names: ABC-Type Multidrug Transport System Permease Component; Permease Component Of ABC Transporter; Conserved Transporter; ABC-2 Type Transport System Permease Protein; ABC-Type Multidrug Transport System Protein; Transport-Related Membrane Protein; ABC Transporter Transmembrane Protein; ABC-2 Type Transporter Superfamily; ABC-2 Type Transport System Permease; ABC-2 Type Transporter Domain Protein; ABC Transporter Permease; Multidrug ABC Transporter Permease Protein; ABC-2 Type Transporter Family; Integral Membrane Protein; Multidrug ABC Transporter Permease Component; Antibiotic Transport System Permease Protein
Number of amino acids: Translated: 780; Mature: 779
Protein sequence:
>780_residues MAVALMSMVSGSAFLRVVRRECHWLLHDRVALILIFAVPLFAFLVLTTVFSHSVIRGLGVTVVDEDRSDASNALAESIAA SPSLQIAGRSASLSDAVEDLRSGNSISAVYIPPNFERDLKAQRRPQVVGFYNQQFLTAAGIASSGLSDALTAAAAAAAPA GRAAPAPTATGTLVSETITLVNPQKNYAQFLLRTLLPMVIHVVITVAGGYSVGSEFRQRNLREWIVCADGSPVIALAGKL APLFGLFAVMMFAVPLLLEGVLEIPFKGDLPMLVASSLLLIACYLSLGALLQLLTRDLATGLGLTGLLVSPAFGYAGVGF PVSGMNLFAQGLSAILPLRWYMSILLGQAARGLPVADSALSFAMLAALTAISMALTCLRLRGLIRSLPAADAGAAGQATI GERASGVGGAFLTEWRRVLGTRSAFTIIIIAPVIYGLYYPQPYLNQILRKLPIAVVDSDMSDVSRRLAETLDVSGALRVV ARPRTLAEARDVIDRGLAFAAVEVPAGTERDLLKGINVHVPVYADATYLFIFRSTASGIATAMGTLSSELVSRGGRSDGS LVKAKLAGTSPADVLLQPIFNPVGGYASYIVPAVFILILQQTLLIGAAMLTREALSAGGRVFVTVAGRGIAHLTLLMPAL ALYLIVLPHVYGFSTLGHLPELFALAALFVLATSFLGQAIGTLLTRPENATLLLLATSLPLFFTTGFAWPREAIPDVALA LGRIFPADFAINGLVRINQLGASLWEVASSWMGLWCLVVVYFGLAVSSAGITRRRLAHEG
Sequences:
>Translated_780_residues MAVALMSMVSGSAFLRVVRRECHWLLHDRVALILIFAVPLFAFLVLTTVFSHSVIRGLGVTVVDEDRSDASNALAESIAA SPSLQIAGRSASLSDAVEDLRSGNSISAVYIPPNFERDLKAQRRPQVVGFYNQQFLTAAGIASSGLSDALTAAAAAAAPA GRAAPAPTATGTLVSETITLVNPQKNYAQFLLRTLLPMVIHVVITVAGGYSVGSEFRQRNLREWIVCADGSPVIALAGKL APLFGLFAVMMFAVPLLLEGVLEIPFKGDLPMLVASSLLLIACYLSLGALLQLLTRDLATGLGLTGLLVSPAFGYAGVGF PVSGMNLFAQGLSAILPLRWYMSILLGQAARGLPVADSALSFAMLAALTAISMALTCLRLRGLIRSLPAADAGAAGQATI GERASGVGGAFLTEWRRVLGTRSAFTIIIIAPVIYGLYYPQPYLNQILRKLPIAVVDSDMSDVSRRLAETLDVSGALRVV ARPRTLAEARDVIDRGLAFAAVEVPAGTERDLLKGINVHVPVYADATYLFIFRSTASGIATAMGTLSSELVSRGGRSDGS LVKAKLAGTSPADVLLQPIFNPVGGYASYIVPAVFILILQQTLLIGAAMLTREALSAGGRVFVTVAGRGIAHLTLLMPAL ALYLIVLPHVYGFSTLGHLPELFALAALFVLATSFLGQAIGTLLTRPENATLLLLATSLPLFFTTGFAWPREAIPDVALA LGRIFPADFAINGLVRINQLGASLWEVASSWMGLWCLVVVYFGLAVSSAGITRRRLAHEG >Mature_779_residues AVALMSMVSGSAFLRVVRRECHWLLHDRVALILIFAVPLFAFLVLTTVFSHSVIRGLGVTVVDEDRSDASNALAESIAAS PSLQIAGRSASLSDAVEDLRSGNSISAVYIPPNFERDLKAQRRPQVVGFYNQQFLTAAGIASSGLSDALTAAAAAAAPAG RAAPAPTATGTLVSETITLVNPQKNYAQFLLRTLLPMVIHVVITVAGGYSVGSEFRQRNLREWIVCADGSPVIALAGKLA PLFGLFAVMMFAVPLLLEGVLEIPFKGDLPMLVASSLLLIACYLSLGALLQLLTRDLATGLGLTGLLVSPAFGYAGVGFP VSGMNLFAQGLSAILPLRWYMSILLGQAARGLPVADSALSFAMLAALTAISMALTCLRLRGLIRSLPAADAGAAGQATIG ERASGVGGAFLTEWRRVLGTRSAFTIIIIAPVIYGLYYPQPYLNQILRKLPIAVVDSDMSDVSRRLAETLDVSGALRVVA RPRTLAEARDVIDRGLAFAAVEVPAGTERDLLKGINVHVPVYADATYLFIFRSTASGIATAMGTLSSELVSRGGRSDGSL VKAKLAGTSPADVLLQPIFNPVGGYASYIVPAVFILILQQTLLIGAAMLTREALSAGGRVFVTVAGRGIAHLTLLMPALA LYLIVLPHVYGFSTLGHLPELFALAALFVLATSFLGQAIGTLLTRPENATLLLLATSLPLFFTTGFAWPREAIPDVALAL GRIFPADFAINGLVRINQLGASLWEVASSWMGLWCLVVVYFGLAVSSAGITRRRLAHEG
Specific function: Unknown
COG id: COG0842
COG function: function code V; ABC-type multidrug transport system, permease component
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 82247; Mature: 82115
Theoretical pI: Translated: 9.32; Mature: 9.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVALMSMVSGSAFLRVVRRECHWLLHDRVALILIFAVPLFAFLVLTTVFSHSVIRGLGV CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC TVVDEDRSDASNALAESIAASPSLQIAGRSASLSDAVEDLRSGNSISAVYIPPNFERDLK EEEECCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCHHHH AQRRPQVVGFYNQQFLTAAGIASSGLSDALTAAAAAAAPAGRAAPAPTATGTLVSETITL HHCCCCEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHE VNPQKNYAQFLLRTLLPMVIHVVITVAGGYSVGSEFRQRNLREWIVCADGSPVIALAGKL ECCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHEEEECCCCCHHHHHHHH APLFGLFAVMMFAVPLLLEGVLEIPFKGDLPMLVASSLLLIACYLSLGALLQLLTRDLAT HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GLGLTGLLVSPAFGYAGVGFPVSGMNLFAQGLSAILPLRWYMSILLGQAARGLPVADSAL CCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH SFAMLAALTAISMALTCLRLRGLIRSLPAADAGAAGQATIGERASGVGGAFLTEWRRVLG HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHC TRSAFTIIIIAPVIYGLYYPQPYLNQILRKLPIAVVDSDMSDVSRRLAETLDVSGALRVV CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHCCCHHHHHH ARPRTLAEARDVIDRGLAFAAVEVPAGTERDLLKGINVHVPVYADATYLFIFRSTASGIA CCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCCCEEEEEEECCEEEEEEECHHHHHH TAMGTLSSELVSRGGRSDGSLVKAKLAGTSPADVLLQPIFNPVGGYASYIVPAVFILILQ HHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH QTLLIGAAMLTREALSAGGRVFVTVAGRGIAHLTLLMPALALYLIVLPHVYGFSTLGHLP HHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ELFALAALFVLATSFLGQAIGTLLTRPENATLLLLATSLPLFFTTGFAWPREAIPDVALA HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHCCCCCCHHHHHHHHHH LGRIFPADFAINGLVRINQLGASLWEVASSWMGLWCLVVVYFGLAVSSAGITRRRLAHEG HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCC >Mature Secondary Structure AVALMSMVSGSAFLRVVRRECHWLLHDRVALILIFAVPLFAFLVLTTVFSHSVIRGLGV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC TVVDEDRSDASNALAESIAASPSLQIAGRSASLSDAVEDLRSGNSISAVYIPPNFERDLK EEEECCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCHHHH AQRRPQVVGFYNQQFLTAAGIASSGLSDALTAAAAAAAPAGRAAPAPTATGTLVSETITL HHCCCCEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHE VNPQKNYAQFLLRTLLPMVIHVVITVAGGYSVGSEFRQRNLREWIVCADGSPVIALAGKL ECCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHEEEECCCCCHHHHHHHH APLFGLFAVMMFAVPLLLEGVLEIPFKGDLPMLVASSLLLIACYLSLGALLQLLTRDLAT HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GLGLTGLLVSPAFGYAGVGFPVSGMNLFAQGLSAILPLRWYMSILLGQAARGLPVADSAL CCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH SFAMLAALTAISMALTCLRLRGLIRSLPAADAGAAGQATIGERASGVGGAFLTEWRRVLG HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHC TRSAFTIIIIAPVIYGLYYPQPYLNQILRKLPIAVVDSDMSDVSRRLAETLDVSGALRVV CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHCCCHHHHHH ARPRTLAEARDVIDRGLAFAAVEVPAGTERDLLKGINVHVPVYADATYLFIFRSTASGIA CCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCCCEEEEEEECCEEEEEEECHHHHHH TAMGTLSSELVSRGGRSDGSLVKAKLAGTSPADVLLQPIFNPVGGYASYIVPAVFILILQ HHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH QTLLIGAAMLTREALSAGGRVFVTVAGRGIAHLTLLMPALALYLIVLPHVYGFSTLGHLP HHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ELFALAALFVLATSFLGQAIGTLLTRPENATLLLLATSLPLFFTTGFAWPREAIPDVALA HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHCCCCCCHHHHHHHHHH LGRIFPADFAINGLVRINQLGASLWEVASSWMGLWCLVVVYFGLAVSSAGITRRRLAHEG HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA