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The map label for this gene is yagI [H]

Identifier: 146339155

GI number: 146339155

Start: 2246150

End: 2246932

Strand: Reverse

Name: yagI [H]

Synonym: BRADO2113

Alternate gene names: 146339155

Gene position: 2246932-2246150 (Counterclockwise)

Preceding gene: 146339156

Following gene: 146339154

Centisome position: 30.13

GC content: 69.09

Gene sequence:

>783_bases
ATGAGCGCTCTGACCAACGCTATCGACATCCTCCGCTGCTTCTCGACCACGCGGCCCGACCTTTCCTTCGCCGACGTCCA
GGTCCTGACCGGCAAGCCGAAGAGCTCGACCTCCCGCCTGCTCCGTTCGCTGCGCGATTGCGGCCTACTCGAGCAGGACC
CGCACAGCCGCCGCTACCGCCCCGGCCTACTCACCTTCGAGCTCGGCCGGCTGCATCGCGCCCATGACGACCTGCTCGCG
ATTGCCGAGCGCGAGCTGCGCGACGTCTGCGCGCGCACCGGGCACACCGGCTACATCGCGGTGCTCGACGGCTATCAGCA
GGTCGTGCTGCGCATCGTGCCCGGCTCCAACCCGCTGCGCGTCGTCAACCCGCCGGGCCAGCGCACGCCGGCGATCGTCA
CCTCCAACGGCCGCGCGATGCTGGCCCGCCTGTCGGACCAGGAGATCCGCGCCCGCGTGCCGCTCAACTATCCGAAGGTG
CCCGCCAACTCGCCGCAGAACTTCAATGAGCTGATGGCGCGGCTGAACGAAATCCGCCGGACCGGCATCTCCGAGGCCGC
CGACGAGGCGATCGAGGGCGTCGGCTCGCAGGGATTTGCGCTGTCCAGCGGCGAGAGCGGTGAGCTGATCGGCATTGCGG
TGTCGTATTCAGTGCAGGCCACCACCGAGATCGAGCGCGCCAATGTCCGCCGCGAGCTCGGCGCGATGGCGGCGGAGCTG
CGGCGCATGACCGGCGATCCGCTGGGACAGACCATCGAGCAATTGGCTGGACTGGCCTCCTGA

Upstream 100 bases:

>100_bases
ATCGAGCAACATTCTGCCCCTAATTTCGCCTTGCGGCAGACTCCCCGTCGCTTCTAGAATTTGGCACTAGGTTCCTAAAA
ATGGAACAAACGGTATCATC

Downstream 100 bases:

>100_bases
TGCCAGGTAATAGCGCGCCGCGCGTCAACAGACTTGCGCTGTTGATCCTGCCTAGCGCGCTGCTGTTCGCGTTGTTCTTC
TTCCTGCCGATCGGACTGAT

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MSALTNAIDILRCFSTTRPDLSFADVQVLTGKPKSSTSRLLRSLRDCGLLEQDPHSRRYRPGLLTFELGRLHRAHDDLLA
IAERELRDVCARTGHTGYIAVLDGYQQVVLRIVPGSNPLRVVNPPGQRTPAIVTSNGRAMLARLSDQEIRARVPLNYPKV
PANSPQNFNELMARLNEIRRTGISEAADEAIEGVGSQGFALSSGESGELIGIAVSYSVQATTEIERANVRRELGAMAAEL
RRMTGDPLGQTIEQLAGLAS

Sequences:

>Translated_260_residues
MSALTNAIDILRCFSTTRPDLSFADVQVLTGKPKSSTSRLLRSLRDCGLLEQDPHSRRYRPGLLTFELGRLHRAHDDLLA
IAERELRDVCARTGHTGYIAVLDGYQQVVLRIVPGSNPLRVVNPPGQRTPAIVTSNGRAMLARLSDQEIRARVPLNYPKV
PANSPQNFNELMARLNEIRRTGISEAADEAIEGVGSQGFALSSGESGELIGIAVSYSVQATTEIERANVRRELGAMAAEL
RRMTGDPLGQTIEQLAGLAS
>Mature_259_residues
SALTNAIDILRCFSTTRPDLSFADVQVLTGKPKSSTSRLLRSLRDCGLLEQDPHSRRYRPGLLTFELGRLHRAHDDLLAI
AERELRDVCARTGHTGYIAVLDGYQQVVLRIVPGSNPLRVVNPPGQRTPAIVTSNGRAMLARLSDQEIRARVPLNYPKVP
ANSPQNFNELMARLNEIRRTGISEAADEAIEGVGSQGFALSSGESGELIGIAVSYSVQATTEIERANVRRELGAMAAELR
RMTGDPLGQTIEQLAGLAS

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=248, Percent_Identity=25.4032258064516, Blast_Score=86, Evalue=4e-18,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 28311; Mature: 28179

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSALTNAIDILRCFSTTRPDLSFADVQVLTGKPKSSTSRLLRSLRDCGLLEQDPHSRRYR
CCHHHHHHHHHHHHHCCCCCCCHHCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
PGLLTFELGRLHRAHDDLLAIAERELRDVCARTGHTGYIAVLDGYQQVVLRIVPGSNPLR
CCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHEEEEECCCCCCEE
VVNPPGQRTPAIVTSNGRAMLARLSDQEIRARVPLNYPKVPANSPQNFNELMARLNEIRR
EECCCCCCCCEEEECCCCEEEEECCCCHHHEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
TGISEAADEAIEGVGSQGFALSSGESGELIGIAVSYSVQATTEIERANVRRELGAMAAEL
CCCHHHHHHHHHCCCCCCEEECCCCCCCEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHH
RRMTGDPLGQTIEQLAGLAS
HHHCCCHHHHHHHHHHCCCC
>Mature Secondary Structure 
SALTNAIDILRCFSTTRPDLSFADVQVLTGKPKSSTSRLLRSLRDCGLLEQDPHSRRYR
CHHHHHHHHHHHHHCCCCCCCHHCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
PGLLTFELGRLHRAHDDLLAIAERELRDVCARTGHTGYIAVLDGYQQVVLRIVPGSNPLR
CCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHEEEEECCCCCCEE
VVNPPGQRTPAIVTSNGRAMLARLSDQEIRARVPLNYPKVPANSPQNFNELMARLNEIRR
EECCCCCCCCEEEECCCCEEEEECCCCHHHEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
TGISEAADEAIEGVGSQGFALSSGESGELIGIAVSYSVQATTEIERANVRRELGAMAAEL
CCCHHHHHHHHHCCCCCCEEECCCCCCCEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHH
RRMTGDPLGQTIEQLAGLAS
HHHCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]