| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is 146339089
Identifier: 146339089
GI number: 146339089
Start: 2178026
End: 2180710
Strand: Reverse
Name: 146339089
Synonym: BRADO2043
Alternate gene names: NA
Gene position: 2180710-2178026 (Counterclockwise)
Preceding gene: 146339090
Following gene: 146339082
Centisome position: 29.25
GC content: 71.02
Gene sequence:
>2685_bases ATGTTCGATTGGCCCCTGGACTGGATTGCCCTCCTGGTCGCGTTCGTGGCGCTGGCCTTCGCGCGCCGCACCTCGGACCG ACTGGCCGCGCTGCAGTCGCGCCTGGACAGGCTGGAGGCTGCGCGGCTCGTGGTCGCCGCACCTGAGGTGCCGGCCGCGT CGCCGCTGAGCCCACTCCAAGAGGGCGTGGCAGCCGCGCCGGTGCCGCCGCCGTTGCCGGAGGTCGCCGAGGCCGCCCTG CAGCCCGCGGCCATCACAAGCGACGAGGCGGCCGATCAGCCGCCCCCGCTGGCGCCGCCGCTGCCGCAAGCGCCGGCCGG CTTCGAGGAGCGCATCGGCACCCGCTGGGTGGTGTGGATCGGCGGACTGACGCTCGCGCTCGGCGGCTTCTTCCTGGTGC GCTATTCAATCGAGGCGGGGCTGATCGGCCCAGGGGTACGCGTTGGGCTCGGCGCGCTGTTCGCCGCGGCGCTGCTGGCC GCGGGCGAATGGACGCGGCGCAAGGAGAGCATCTCGCAGATCGCGGCGCTGCCGATCGCCAATATCCCGGCGATCCTGAC CGCCGCCGGGACGGCGGTGGCTTTCGCCACCGTCTACGCGTCCTACGCGCTATACGCCTTCCTGCCGCCGGCGATCGCCT TCGTGCTGCTCGGCCTCGTCGCGCTCGGCACCCTCGCGGCGGCGCTGCTGCACGGCCCGGCGCTCGCCGGGCTCGGCCTG GTGGCCGCCTTCACGACGCCGGTGCTGGTTTCGACCGGCCAGCCGAACTACTGGGCGCTGTACATCTATCTCGCCATCGT CACCGCCGCGGCGTTCGCGCTGGCGCGCGCGCGGCTGTGGCGGTGGCTGGCGATGACCACGATCGCGCTGTCGTTGCTGT GGACGCTGCCCGGCCTCGACATGGCCGTCGAGACAGTCGCGCCGCACGTCTTCCATATCGGCGCGGGCTTTACGCTGGCC GCCCTGATCGTCGTCTGCGGCTTCGTGTTCGGCCCGGTGGTCGACAATGACGAGGTCGAGCCGATCTCCTCCGTTGGTCT TGCGGTCTATCTGCTCGGCGCCATGCTCGTCACGCTTGCGAGCTTCCATGACGGCCTGGCGCTGATCTGCTTCACGCTGC TGGTCGCTGCGACGCTGGCGGTCGCCTGGCGCGCGCCGAGCGCAACCGGCGCGGTCGCAGCGGCGGCAGCCACGGTTTTC CTCGTGTTCGCCGAATGGGCGCTGCGCGACAATCCGGATCTGCTGGTGCTGCCCGGCGGCGCGCTGCCGGGCATGGGGCC GAACCCGCTCGGCGCATCCGTCACGTCGCACCTGACCGCAGCAGCGATCTTCGCGCTCGGCTTCGGCGGCGCGGGCTTCC TGGCGCAGGGGCGCGCGCAGAATGCCGTGGTGCCTGTGGTGTGGTCCGCGGCCGGCGTGTTCACGCCACTGGCGCTGCTG GTCGCGCTCTATGCCCGCATCGCGCATCTCGACCGCTCGATTCCGTTCGCGATCCTCGCGGTCGTGCTTGCGGCTGCCTT TGCCGTCGCGACAGAGCTTCTGACGCGGCGCGAGGAGCGTCCGGGCCTCTCCGCCTCGATCGCGCTGTTCGCGACCGGCA CGCTCGCGGCGCTGGCGCTGGCGTTGACCTTTGCGCTGGAGAAGGGCTGGCTGACGATCGCGCTGGCGCTGATGTCGCTG GGCACCGCCTGGGTCTTCGAGAACCGGCCGATTCCGTTCCTGCGCACACTCGCCGCCGCCTTCGCCGGTCTCGTGGTGCT GCGCATCGGCTATGATCCGCGCATCGTCGGCGCCGATGTCGGCACCACGCCGATCGTCAACTGGCTGTTGTGGGGTTATG GCGTGCCGGCGGCGGCGTTCTGGGGTGCGAGCACTCTCATGCGCCGCTATGGCGACGATGCGCCGTTGCGTGCGGTCGAG GCCGCGGCGATCCTGTTCACGACGCTGCTCGCGTTCATCGAGATCCGCCACGCCGTCAATGACGGCGACATGCTGGCAGT GCCGTCGCTCGCCGAAGTGGGGCTCGACGTCTGCGTCGCGCTGGCGCTCGCCATCGGCCTGGAGCGGCTGCGCGAGCGCA GCCGCAGCCTCGTGCACGACATCGGCGCCGTGATCCTCACCGGCCTCGCCGGCGGCGCGACCGTCATGGGCCTGCTGCTG TTCGAGAACCCGATGCTCTCCAACGTCGCGATCAGGGGCAGCGTGCTCAACATCCTGATTCTGGCCTACGCGTTCCCCGC GGTGCTGATGCTGCTGTTGTCCTACGCGGTCGCGGGGCGCCGTCCGCCGGCCTATGGCAACACGCTGGCGGGCGGCGCGC TGATCCTCGCGCTGTCCTATGTGAGCCTGGAGATCCGGCGCATCTATCATGGCCCCGATCTGGCGAGCGGCGTCACCAGC GCGGCCGAGCAGTACACCTACTCGATCGCCTGGCTCGCCTTCGGCGTCGTGCTGCTCGGCATCGGCGTGGTGGTGTCGTC GCAGCGCGCGCGGCTGGCCTCCGCCATCGTGATCGCGCTGACGATCCTGAAGGCCTTCCTCGTCGACATGTCCGAACTGA CCGGCGTCTGGCGCGCGCTGTCCTTCATCGGCCTCGGCCTGGTGCTGGTCGCGATCGGCTGGCTGTATCAGAAGGTGCTG TTCCGGCGGCAGCAGCAGGCCCCGCCTGCTGCGCCGGCGGCGTGA
Upstream 100 bases:
>100_bases CCCGTCACACCGATTCGCGGCACACGCCGCGGGCCGGCATGGCCCCATTCCCCTCATGACGCCAGCGGGCGCCATCGATT TCAGGACTGCGACCCCCGTG
Downstream 100 bases:
>100_bases TCGTCAGGCGGCGCGAACCGACTGCAGGAACGAAGCGACCTCCCGCTTGAGCCGGTCGCTGTCCGTGGCCAGCGACTTGG CGGCGCCGAGGACATGCGCC
Product: putative MSF permease
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 894; Mature: 894
Protein sequence:
>894_residues MFDWPLDWIALLVAFVALAFARRTSDRLAALQSRLDRLEAARLVVAAPEVPAASPLSPLQEGVAAAPVPPPLPEVAEAAL QPAAITSDEAADQPPPLAPPLPQAPAGFEERIGTRWVVWIGGLTLALGGFFLVRYSIEAGLIGPGVRVGLGALFAAALLA AGEWTRRKESISQIAALPIANIPAILTAAGTAVAFATVYASYALYAFLPPAIAFVLLGLVALGTLAAALLHGPALAGLGL VAAFTTPVLVSTGQPNYWALYIYLAIVTAAAFALARARLWRWLAMTTIALSLLWTLPGLDMAVETVAPHVFHIGAGFTLA ALIVVCGFVFGPVVDNDEVEPISSVGLAVYLLGAMLVTLASFHDGLALICFTLLVAATLAVAWRAPSATGAVAAAAATVF LVFAEWALRDNPDLLVLPGGALPGMGPNPLGASVTSHLTAAAIFALGFGGAGFLAQGRAQNAVVPVVWSAAGVFTPLALL VALYARIAHLDRSIPFAILAVVLAAAFAVATELLTRREERPGLSASIALFATGTLAALALALTFALEKGWLTIALALMSL GTAWVFENRPIPFLRTLAAAFAGLVVLRIGYDPRIVGADVGTTPIVNWLLWGYGVPAAAFWGASTLMRRYGDDAPLRAVE AAAILFTTLLAFIEIRHAVNDGDMLAVPSLAEVGLDVCVALALAIGLERLRERSRSLVHDIGAVILTGLAGGATVMGLLL FENPMLSNVAIRGSVLNILILAYAFPAVLMLLLSYAVAGRRPPAYGNTLAGGALILALSYVSLEIRRIYHGPDLASGVTS AAEQYTYSIAWLAFGVVLLGIGVVVSSQRARLASAIVIALTILKAFLVDMSELTGVWRALSFIGLGLVLVAIGWLYQKVL FRRQQQAPPAAPAA
Sequences:
>Translated_894_residues MFDWPLDWIALLVAFVALAFARRTSDRLAALQSRLDRLEAARLVVAAPEVPAASPLSPLQEGVAAAPVPPPLPEVAEAAL QPAAITSDEAADQPPPLAPPLPQAPAGFEERIGTRWVVWIGGLTLALGGFFLVRYSIEAGLIGPGVRVGLGALFAAALLA AGEWTRRKESISQIAALPIANIPAILTAAGTAVAFATVYASYALYAFLPPAIAFVLLGLVALGTLAAALLHGPALAGLGL VAAFTTPVLVSTGQPNYWALYIYLAIVTAAAFALARARLWRWLAMTTIALSLLWTLPGLDMAVETVAPHVFHIGAGFTLA ALIVVCGFVFGPVVDNDEVEPISSVGLAVYLLGAMLVTLASFHDGLALICFTLLVAATLAVAWRAPSATGAVAAAAATVF LVFAEWALRDNPDLLVLPGGALPGMGPNPLGASVTSHLTAAAIFALGFGGAGFLAQGRAQNAVVPVVWSAAGVFTPLALL VALYARIAHLDRSIPFAILAVVLAAAFAVATELLTRREERPGLSASIALFATGTLAALALALTFALEKGWLTIALALMSL GTAWVFENRPIPFLRTLAAAFAGLVVLRIGYDPRIVGADVGTTPIVNWLLWGYGVPAAAFWGASTLMRRYGDDAPLRAVE AAAILFTTLLAFIEIRHAVNDGDMLAVPSLAEVGLDVCVALALAIGLERLRERSRSLVHDIGAVILTGLAGGATVMGLLL FENPMLSNVAIRGSVLNILILAYAFPAVLMLLLSYAVAGRRPPAYGNTLAGGALILALSYVSLEIRRIYHGPDLASGVTS AAEQYTYSIAWLAFGVVLLGIGVVVSSQRARLASAIVIALTILKAFLVDMSELTGVWRALSFIGLGLVLVAIGWLYQKVL FRRQQQAPPAAPAA >Mature_894_residues MFDWPLDWIALLVAFVALAFARRTSDRLAALQSRLDRLEAARLVVAAPEVPAASPLSPLQEGVAAAPVPPPLPEVAEAAL QPAAITSDEAADQPPPLAPPLPQAPAGFEERIGTRWVVWIGGLTLALGGFFLVRYSIEAGLIGPGVRVGLGALFAAALLA AGEWTRRKESISQIAALPIANIPAILTAAGTAVAFATVYASYALYAFLPPAIAFVLLGLVALGTLAAALLHGPALAGLGL VAAFTTPVLVSTGQPNYWALYIYLAIVTAAAFALARARLWRWLAMTTIALSLLWTLPGLDMAVETVAPHVFHIGAGFTLA ALIVVCGFVFGPVVDNDEVEPISSVGLAVYLLGAMLVTLASFHDGLALICFTLLVAATLAVAWRAPSATGAVAAAAATVF LVFAEWALRDNPDLLVLPGGALPGMGPNPLGASVTSHLTAAAIFALGFGGAGFLAQGRAQNAVVPVVWSAAGVFTPLALL VALYARIAHLDRSIPFAILAVVLAAAFAVATELLTRREERPGLSASIALFATGTLAALALALTFALEKGWLTIALALMSL GTAWVFENRPIPFLRTLAAAFAGLVVLRIGYDPRIVGADVGTTPIVNWLLWGYGVPAAAFWGASTLMRRYGDDAPLRAVE AAAILFTTLLAFIEIRHAVNDGDMLAVPSLAEVGLDVCVALALAIGLERLRERSRSLVHDIGAVILTGLAGGATVMGLLL FENPMLSNVAIRGSVLNILILAYAFPAVLMLLLSYAVAGRRPPAYGNTLAGGALILALSYVSLEIRRIYHGPDLASGVTS AAEQYTYSIAWLAFGVVLLGIGVVVSSQRARLASAIVIALTILKAFLVDMSELTGVWRALSFIGLGLVLVAIGWLYQKVL FRRQQQAPPAAPAA
Specific function: Unknown
COG id: COG5373
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 93070; Mature: 93070
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: PS00213 LIPOCALIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFDWPLDWIALLVAFVALAFARRTSDRLAALQSRLDRLEAARLVVAAPEVPAASPLSPLQ CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHH EGVAAAPVPPPLPEVAEAALQPAAITSDEAADQPPPLAPPLPQAPAGFEERIGTRWVVWI CCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCEEEEHH GGLTLALGGFFLVRYSIEAGLIGPGVRVGLGALFAAALLAAGEWTRRKESISQIAALPIA HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCC NIPAILTAAGTAVAFATVYASYALYAFLPPAIAFVLLGLVALGTLAAALLHGPALAGLGL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH VAAFTTPVLVSTGQPNYWALYIYLAIVTAAAFALARARLWRWLAMTTIALSLLWTLPGLD HHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH MAVETVAPHVFHIGAGFTLAALIVVCGFVFGPVVDNDEVEPISSVGLAVYLLGAMLVTLA HHHHHHCCHHHEECCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH SFHDGLALICFTLLVAATLAVAWRAPSATGAVAAAAATVFLVFAEWALRDNPDLLVLPGG HHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCC ALPGMGPNPLGASVTSHLTAAAIFALGFGGAGFLAQGRAQNAVVPVVWSAAGVFTPLALL CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCEEHHHHHHHHHHHHHHHH VALYARIAHLDRSIPFAILAVVLAAAFAVATELLTRREERPGLSASIALFATGTLAALAL HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH ALTFALEKGWLTIALALMSLGTAWVFENRPIPFLRTLAAAFAGLVVLRIGYDPRIVGADV HHHHHHHCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHEECCCCEEECCCC GTTPIVNWLLWGYGVPAAAFWGASTLMRRYGDDAPLRAVEAAAILFTTLLAFIEIRHAVN CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC DGDMLAVPSLAEVGLDVCVALALAIGLERLRERSRSLVHDIGAVILTGLAGGATVMGLLL CCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH FENPMLSNVAIRGSVLNILILAYAFPAVLMLLLSYAVAGRRPPAYGNTLAGGALILALSY HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH VSLEIRRIYHGPDLASGVTSAAEQYTYSIAWLAFGVVLLGIGVVVSSQRARLASAIVIAL HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TILKAFLVDMSELTGVWRALSFIGLGLVLVAIGWLYQKVLFRRQQQAPPAAPAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MFDWPLDWIALLVAFVALAFARRTSDRLAALQSRLDRLEAARLVVAAPEVPAASPLSPLQ CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHH EGVAAAPVPPPLPEVAEAALQPAAITSDEAADQPPPLAPPLPQAPAGFEERIGTRWVVWI CCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCEEEEHH GGLTLALGGFFLVRYSIEAGLIGPGVRVGLGALFAAALLAAGEWTRRKESISQIAALPIA HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCC NIPAILTAAGTAVAFATVYASYALYAFLPPAIAFVLLGLVALGTLAAALLHGPALAGLGL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH VAAFTTPVLVSTGQPNYWALYIYLAIVTAAAFALARARLWRWLAMTTIALSLLWTLPGLD HHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH MAVETVAPHVFHIGAGFTLAALIVVCGFVFGPVVDNDEVEPISSVGLAVYLLGAMLVTLA HHHHHHCCHHHEECCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH SFHDGLALICFTLLVAATLAVAWRAPSATGAVAAAAATVFLVFAEWALRDNPDLLVLPGG HHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCC ALPGMGPNPLGASVTSHLTAAAIFALGFGGAGFLAQGRAQNAVVPVVWSAAGVFTPLALL CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCEEHHHHHHHHHHHHHHHH VALYARIAHLDRSIPFAILAVVLAAAFAVATELLTRREERPGLSASIALFATGTLAALAL HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH ALTFALEKGWLTIALALMSLGTAWVFENRPIPFLRTLAAAFAGLVVLRIGYDPRIVGADV HHHHHHHCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHEECCCCEEECCCC GTTPIVNWLLWGYGVPAAAFWGASTLMRRYGDDAPLRAVEAAAILFTTLLAFIEIRHAVN CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC DGDMLAVPSLAEVGLDVCVALALAIGLERLRERSRSLVHDIGAVILTGLAGGATVMGLLL CCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH FENPMLSNVAIRGSVLNILILAYAFPAVLMLLLSYAVAGRRPPAYGNTLAGGALILALSY HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH VSLEIRRIYHGPDLASGVTSAAEQYTYSIAWLAFGVVLLGIGVVVSSQRARLASAIVIAL HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TILKAFLVDMSELTGVWRALSFIGLGLVLVAIGWLYQKVLFRRQQQAPPAAPAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA