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The map label for this gene is fecI [H]

Identifier: 146339253

GI number: 146339253

Start: 2369462

End: 2370214

Strand: Reverse

Name: fecI [H]

Synonym: BRADO2224

Alternate gene names: 146339253

Gene position: 2370214-2369462 (Counterclockwise)

Preceding gene: 146339263

Following gene: 146339250

Centisome position: 31.79

GC content: 62.28

Gene sequence:

>753_bases
ATGGCGATCGACAACATCAGAACGTTGCGCGACTTGATGCTTGCGAACTACAGCGTCATCGATCAGCAGCTCACGCGCCG
TCTGGGATCGGCCGATCTGGCGTCGGAGGTCCTTCAGGAGACCTATCTCAAGATCGAGTCCATGCACTCGACCGACGAGA
TCAAGAGTCCGAAGGCCTATCTTTTCCGGATCGCACTGAACATCGCCAATGACCACCGGCGCGCTCAGGCGCGGCGCCTC
ACCACCGAGGAGGTCGACGTCCTGCTCGACATTCCGGATGATCGTCCGAGCCCAGAGCGTGAAATCGAGGAGCGTTCGGA
TATCGCGCTGCTGCGACGGGCTCTGGCGGACCTCCCGGAACGGCGTCGTCAAGTGCTAATGCTGTCGCGCATCGAGGGGC
TACCTCATCGCGAGATCGCACAGCGGATGGGCGTGACTGTCCGGACGGTCGAGAGCGATCTGAAGCAGGCGGTGGAGCAC
TGCGCCGACCGTCTGAAGCGCCCCACGGTCAAATTCGGTTTTGCTGTCCGCCGTACGTCTAACCTTCAGAGACGTGTCGT
TCGGGACGGATCCATCGGGCCCAGCGTCTCCCCAAGAGCGTTGGACCGTGATCAAAAGAACCGATCGATCGCCCCGCAAG
ACTCCCCTGGCGCGACAAGCCACCGCATGGATATTGCGACTGAAGTCAGGGGAAGTGACGCTGGCCGACGCGGAGGAGCT
GCTCGAGTGGCGCGCGCGAAGCCCGGCGCATGA

Upstream 100 bases:

>100_bases
TCACTCGCCGCATTACGTTACACGCAACACATCGTCGTCACACTTCCGTAGCCCCGAAACGTTACTTTCGCCGTAAACCG
AGACTTGGGGGCACAACAAA

Downstream 100 bases:

>100_bases
ATACGCCTTCCGAGACGCTGTCAGGCTCTGGCGCATGATCGGCAAAGGCCTCGGTGAGGCACCACCGCGGCCCGGGTCGA
GGCGAAAGAACAAGCCGAAC

Product: RNA polymerase ECF-subfamily sigma-70 factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MAIDNIRTLRDLMLANYSVIDQQLTRRLGSADLASEVLQETYLKIESMHSTDEIKSPKAYLFRIALNIANDHRRAQARRL
TTEEVDVLLDIPDDRPSPEREIEERSDIALLRRALADLPERRRQVLMLSRIEGLPHREIAQRMGVTVRTVESDLKQAVEH
CADRLKRPTVKFGFAVRRTSNLQRRVVRDGSIGPSVSPRALDRDQKNRSIAPQDSPGATSHRMDIATEVRGSDAGRRGGA
ARVARAKPGA

Sequences:

>Translated_250_residues
MAIDNIRTLRDLMLANYSVIDQQLTRRLGSADLASEVLQETYLKIESMHSTDEIKSPKAYLFRIALNIANDHRRAQARRL
TTEEVDVLLDIPDDRPSPEREIEERSDIALLRRALADLPERRRQVLMLSRIEGLPHREIAQRMGVTVRTVESDLKQAVEH
CADRLKRPTVKFGFAVRRTSNLQRRVVRDGSIGPSVSPRALDRDQKNRSIAPQDSPGATSHRMDIATEVRGSDAGRRGGA
ARVARAKPGA
>Mature_249_residues
AIDNIRTLRDLMLANYSVIDQQLTRRLGSADLASEVLQETYLKIESMHSTDEIKSPKAYLFRIALNIANDHRRAQARRLT
TEEVDVLLDIPDDRPSPEREIEERSDIALLRRALADLPERRRQVLMLSRIEGLPHREIAQRMGVTVRTVESDLKQAVEHC
ADRLKRPTVKFGFAVRRTSNLQRRVVRDGSIGPSVSPRALDRDQKNRSIAPQDSPGATSHRMDIATEVRGSDAGRRGGAA
RVARAKPGA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates the fec genes for iron dicitrate transport (Probable) [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790746, Length=155, Percent_Identity=30.3225806451613, Blast_Score=76, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 28141; Mature: 28010

Theoretical pI: Translated: 10.77; Mature: 10.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIDNIRTLRDLMLANYSVIDQQLTRRLGSADLASEVLQETYLKIESMHSTDEIKSPKAY
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHCCCHHH
LFRIALNIANDHRRAQARRLTTEEVDVLLDIPDDRPSPEREIEERSDIALLRRALADLPE
HHHHHHHHHHHHHHHHHHHCCHHHHHEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
RRRQVLMLSRIEGLPHREIAQRMGVTVRTVESDLKQAVEHCADRLKRPTVKFGFAVRRTS
HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
NLQRRVVRDGSIGPSVSPRALDRDQKNRSIAPQDSPGATSHRMDIATEVRGSDAGRRGGA
HHHHHHHHCCCCCCCCCCHHHCCCHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCH
ARVARAKPGA
HHHCCCCCCC
>Mature Secondary Structure 
AIDNIRTLRDLMLANYSVIDQQLTRRLGSADLASEVLQETYLKIESMHSTDEIKSPKAY
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHCCCHHH
LFRIALNIANDHRRAQARRLTTEEVDVLLDIPDDRPSPEREIEERSDIALLRRALADLPE
HHHHHHHHHHHHHHHHHHHCCHHHHHEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
RRRQVLMLSRIEGLPHREIAQRMGVTVRTVESDLKQAVEHCADRLKRPTVKFGFAVRRTS
HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
NLQRRVVRDGSIGPSVSPRALDRDQKNRSIAPQDSPGATSHRMDIATEVRGSDAGRRGGA
HHHHHHHHCCCCCCCCCCHHHCCCHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCH
ARVARAKPGA
HHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2254251; 7610040; 9278503; 8052622 [H]