| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is 146338334
Identifier: 146338334
GI number: 146338334
Start: 1321866
End: 1324337
Strand: Direct
Name: 146338334
Synonym: BRADO1242
Alternate gene names: NA
Gene position: 1321866-1324337 (Clockwise)
Preceding gene: 146338333
Following gene: 146338335
Centisome position: 17.73
GC content: 62.66
Gene sequence:
>2472_bases ATGAGCCCGGCGCCGGACAATTGGGCTGTCGTTATCGGCATCGATCAGTACGACGTGGCCGAGGCATGCCTCAATGGCGC GGTGAACGACGCCTTGGCGATGCGCAAATGGCTGCTCGATCCCGCAGGCGGCGCGGTGTCCGAACGGCAATTGTTCCTGC TGCTCAGTCCCAAACCAGGTCGGAACCTGGGCGACATCAAATCACTTCCCGCCAGCCGCGCCAATGCGATCACCGTCATC GAGCGCGTGCTCGCGAAGAGCCGAGGCCGGGGCGACCGCTTCTTCTTCCATTTTTCCGGCCACGGTCTCAGTGCGCGGAT CAATGCGACAAACCAGAGTGGAATGGCTTTTGCCGATTTCACTGAATTGCTGACGGACAACTCCCTAACGGTCCAGGCGC TGTTCGACCTCTTCCAGTCAACACAATTCAAGGAGCAATTCTTCTTCATCGACGGCTGCCGCAATGCGCCGTTCGGCTCG GATCGCATCCTGGGCAGTTACCCCAAACCGCGCGCTGCGCAGCCTCCGGTGAGCCCGCAGTTCGGAATGTACGCAACAGC GCCTATGTTGAAGGCCAACGAAGTCGACGAACGAGGTGCGTTCACGCAGGCTCTGCTCGACGGCCTTGGCGGTGAAGGAA GCGCCAAGCGATGGGATTCGAACAATGCAGCGTATGTCATCCGCTGGAGTACATTGTTCAGTTACGTGCATGGCGTCGTA ACGGCTCGCAAGCTCAAAGCTGGGGCGTTCATCCAGACGCCGCGCCGTTTCGGCGAGACGGCTGGCGAAGACCCAATCCT GGCAAGCAAGCCGCCGGAGGGGTTCGGGCAGGTGCGGTTGAGTGTAAAATTGGCGCCCAAGGACGCGCTGGGGCACAGCA GTGTGCTGGTGCGAGACCTCTCCGGTGAGATCAAGCGCGAGCCGAAGCCGATAAAAGGCTTGCCCGTGTGCTTCGATCTG ACGCCGCGTTTGTATGGCGTCGACGTCGAGGCCGATGGCTGGGAGCGTGTCGGCAACGTCAGATCCGTCGATCTCTACGA ACCATGTGAGATCGACATTACACTCGCTCGTTCGCCGGCGAAGATCATCACTCAAGCGGGCGAGCGACGAGAGCTTTGGA ACGATGACACAGCAGAGTCCCTCGATGTCGATGCTGATGAATCCTGGGCAAGAGCAACCAGCTTTTCGGTCGCGCCGAGC TCCTTGACGGTCGAATCGGGTGACCGTCTCGCGACAGTCGAAATCGCCGACGAAGCAGGTCGCGTGCTTGAAACCCATCG TTGGGCCGTCAGATTGGCGCCCTGTCCGCCGGGCTTCTATCGCGCAAGACTGCTCTCCCCGGAAGGAGAGGCCACCGAAG AACTGGTGCAGGTCGGCAAGCACCAATCGCTTCACGTCGCGGTGACCGCGCCGCCCCCGGCAAGTCCGCTCCTGCAGCAT TTGATCGAGACCGTTGGATTCCGGCGGGAGAAGGACGGGACCGTGTCGGTGTCGGCGAGCGTGGGCCCGTCGGCATCGCT CCGTTTGTCCACCGTGCTGGCGCTATCGGCCGCGGCCGCCGCAGAGACCGGATCAAAGTTCGGACAGCGGCTTCGCGCTG TCGGCATTCCGGCCTTTTCCGCAATCACCGGCGCGGCTAGCGGTGTACAGATCGTCGCAGGCAGTGATGACGGCACGGAC TGGATCGGCCGGTTACGGGTCGGCGTCTGGTCGCTTGACGGCACCTCGGAAGCATCGCAAGCGTTGGGTCGCCTCCCGGA CAACGCTGAGATCGCGACCGCGGCCTTCGCCCGCGCACCGGGGGCCTGTCAACTCACCTTGCAAGACGTCGGGCAGTCTG CGTCTCAATTGACACTGCCACTCGTGGTCCTGCCCGGTCGGGTTACGTTGCTGGTCATCACGCGCGATCGCGACGGGCGG ATCGACGTTCATCTCTATATGCCGGCTGTGACCGGTCCACAGGCGCAGGAGAGGAGTTTCCGTGACCAGGAGTTCGCCGA CAGCAACTTCGCGGCACTGAGGCGCATCGAACTGATGCAGCGCGCCGTTGCCAACGGCCGCATTAGCCCGACCGCGCCCG AGATCGATTTGCTGTTGTGGGACAAGTGGCGTGATCCCGTGGCAGGCTGCCTTGGCGGCTATCTGGGCCGTCGGCGCGGC GACGCCCTCCAAAGAAGCTATACTCTTCGAAGTCTGGAGGAGGCGTCAGCAAACCTCGTCAGGTTTTTTGGATTGCTGCC GGACAGCCATATCCTTCACGGCTGGGTGCTGGAGCAGGTCGGAAAAGCAGGTGCTGCCGCGTCTTACGCTGCGGCACTCG ATGCCGGATTGCCGTTGTTCCGCGACGGAGTTGCATTGCTCGAATCCGCCGTGGCCCGACTTGGGTTGCAACATCCTCGT GTGCCGGCACTCGCGGCGATCGCGGGGAGGCCGCCGGCCGATCCGCTCTGGTCGGTAACCATGCGGGGGTAG
Upstream 100 bases:
>100_bases AGGCCGGCGCCATGGCGGCAAGGGAGCTGAAGTCGTCCGGGCTGCCCGACGGCGCCAAGGCACTCACGCGTCGCGCGGCC ATGCTGCGCATCGGCAATAC
Downstream 100 bases:
>100_bases ACGGGGGACATCATGACGAATGTGAGGCGACTGGATCCGCGTGTTGAGACGGCAGCCGCTAGCCGAATCCCGTCGGACTG GCGAGATTCCGAGGAATCTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 823; Mature: 822
Protein sequence:
>823_residues MSPAPDNWAVVIGIDQYDVAEACLNGAVNDALAMRKWLLDPAGGAVSERQLFLLLSPKPGRNLGDIKSLPASRANAITVI ERVLAKSRGRGDRFFFHFSGHGLSARINATNQSGMAFADFTELLTDNSLTVQALFDLFQSTQFKEQFFFIDGCRNAPFGS DRILGSYPKPRAAQPPVSPQFGMYATAPMLKANEVDERGAFTQALLDGLGGEGSAKRWDSNNAAYVIRWSTLFSYVHGVV TARKLKAGAFIQTPRRFGETAGEDPILASKPPEGFGQVRLSVKLAPKDALGHSSVLVRDLSGEIKREPKPIKGLPVCFDL TPRLYGVDVEADGWERVGNVRSVDLYEPCEIDITLARSPAKIITQAGERRELWNDDTAESLDVDADESWARATSFSVAPS SLTVESGDRLATVEIADEAGRVLETHRWAVRLAPCPPGFYRARLLSPEGEATEELVQVGKHQSLHVAVTAPPPASPLLQH LIETVGFRREKDGTVSVSASVGPSASLRLSTVLALSAAAAAETGSKFGQRLRAVGIPAFSAITGAASGVQIVAGSDDGTD WIGRLRVGVWSLDGTSEASQALGRLPDNAEIATAAFARAPGACQLTLQDVGQSASQLTLPLVVLPGRVTLLVITRDRDGR IDVHLYMPAVTGPQAQERSFRDQEFADSNFAALRRIELMQRAVANGRISPTAPEIDLLLWDKWRDPVAGCLGGYLGRRRG DALQRSYTLRSLEEASANLVRFFGLLPDSHILHGWVLEQVGKAGAAASYAAALDAGLPLFRDGVALLESAVARLGLQHPR VPALAAIAGRPPADPLWSVTMRG
Sequences:
>Translated_823_residues MSPAPDNWAVVIGIDQYDVAEACLNGAVNDALAMRKWLLDPAGGAVSERQLFLLLSPKPGRNLGDIKSLPASRANAITVI ERVLAKSRGRGDRFFFHFSGHGLSARINATNQSGMAFADFTELLTDNSLTVQALFDLFQSTQFKEQFFFIDGCRNAPFGS DRILGSYPKPRAAQPPVSPQFGMYATAPMLKANEVDERGAFTQALLDGLGGEGSAKRWDSNNAAYVIRWSTLFSYVHGVV TARKLKAGAFIQTPRRFGETAGEDPILASKPPEGFGQVRLSVKLAPKDALGHSSVLVRDLSGEIKREPKPIKGLPVCFDL TPRLYGVDVEADGWERVGNVRSVDLYEPCEIDITLARSPAKIITQAGERRELWNDDTAESLDVDADESWARATSFSVAPS SLTVESGDRLATVEIADEAGRVLETHRWAVRLAPCPPGFYRARLLSPEGEATEELVQVGKHQSLHVAVTAPPPASPLLQH LIETVGFRREKDGTVSVSASVGPSASLRLSTVLALSAAAAAETGSKFGQRLRAVGIPAFSAITGAASGVQIVAGSDDGTD WIGRLRVGVWSLDGTSEASQALGRLPDNAEIATAAFARAPGACQLTLQDVGQSASQLTLPLVVLPGRVTLLVITRDRDGR IDVHLYMPAVTGPQAQERSFRDQEFADSNFAALRRIELMQRAVANGRISPTAPEIDLLLWDKWRDPVAGCLGGYLGRRRG