| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is 146338560
Identifier: 146338560
GI number: 146338560
Start: 1588124
End: 1589611
Strand: Direct
Name: 146338560
Synonym: BRADO1480
Alternate gene names: NA
Gene position: 1588124-1589611 (Clockwise)
Preceding gene: 146338559
Following gene: 146338567
Centisome position: 21.3
GC content: 68.35
Gene sequence:
>1488_bases GTGGCAGCAAAAGAGGCGATGCAGGCGGCCCGGCCGCGCAACGAGGCGGAGGAGACCGTCGAGGCCATTCACCGCGGCAA TGTCGATGCCGTGGTGGTGCAGGGCCCGAGCGGGCCTCAGGTCATCATGCTCCAGGGCGCGGACGCGCCCTATCACGTGC TGGTCGAGCGGATGAGCGATGGCGCGCTGACGCTCGATGCGGAGGGTAGCATCGTCTACGTCAATTCGCGGCTTTGCGCG CTGAGCGGCCTCGATGCGGACCAGCTCGTGGGGCGAAGCTTTGCGTCGCTGTTTGCCGGACCGGCGCCGCAGCAGCGTGC CGATGATGCGGCCAGCGATGCGCAACTGCGTCGCGCCGATGGCGGCGACCTGCCGGTGTCGGTGTGGATGCGTCAGATGG CGATGGGCGGCGTCGTCGCGACGCTCGTCACGCTGACCGACATGTCGGTGCAGCGCCGGGCCGAGGAGGTCGCCACCGCC GAGCGCTTCGCGCGCTCGATCCTGGAGCAGGCCACCGACGCCGTGGTCGTGCTGGCGCTCGATGGACGGATCACGCATGC GAGCTGGGTGGCGGAGCAGCTCGCCGAACGCTCGCCCGTCGGGCAGCTGTTCTCGGAGGCGTTTCCACTGGACGCGCAGA GCGCCAGCCAGCAGGGCACCTTGACGCGGTTCTCGCGCGAGAGCCTCGATCAGGCGCTGGCCACCAAGCCGTTTCACGGC GTCGAGGTCGCGCTGCGCAATCCGCGGATGTCCGGGCGCTCCTTCCTGCTGTCCGGCGGTCCGCTGGTCAACGACGCCAA GGATGCGGTCGGATCGATCGTGACCCTGACCGACATCACCGAGCGCAAGCGCGCCGAGGAGCAGCAGACCATGCTGGTCG CGGAGCTCAATCACCGGGTCAAGAATATCCTGGCGATCGTGCAGTCCGTCGCTGGCCAGACCCTGCGCACCTCGCCATCG CTGCCGGCGTTCAACAAGGCGTTCTCCGGCCGCATCCAGGCGGTCTCGATCGCCCACGATATCCTCACGCAGACGCGCTG GATCGGCATCGGCTTCAACGAACTGCTCACGACGGTGCTGGCGCCGTATGGCGTCGGCGAAGGCCGCATTGCGATCGAGG GACCGCCGGTGCTGCTCGAAGCCCGTCTGGTGCTGCCGTTGTCGATGGTGCTGCACGAGCTCGCGACCAATGCTTCCAAA TACGGTGCGCTGTCGGCGCCGCTCGGCCGGGTCGCGATCTCCTGGATTTTGCGCGACGATCGCCGCCGGCTCGAGCTGGT GTGGCTGGAGCGCGGTGGGCCGAGGATCGAGGCCGGCGGCGCGCGCGGCTTCGGCACGACGCTGATCGACCGTGTCGTTC GATTCGATCTCGACGGCGAGGCGAAGCTGGAGTTCGAGCCCGAGGGAATCCGTTGCACGCTGATCTTTGCATTGACGGCG GAAACTGTGCCCGAGCAGGTGCCGGCGTCGGCCGTGCAACCCGACTGA
Upstream 100 bases:
>100_bases GACAGCTGCCGGAGCCGCTCAAGCGGATCATCGGCGACCTCTCCAATGCGGAGAAGGTGCTCGTCGGTCTGGATATTGCT CCGAGCTGAACGGAGGTTTT
Downstream 100 bases:
>100_bases TCAGCGCGGCAGAAACGTCGCCTGGCACATCGCGCGCAGCGCGCGCTCGTCGAACGGCTTGGCCAGCCGCGGCAGGCCCC GAAACTCCGGCGGGAAGAGC
Product: signal transduction histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 495; Mature: 494
Protein sequence:
>495_residues MAAKEAMQAARPRNEAEETVEAIHRGNVDAVVVQGPSGPQVIMLQGADAPYHVLVERMSDGALTLDAEGSIVYVNSRLCA LSGLDADQLVGRSFASLFAGPAPQQRADDAASDAQLRRADGGDLPVSVWMRQMAMGGVVATLVTLTDMSVQRRAEEVATA ERFARSILEQATDAVVVLALDGRITHASWVAEQLAERSPVGQLFSEAFPLDAQSASQQGTLTRFSRESLDQALATKPFHG VEVALRNPRMSGRSFLLSGGPLVNDAKDAVGSIVTLTDITERKRAEEQQTMLVAELNHRVKNILAIVQSVAGQTLRTSPS LPAFNKAFSGRIQAVSIAHDILTQTRWIGIGFNELLTTVLAPYGVGEGRIAIEGPPVLLEARLVLPLSMVLHELATNASK YGALSAPLGRVAISWILRDDRRRLELVWLERGGPRIEAGGARGFGTTLIDRVVRFDLDGEAKLEFEPEGIRCTLIFALTA ETVPEQVPASAVQPD
Sequences:
>Translated_495_residues MAAKEAMQAARPRNEAEETVEAIHRGNVDAVVVQGPSGPQVIMLQGADAPYHVLVERMSDGALTLDAEGSIVYVNSRLCA LSGLDADQLVGRSFASLFAGPAPQQRADDAASDAQLRRADGGDLPVSVWMRQMAMGGVVATLVTLTDMSVQRRAEEVATA ERFARSILEQATDAVVVLALDGRITHASWVAEQLAERSPVGQLFSEAFPLDAQSASQQGTLTRFSRESLDQALATKPFHG VEVALRNPRMSGRSFLLSGGPLVNDAKDAVGSIVTLTDITERKRAEEQQTMLVAELNHRVKNILAIVQSVAGQTLRTSPS LPAFNKAFSGRIQAVSIAHDILTQTRWIGIGFNELLTTVLAPYGVGEGRIAIEGPPVLLEARLVLPLSMVLHELATNASK YGALSAPLGRVAISWILRDDRRRLELVWLERGGPRIEAGGARGFGTTLIDRVVRFDLDGEAKLEFEPEGIRCTLIFALTA ETVPEQVPASAVQPD >Mature_494_residues AAKEAMQAARPRNEAEETVEAIHRGNVDAVVVQGPSGPQVIMLQGADAPYHVLVERMSDGALTLDAEGSIVYVNSRLCAL SGLDADQLVGRSFASLFAGPAPQQRADDAASDAQLRRADGGDLPVSVWMRQMAMGGVVATLVTLTDMSVQRRAEEVATAE RFARSILEQATDAVVVLALDGRITHASWVAEQLAERSPVGQLFSEAFPLDAQSASQQGTLTRFSRESLDQALATKPFHGV EVALRNPRMSGRSFLLSGGPLVNDAKDAVGSIVTLTDITERKRAEEQQTMLVAELNHRVKNILAIVQSVAGQTLRTSPSL PAFNKAFSGRIQAVSIAHDILTQTRWIGIGFNELLTTVLAPYGVGEGRIAIEGPPVLLEARLVLPLSMVLHELATNASKY GALSAPLGRVAISWILRDDRRRLELVWLERGGPRIEAGGARGFGTTLIDRVVRFDLDGEAKLEFEPEGIRCTLIFALTAE TVPEQVPASAVQPD
Specific function: Photosensitive kinase that is involved in increased bacterial virulence upon exposure to light [H]
COG id: COG3920
COG function: function code T; Signal transduction histidine kinase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR013767 - InterPro: IPR013655 - InterPro: IPR011102 [H]
Pfam domain/function: PF07536 HWE_HK; PF00989 PAS; PF08447 PAS_3 [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 53172; Mature: 53041
Theoretical pI: Translated: 5.05; Mature: 5.05
Prosite motif: PS50112 PAS ; PS50113 PAC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAKEAMQAARPRNEAEETVEAIHRGNVDAVVVQGPSGPQVIMLQGADAPYHVLVERMSD CCHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHCC GALTLDAEGSIVYVNSRLCALSGLDADQLVGRSFASLFAGPAPQQRADDAASDAQLRRAD CCEEEECCCCEEEEECCEEEECCCCHHHHHHHHHHHHHCCCCCCHHCCCCCCCHHHHCCC GGDLPVSVWMRQMAMGGVVATLVTLTDMSVQRRAEEVATAERFARSILEQATDAVVVLAL CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE DGRITHASWVAEQLAERSPVGQLFSEAFPLDAQSASQQGTLTRFSRESLDQALATKPFHG CCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC VEVALRNPRMSGRSFLLSGGPLVNDAKDAVGSIVTLTDITERKRAEEQQTMLVAELNHRV EEEEECCCCCCCCEEEEECCCCCCCHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHHH KNILAIVQSVAGQTLRTSPSLPAFNKAFSGRIQAVSIAHDILTQTRWIGIGFNELLTTVL HHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCEEEEHHHHHHHHHHHEEECCHHHHHHHHH APYGVGEGRIAIEGPPVLLEARLVLPLSMVLHELATNASKYGALSAPLGRVAISWILRDD CCCCCCCCEEEECCCCEEEEHHHHHHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHCC RRRLELVWLERGGPRIEAGGARGFGTTLIDRVVRFDLDGEAKLEFEPEGIRCTLIFALTA CCEEEEEEEECCCCEEECCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCEEEEEEEEEEH ETVPEQVPASAVQPD HHHHHHCCCCCCCCC >Mature Secondary Structure AAKEAMQAARPRNEAEETVEAIHRGNVDAVVVQGPSGPQVIMLQGADAPYHVLVERMSD CHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHCC GALTLDAEGSIVYVNSRLCALSGLDADQLVGRSFASLFAGPAPQQRADDAASDAQLRRAD CCEEEECCCCEEEEECCEEEECCCCHHHHHHHHHHHHHCCCCCCHHCCCCCCCHHHHCCC GGDLPVSVWMRQMAMGGVVATLVTLTDMSVQRRAEEVATAERFARSILEQATDAVVVLAL CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE DGRITHASWVAEQLAERSPVGQLFSEAFPLDAQSASQQGTLTRFSRESLDQALATKPFHG CCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC VEVALRNPRMSGRSFLLSGGPLVNDAKDAVGSIVTLTDITERKRAEEQQTMLVAELNHRV EEEEECCCCCCCCEEEEECCCCCCCHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHHH KNILAIVQSVAGQTLRTSPSLPAFNKAFSGRIQAVSIAHDILTQTRWIGIGFNELLTTVL HHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCEEEEHHHHHHHHHHHEEECCHHHHHHHHH APYGVGEGRIAIEGPPVLLEARLVLPLSMVLHELATNASKYGALSAPLGRVAISWILRDD CCCCCCCCEEEECCCCEEEEHHHHHHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHCC RRRLELVWLERGGPRIEAGGARGFGTTLIDRVVRFDLDGEAKLEFEPEGIRCTLIFALTA CCEEEEEEEECCCCEEECCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCEEEEEEEEEEH ETVPEQVPASAVQPD HHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA