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The map label for this gene is aphA [H]

Identifier: 146338353

GI number: 146338353

Start: 1351005

End: 1352867

Strand: Direct

Name: aphA [H]

Synonym: BRADO1262

Alternate gene names: 146338353

Gene position: 1351005-1352867 (Clockwise)

Preceding gene: 146338349

Following gene: 146338354

Centisome position: 18.12

GC content: 63.66

Gene sequence:

>1863_bases
ATGAATACTCTTGCCAGTTGCATTCATAATGGCCGGCCGGCACCATGTGCGCACGACAGCCTTCCGGTCGCGCGCATCGG
GTCGTGCCAGCCGCACGGCGTGATGCTGGTTCTGACTCACGGCGTCGATGCGATCGAGCATGTCAGCGCCAATGTGAAGG
AGATCCTGGGCATCTCGGTGGCCGACGCGCTCGGCCGCAGCCCGGTCGAGATCTTCAAGGAGTCCGGGTCACGCGAGCGG
ATGCTGGAGATCCTTCGTCCCGGACGGATGTTCTTCGATAATCCGACCATGCTGACGGTCAACGGCCGGAAGTTCGAGGC
GATCTGCCACGTGCGCAGCGGCAAGCTCTTCATCGAGATCGAGCCGTATGTCGAGGCGGAGCGCGACTACGCGACGCTGG
TGGCGGAGGCGACCGAGCAGCTCGCCAAGCAGCGGTCGATCGACGGGCTTTATCAGTGCGCCGTCGAGATGATGAACTTC
GTGACCGGCTATGACCGCGTCAAGCTCTACAAGTTCGTCTCGCACGGTCACGGCCAGGTCGTCGCCGAGAAGCATTCCGA
GACGACGCGGCTGCCGGCCTCGTTCCTGCACGTCTTCTTTGCCGCTTCCGACATCCCGACCGACGCGATGGAAATCCTGT
CGACCGGAAAGACGCGTGCGAAGCCGCAGTCGGGCTCGCCGTCGGTGCCGCTGATGACGCGATCTCCCGACGGCGGCATC
GTGCCGACGGGCTCGACGCTCGACCTGACCGACGCCTGGCTGCGTGGCATCCATGAATGCGACAACGGCTATAATCGCAA
TCTCGGCGTCGAGAGCAACCTGATCTTCCCCGTGAACGTCGACGACCGCGTCTGGGGACTGTTCGTCATCCACAATTTCG
AGTGCAAATTCCTCAATTACGACAGCCGCGTGGTCATCGAGCAGATGACGATGATGTTCATCAGCAAGCTGATCGAATTG
GAGGCGCTGGAGGCGCGGATCGACGACCGCTACAAGATCGCCTCGGAGCTGATTGCGGCGGTCGACAATGGCCGTCGGAT
CATCGAGCAGATCGGCGAGTCGCGTGCCGATTCATCGTGGATCCACAAGAAGACCTGCCAGATGGTCGCCGCGCAGCTCG
CGGCGCTGTCGCCGCGGTTCTTCGTCGACGAGGAGGCCGCCAAGCCGGCCGCAGCGCTCGAGAAATTCGAAGTCGATCTG
CTGAACATGATGGACGCCGACGGCGCTGCGATCGTCAGGGCCGGACGGCACTCTCACGTGCGGCTGATCGGATCGACCCC
GGATTCGCTGACCGTGCGCGGCATCGTTGCCCAGTTCGGCGATCGCCTGCCGTCGCTTGCGGAAAGCAACTTCCGGGTGT
TCGCCACGGATGCCTTGCCAGACATGCTGCCGATCAGCGGCGAGGCTCGGGCTCGGGCTTGCGGCATGGTCGCGACGGCT
CTCGGTGACGAGAGCGGCAACTTCATCCTCTGGTTCCGCGCCGAGAACGTGATCGATGCCGAATGGGCGGGCCAGCCGCC
GAGCCGGCAGGAGCTGATGAGCCCCAAGATGTTCCGGCCGAAGACATCGTTCGCGCTGCATCGTCAGCCGCTCGACGGCG
CCTCGCGTCCATGGCTCGAAGTGGAGGTCAGGCTCGCTGCGGAATTTGGCGATGCGATTTCGGCGGTGTGGCGGAAGAGC
CTCGATCGGCGTCGGCCGGCAGACTCGCGGCGGCGCACCGAACTCGCGGGGAACATGGGTGGATACCAGGAACAGGGCCA
GAAATCTTACGGTCCCAGTTCGGGACGTCTGCTGATGGACGTCGTTGATGCGCCGCGGCTGGCCGGGTCGCTCGATTTCA
AGTCTGAATACGAACCCCTGTGA

Upstream 100 bases:

>100_bases
ACCACTTCATCAACAGTGGAAACCGTGAGTCCAAACCGCTGGTCGATCAGCCGGCATGCTTATCAGTAGCGCGAGGCTCT
GCGCTCTGCGGAGATGGACA

Downstream 100 bases:

>100_bases
GGCCGCCGCTATGTCTATCACTCTTTCAGTGCAATCCGCCGGGAACGTGGCGACGGTCGTCGTCCGCGGCGCCCTGACCA
GCGACACTCAGACGGCCTTC

Product: bacteriophytochrome protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 620; Mature: 620

Protein sequence:

>620_residues
MNTLASCIHNGRPAPCAHDSLPVARIGSCQPHGVMLVLTHGVDAIEHVSANVKEILGISVADALGRSPVEIFKESGSRER
MLEILRPGRMFFDNPTMLTVNGRKFEAICHVRSGKLFIEIEPYVEAERDYATLVAEATEQLAKQRSIDGLYQCAVEMMNF
VTGYDRVKLYKFVSHGHGQVVAEKHSETTRLPASFLHVFFAASDIPTDAMEILSTGKTRAKPQSGSPSVPLMTRSPDGGI
VPTGSTLDLTDAWLRGIHECDNGYNRNLGVESNLIFPVNVDDRVWGLFVIHNFECKFLNYDSRVVIEQMTMMFISKLIEL
EALEARIDDRYKIASELIAAVDNGRRIIEQIGESRADSSWIHKKTCQMVAAQLAALSPRFFVDEEAAKPAAALEKFEVDL
LNMMDADGAAIVRAGRHSHVRLIGSTPDSLTVRGIVAQFGDRLPSLAESNFRVFATDALPDMLPISGEARARACGMVATA
LGDESGNFILWFRAENVIDAEWAGQPPSRQELMSPKMFRPKTSFALHRQPLDGASRPWLEVEVRLAAEFGDAISAVWRKS
LDRRRPADSRRRTELAGNMGGYQEQGQKSYGPSSGRLLMDVVDAPRLAGSLDFKSEYEPL

Sequences:

>Translated_620_residues
MNTLASCIHNGRPAPCAHDSLPVARIGSCQPHGVMLVLTHGVDAIEHVSANVKEILGISVADALGRSPVEIFKESGSRER
MLEILRPGRMFFDNPTMLTVNGRKFEAICHVRSGKLFIEIEPYVEAERDYATLVAEATEQLAKQRSIDGLYQCAVEMMNF
VTGYDRVKLYKFVSHGHGQVVAEKHSETTRLPASFLHVFFAASDIPTDAMEILSTGKTRAKPQSGSPSVPLMTRSPDGGI
VPTGSTLDLTDAWLRGIHECDNGYNRNLGVESNLIFPVNVDDRVWGLFVIHNFECKFLNYDSRVVIEQMTMMFISKLIEL
EALEARIDDRYKIASELIAAVDNGRRIIEQIGESRADSSWIHKKTCQMVAAQLAALSPRFFVDEEAAKPAAALEKFEVDL
LNMMDADGAAIVRAGRHSHVRLIGSTPDSLTVRGIVAQFGDRLPSLAESNFRVFATDALPDMLPISGEARARACGMVATA
LGDESGNFILWFRAENVIDAEWAGQPPSRQELMSPKMFRPKTSFALHRQPLDGASRPWLEVEVRLAAEFGDAISAVWRKS
LDRRRPADSRRRTELAGNMGGYQEQGQKSYGPSSGRLLMDVVDAPRLAGSLDFKSEYEPL
>Mature_620_residues
MNTLASCIHNGRPAPCAHDSLPVARIGSCQPHGVMLVLTHGVDAIEHVSANVKEILGISVADALGRSPVEIFKESGSRER
MLEILRPGRMFFDNPTMLTVNGRKFEAICHVRSGKLFIEIEPYVEAERDYATLVAEATEQLAKQRSIDGLYQCAVEMMNF
VTGYDRVKLYKFVSHGHGQVVAEKHSETTRLPASFLHVFFAASDIPTDAMEILSTGKTRAKPQSGSPSVPLMTRSPDGGI
VPTGSTLDLTDAWLRGIHECDNGYNRNLGVESNLIFPVNVDDRVWGLFVIHNFECKFLNYDSRVVIEQMTMMFISKLIEL
EALEARIDDRYKIASELIAAVDNGRRIIEQIGESRADSSWIHKKTCQMVAAQLAALSPRFFVDEEAAKPAAALEKFEVDL
LNMMDADGAAIVRAGRHSHVRLIGSTPDSLTVRGIVAQFGDRLPSLAESNFRVFATDALPDMLPISGEARARACGMVATA
LGDESGNFILWFRAENVIDAEWAGQPPSRQELMSPKMFRPKTSFALHRQPLDGASRPWLEVEVRLAAEFGDAISAVWRKS
LDRRRPADSRRRTELAGNMGGYQEQGQKSYGPSSGRLLMDVVDAPRLAGSLDFKSEYEPL

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG4251

COG function: function code T; Bacteriophytochrome (light-regulated signal transduction histidine kinase)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 68506; Mature: 68506

Theoretical pI: Translated: 6.22; Mature: 6.22

Prosite motif: PS50046 PHYTOCHROME_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTLASCIHNGRPAPCAHDSLPVARIGSCQPHGVMLVLTHGVDAIEHVSANVKEILGISV
CCHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCEEEEEECCCHHHHHHHCCHHHHHHHHH
ADALGRSPVEIFKESGSRERMLEILRPGRMFFDNPTMLTVNGRKFEAICHVRSGKLFIEI
HHHHCCCHHHHHHCCCCHHHHHHHHCCCCEEECCCEEEEECCCEEEEEEEEECCEEEEEE
EPYVEAERDYATLVAEATEQLAKQRSIDGLYQCAVEMMNFVTGYDRVKLYKFVSHGHGQV
CCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCE
VAEKHSETTRLPASFLHVFFAASDIPTDAMEILSTGKTRAKPQSGSPSVPLMTRSPDGGI
EEECCCCHHCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCE
VPTGSTLDLTDAWLRGIHECDNGYNRNLGVESNLIFPVNVDDRVWGLFVIHNFECKFLNY
ECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCEEEEEEEEEEEEEEECC
DSRVVIEQMTMMFISKLIELEALEARIDDRYKIASELIAAVDNGRRIIEQIGESRADSSW
CCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHH
IHKKTCQMVAAQLAALSPRFFVDEEAAKPAAALEKFEVDLLNMMDADGAAIVRAGRHSHV
HHHHHHHHHHHHHHHCCCCEEECHHHCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCEE
RLIGSTPDSLTVRGIVAQFGDRLPSLAESNFRVFATDALPDMLPISGEARARACGMVATA
EEEECCCCCEEHHHHHHHHHHHCHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHH
LGDESGNFILWFRAENVIDAEWAGQPPSRQELMSPKMFRPKTSFALHRQPLDGASRPWLE
HCCCCCCEEEEEECCCEECCCCCCCCCCHHHHCCCCCCCCCCCHHEECCCCCCCCCCCEE
VEVRLAAEFGDAISAVWRKSLDRRRPADSRRRTELAGNMGGYQEQGQKSYGPSSGRLLMD
EEEEEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHCCCCCCCCCCCEEEE
VVDAPRLAGSLDFKSEYEPL
ECCCCHHCCCCCCCCCCCCC
>Mature Secondary Structure
MNTLASCIHNGRPAPCAHDSLPVARIGSCQPHGVMLVLTHGVDAIEHVSANVKEILGISV
CCHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCEEEEEECCCHHHHHHHCCHHHHHHHHH
ADALGRSPVEIFKESGSRERMLEILRPGRMFFDNPTMLTVNGRKFEAICHVRSGKLFIEI
HHHHCCCHHHHHHCCCCHHHHHHHHCCCCEEECCCEEEEECCCEEEEEEEEECCEEEEEE
EPYVEAERDYATLVAEATEQLAKQRSIDGLYQCAVEMMNFVTGYDRVKLYKFVSHGHGQV
CCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCE
VAEKHSETTRLPASFLHVFFAASDIPTDAMEILSTGKTRAKPQSGSPSVPLMTRSPDGGI
EEECCCCHHCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCE
VPTGSTLDLTDAWLRGIHECDNGYNRNLGVESNLIFPVNVDDRVWGLFVIHNFECKFLNY
ECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCEEEEEEEEEEEEEEECC
DSRVVIEQMTMMFISKLIELEALEARIDDRYKIASELIAAVDNGRRIIEQIGESRADSSW
CCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHH
IHKKTCQMVAAQLAALSPRFFVDEEAAKPAAALEKFEVDLLNMMDADGAAIVRAGRHSHV
HHHHHHHHHHHHHHHCCCCEEECHHHCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCEE
RLIGSTPDSLTVRGIVAQFGDRLPSLAESNFRVFATDALPDMLPISGEARARACGMVATA
EEEECCCCCEEHHHHHHHHHHHCHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHH
LGDESGNFILWFRAENVIDAEWAGQPPSRQELMSPKMFRPKTSFALHRQPLDGASRPWLE
HCCCCCCEEEEEECCCEECCCCCCCCCCHHHHCCCCCCCCCCCHHEECCCCCCCCCCCEE
VEVRLAAEFGDAISAVWRKSLDRRRPADSRRRTELAGNMGGYQEQGQKSYGPSSGRLLMD
EEEEEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHCCCCCCCCCCCEEEE
VVDAPRLAGSLDFKSEYEPL
ECCCCHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]