DALQRSYTLRSLEEASANLVRFFGLLPDSHILHGWVLEQVGKAGAAASYAAALDAGLPLFRDGVALLESAVARLGLQHPR VPALAAIAGRPPADPLWSVTMRG >Mature_822_residues SPAPDNWAVVIGIDQYDVAEACLNGAVNDALAMRKWLLDPAGGAVSERQLFLLLSPKPGRNLGDIKSLPASRANAITVIE RVLAKSRGRGDRFFFHFSGHGLSARINATNQSGMAFADFTELLTDNSLTVQALFDLFQSTQFKEQFFFIDGCRNAPFGSD RILGSYPKPRAAQPPVSPQFGMYATAPMLKANEVDERGAFTQALLDGLGGEGSAKRWDSNNAAYVIRWSTLFSYVHGVVT ARKLKAGAFIQTPRRFGETAGEDPILASKPPEGFGQVRLSVKLAPKDALGHSSVLVRDLSGEIKREPKPIKGLPVCFDLT PRLYGVDVEADGWERVGNVRSVDLYEPCEIDITLARSPAKIITQAGERRELWNDDTAESLDVDADESWARATSFSVAPSS LTVESGDRLATVEIADEAGRVLETHRWAVRLAPCPPGFYRARLLSPEGEATEELVQVGKHQSLHVAVTAPPPASPLLQHL IETVGFRREKDGTVSVSASVGPSASLRLSTVLALSAAAAAETGSKFGQRLRAVGIPAFSAITGAASGVQIVAGSDDGTDW IGRLRVGVWSLDGTSEASQALGRLPDNAEIATAAFARAPGACQLTLQDVGQSASQLTLPLVVLPGRVTLLVITRDRDGRI DVHLYMPAVTGPQAQERSFRDQEFADSNFAALRRIELMQRAVANGRISPTAPEIDLLLWDKWRDPVAGCLGGYLGRRRGD ALQRSYTLRSLEEASANLVRFFGLLPDSHILHGWVLEQVGKAGAAASYAAALDAGLPLFRDGVALLESAVARLGLQHPRV PALAAIAGRPPADPLWSVTMRG
Specific function: Unknown
COG id: COG4249
COG function: function code R; Uncharacterized protein containing caspase domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 88365; Mature: 88234
Theoretical pI: Translated: 6.66; Mature: 6.66
Prosite motif: PS50208 CASPASE_P20
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPAPDNWAVVIGIDQYDVAEACLNGAVNDALAMRKWLLDPAGGAVSERQLFLLLSPKPG CCCCCCCCEEEEECCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCC RNLGDIKSLPASRANAITVIERVLAKSRGRGDRFFFHFSGHGLSARINATNQSGMAFADF CCCCHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEEECCCCCCCCHHHH TELLTDNSLTVQALFDLFQSTQFKEQFFFIDGCRNAPFGSDRILGSYPKPRAAQPPVSPQ HHHHCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC FGMYATAPMLKANEVDERGAFTQALLDGLGGEGSAKRWDSNNAAYVIRWSTLFSYVHGVV CCCEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHH TARKLKAGAFIQTPRRFGETAGEDPILASKPPEGFGQVRLSVKLAPKDALGHSSVLVRDL HHHHHCCCCEEECCHHHCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCEEEECC SGEIKREPKPIKGLPVCFDLTPRLYGVDVEADGWERVGNVRSVDLYEPCEIDITLARSPA CCHHCCCCCCCCCCEEEEECCCCEEEEEECCCCHHHHCCEEEEECCCCCEEEEEECCCCH KIITQAGERRELWNDDTAESLDVDADESWARATSFSVAPSSLTVESGDRLATVEIADEAG HHHHCCCCHHHCCCCCCCCCCCCCCCCCHHHHCCCEECCCEEEECCCCEEEEEEECCCCC RVLETHRWAVRLAPCPPGFYRARLLSPEGEATEELVQVGKHQSLHVAVTAPPPASPLLQH HHHHCCCEEEEECCCCCCHHEEEEECCCCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHH LIETVGFRREKDGTVSVSASVGPSASLRLSTVLALSAAAAAETGSKFGQRLRAVGIPAFS HHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH AITGAASGVQIVAGSDDGTDWIGRLRVGVWSLDGTSEASQALGRLPDNAEIATAAFARAP HHHCCCCCEEEEECCCCCHHHHHEEEEEEEECCCCCHHHHHHHCCCCCCHHHHHHHHCCC GACQLTLQDVGQSASQLTLPLVVLPGRVTLLVITRDRDGRIDVHLYMPAVTGPQAQERSF CCEEEEHHHHCCCHHHEEEEEEEECCCEEEEEEEECCCCEEEEEEEECCCCCCCHHHHCC RDQEFADSNFAALRRIELMQRAVANGRISPTAPEIDLLLWDKWRDPVAGCLGGYLGRRRG CCHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC DALQRSYTLRSLEEASANLVRFFGLLPDSHILHGWVLEQVGKAGAAASYAAALDAGLPLF HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHH RDGVALLESAVARLGLQHPRVPALAAIAGRPPADPLWSVTMRG HHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCEEEEECC >Mature Secondary Structure SPAPDNWAVVIGIDQYDVAEACLNGAVNDALAMRKWLLDPAGGAVSERQLFLLLSPKPG CCCCCCCEEEEECCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCC RNLGDIKSLPASRANAITVIERVLAKSRGRGDRFFFHFSGHGLSARINATNQSGMAFADF CCCCHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEEECCCCCCCCHHHH TELLTDNSLTVQALFDLFQSTQFKEQFFFIDGCRNAPFGSDRILGSYPKPRAAQPPVSPQ HHHHCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC FGMYATAPMLKANEVDERGAFTQALLDGLGGEGSAKRWDSNNAAYVIRWSTLFSYVHGVV CCCEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHH TARKLKAGAFIQTPRRFGETAGEDPILASKPPEGFGQVRLSVKLAPKDALGHSSVLVRDL HHHHHCCCCEEECCHHHCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCEEEECC SGEIKREPKPIKGLPVCFDLTPRLYGVDVEADGWERVGNVRSVDLYEPCEIDITLARSPA CCHHCCCCCCCCCCEEEEECCCCEEEEEECCCCHHHHCCEEEEECCCCCEEEEEECCCCH KIITQAGERRELWNDDTAESLDVDADESWARATSFSVAPSSLTVESGDRLATVEIADEAG HHHHCCCCHHHCCCCCCCCCCCCCCCCCHHHHCCCEECCCEEEECCCCEEEEEEECCCCC RVLETHRWAVRLAPCPPGFYRARLLSPEGEATEELVQVGKHQSLHVAVTAPPPASPLLQH HHHHCCCEEEEECCCCCCHHEEEEECCCCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHH LIETVGFRREKDGTVSVSASVGPSASLRLSTVLALSAAAAAETGSKFGQRLRAVGIPAFS HHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH AITGAASGVQIVAGSDDGTDWIGRLRVGVWSLDGTSEASQALGRLPDNAEIATAAFARAP HHHCCCCCEEEEECCCCCHHHHHEEEEEEEECCCCCHHHHHHHCCCCCCHHHHHHHHCCC GACQLTLQDVGQSASQLTLPLVVLPGRVTLLVITRDRDGRIDVHLYMPAVTGPQAQERSF CCEEEEHHHHCCCHHHEEEEEEEECCCEEEEEEEECCCCEEEEEEEECCCCCCCHHHHCC RDQEFADSNFAALRRIELMQRAVANGRISPTAPEIDLLLWDKWRDPVAGCLGGYLGRRRG CCHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC DALQRSYTLRSLEEASANLVRFFGLLPDSHILHGWVLEQVGKAGAAASYAAALDAGLPLF HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHH RDGVALLESAVARLGLQHPRVPALAAIAGRPPADPLWSVTMRG HHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA