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The map label for this gene is yciR [C]

Identifier: 146338270

GI number: 146338270

Start: 1244814

End: 1247183

Strand: Direct

Name: yciR [C]

Synonym: BRADO1174

Alternate gene names: 146338270

Gene position: 1244814-1247183 (Clockwise)

Preceding gene: 146338269

Following gene: 146338271

Centisome position: 16.69

GC content: 65.82

Gene sequence:

>2370_bases
TTGCGCACCGAACCGAACGCGTGCGTCCGAATGCAGCTTGCCAGTCAGACCAGAGAAGACGAACAGAAGTTGTCGCCGTC
CATCCAGGCGGCTCTCGTCGACTCTCTCTTCCAGGATCCAGGTCCGATGTTCGCCGGCGCACTCTGCGCCGCCGTCGCGG
CCGTCATGACCGCCATGAAGAGCGGCGATTCCAATCTGTGGCCATGCGCGGTCATGCTCATCGTCGCGGGCGGGCTTCGC
TCGCTCGACATGCGCTACTACCGGCACCTCTGTGACCGCGGGCGGCTGACACAGGAGGCGGTCGCGCGCTGGGAGATCCG
CTATCAGATCGGCGCGATGCTGTACGCGCTGGTGCTCGGCGTCTGGTGCGTCGTCGCCGTGGTCGACAACAGCGACCCGG
TCGTCCACCTGATCGCGATCTCGGTCACGCTCTGCTACATGTCGGCGGGGGCGGGGCGGACCTATGGCCGTCCCTGGATC
TTCCACGTCCAGATCCTGCTCGCCTGCGGACCCCTGGCCATGGCGCTCGCGCTGCATGGCAGTCCCTACTACATGGGGAT
GGCGGCGTTCTGCGTGCTGTTCTTCATGTCGCTCAAGCACATCTCGACCAATCTGCAGCGCATCTTCGTCCAGGCCTTCG
TGGCGCGCGAGGGCGAGGCGGCGCTGGCCAAGCAGTTCGACACCGCGCTCAACAACATGCCGCACGGGCTGTGCATGTTC
GGGCCCGACGGGCGTCTCGCCGTCATGAATCACCGCTTCGGCGAGATGATGAGCCTGCCGGAGGACATCCTGCAGCGCGG
CGGCAAGGCGGCCGACATCATCAATGCCTGCGTCATCTCCGGTGCAATCTCGGCCCCCAGCGGCCGCATGATCCTGTCGG
AGATCGAGCATACCAAGACGCATAACATCATCACCAGCGATCCCGACATCGTGCGCGACCGCTCGCTGTCATGGACCTTC
CAGCCGATGGCCGATGGCGGCGCTGTCGTCCTGCTCGAGGACATCACCGAGCGCCAGCATGCCGAGGCGCGGATCTCGCA
CCTCGCCCGCTACGACGAGCTCACCACCCTGCCGAACCGCGTCAGCTTCCGCGACGAGATCGAGCGCCTGCTCAAGATCC
CGCAGCGCCACGGCGAGCTGTCGGCGCTGCTGTTCGTCGATCTCGACCGCTTCAAGCAGGTCAACGACACGCTCGGCCAT
CCCTGCGGCGATCAATTGCTGTGCGCGGTGTCCGAGCGGCTGCGCGACATGCTGCGCCCGGAGGATTTCGTCGCCCGCTT
CGGCGGCGACGAATTCGTCGTGTTCCAGCGCAACATCCGCTCCAATGACGACGCCGCGGTGCTGGCGCGCCGCATCGTCG
ACCAGCTCAGCGAGCGCTACAAGATCGACAATCACCTGGTCGAGATCGGCGCCAGCGTCGGCATCGCCATGACGGCGCCG
GGGATCAGCGCCGATACGCTACTCAAGAACGCCGACATGGCGCTGTATCGCGCCAAGGCCGAGGGCAGGGGCACGTTCTG
CTTCTTCCGCGACGAACTCGCCCAGACCGTCGAGGCGCGCCGCATCCTCGAGCTCGATCTGCGCAAGGCGCTGGCGAGCG
AGGAGTTCGAGCTGTTCTACCAGCCGCTCGTCAATCTGAAATCCGGCAAGATCTCCACCTGCGAGGCGCTGCTGCGCTGG
AACCATCCGGTGCGCGGCACCGTCTCGCCGGTCGACATCATCCCCGTCGCCGAGGACATGGGCCTGATCGTCGATCTCGG
CCGCTGGATCCTGCGCAAGGCCTGCCTGGAGTGCATGAAGTGGCCGGAGGCGGTGAGCGTCGCCGTCAACTTCTCGCCGC
AGCAGTTCCACCAGCGCGACGTGCTGAGCGAGGTGCGCTATGCGCTTGAAGTGTCGGGCCTGCCGCCGCATCGCCTGGAG
ATCGAGATCACAGAATCGTCGCTCCTGCGCAACACGCAGCTGACCCATGACGTGCTGTCGCAATTGCACATGCTCGGCGT
GCGGATCTCGCTCGACGATTTCGGCACCGGCTATTCGAGCCTCAGCTATCTGCACAACTTCCCGCTCGAGAAGGTCAAGA
TCGATCGCTCCTTCCTCGAGGGCATCGACAGCGACCGTCCTCTGACGCTGCTGCGCGGCGTCGCCCGCCTGTCGGCCGAT
CTCGGCATGTCGGTCGTCGTCGAGGGCATCGAGACCAACGAGCAGCTCGAGCTGGTTAGCGTCGACGGCACCGTCACCGA
GGCGCAGGGCTATCTGTTCAGCCGGCCCGTGCCGGCGGTGCGGATCCGCCAGCTGCTCAATGCGTCGCATGGGCGGCGGA
CGATCGATGAACCGTTGGCTGCCATCGGCGGCAGCCGCTCGATCGCCTGA

Upstream 100 bases:

>100_bases
AGTCTGCTGAATTTTCGAGGGAATTCCTGCGCTTTGCGGCGATGGAAACGGTCCGCTAACGATGTTCCCTCAGAAAGACT
TCATCTGCGAACGGTAATGT

Downstream 100 bases:

>100_bases
TTACCGGCTCTGCCTCAGAGTCATGGCTCCGCGACCAGCCATGCAAGACAACCGGACGTCGTACCAGCCGGGGGCAGGAC
GCGCGCATCGCGCGCGAGTT

Product: putative diguanylate cyclase/phosphodiesterase (EAL)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 789; Mature: 789

Protein sequence:

>789_residues
MRTEPNACVRMQLASQTREDEQKLSPSIQAALVDSLFQDPGPMFAGALCAAVAAVMTAMKSGDSNLWPCAVMLIVAGGLR
SLDMRYYRHLCDRGRLTQEAVARWEIRYQIGAMLYALVLGVWCVVAVVDNSDPVVHLIAISVTLCYMSAGAGRTYGRPWI
FHVQILLACGPLAMALALHGSPYYMGMAAFCVLFFMSLKHISTNLQRIFVQAFVAREGEAALAKQFDTALNNMPHGLCMF
GPDGRLAVMNHRFGEMMSLPEDILQRGGKAADIINACVISGAISAPSGRMILSEIEHTKTHNIITSDPDIVRDRSLSWTF
QPMADGGAVVLLEDITERQHAEARISHLARYDELTTLPNRVSFRDEIERLLKIPQRHGELSALLFVDLDRFKQVNDTLGH
PCGDQLLCAVSERLRDMLRPEDFVARFGGDEFVVFQRNIRSNDDAAVLARRIVDQLSERYKIDNHLVEIGASVGIAMTAP
GISADTLLKNADMALYRAKAEGRGTFCFFRDELAQTVEARRILELDLRKALASEEFELFYQPLVNLKSGKISTCEALLRW
NHPVRGTVSPVDIIPVAEDMGLIVDLGRWILRKACLECMKWPEAVSVAVNFSPQQFHQRDVLSEVRYALEVSGLPPHRLE
IEITESSLLRNTQLTHDVLSQLHMLGVRISLDDFGTGYSSLSYLHNFPLEKVKIDRSFLEGIDSDRPLTLLRGVARLSAD
LGMSVVVEGIETNEQLELVSVDGTVTEAQGYLFSRPVPAVRIRQLLNASHGRRTIDEPLAAIGGSRSIA

Sequences:

>Translated_789_residues
MRTEPNACVRMQLASQTREDEQKLSPSIQAALVDSLFQDPGPMFAGALCAAVAAVMTAMKSGDSNLWPCAVMLIVAGGLR
SLDMRYYRHLCDRGRLTQEAVARWEIRYQIGAMLYALVLGVWCVVAVVDNSDPVVHLIAISVTLCYMSAGAGRTYGRPWI
FHVQILLACGPLAMALALHGSPYYMGMAAFCVLFFMSLKHISTNLQRIFVQAFVAREGEAALAKQFDTALNNMPHGLCMF
GPDGRLAVMNHRFGEMMSLPEDILQRGGKAADIINACVISGAISAPSGRMILSEIEHTKTHNIITSDPDIVRDRSLSWTF
QPMADGGAVVLLEDITERQHAEARISHLARYDELTTLPNRVSFRDEIERLLKIPQRHGELSALLFVDLDRFKQVNDTLGH
PCGDQLLCAVSERLRDMLRPEDFVARFGGDEFVVFQRNIRSNDDAAVLARRIVDQLSERYKIDNHLVEIGASVGIAMTAP
GISADTLLKNADMALYRAKAEGRGTFCFFRDELAQTVEARRILELDLRKALASEEFELFYQPLVNLKSGKISTCEALLRW
NHPVRGTVSPVDIIPVAEDMGLIVDLGRWILRKACLECMKWPEAVSVAVNFSPQQFHQRDVLSEVRYALEVSGLPPHRLE
IEITESSLLRNTQLTHDVLSQLHMLGVRISLDDFGTGYSSLSYLHNFPLEKVKIDRSFLEGIDSDRPLTLLRGVARLSAD
LGMSVVVEGIETNEQLELVSVDGTVTEAQGYLFSRPVPAVRIRQLLNASHGRRTIDEPLAAIGGSRSIA
>Mature_789_residues
MRTEPNACVRMQLASQTREDEQKLSPSIQAALVDSLFQDPGPMFAGALCAAVAAVMTAMKSGDSNLWPCAVMLIVAGGLR
SLDMRYYRHLCDRGRLTQEAVARWEIRYQIGAMLYALVLGVWCVVAVVDNSDPVVHLIAISVTLCYMSAGAGRTYGRPWI
FHVQILLACGPLAMALALHGSPYYMGMAAFCVLFFMSLKHISTNLQRIFVQAFVAREGEAALAKQFDTALNNMPHGLCMF
GPDGRLAVMNHRFGEMMSLPEDILQRGGKAADIINACVISGAISAPSGRMILSEIEHTKTHNIITSDPDIVRDRSLSWTF
QPMADGGAVVLLEDITERQHAEARISHLARYDELTTLPNRVSFRDEIERLLKIPQRHGELSALLFVDLDRFKQVNDTLGH
PCGDQLLCAVSERLRDMLRPEDFVARFGGDEFVVFQRNIRSNDDAAVLARRIVDQLSERYKIDNHLVEIGASVGIAMTAP
GISADTLLKNADMALYRAKAEGRGTFCFFRDELAQTVEARRILELDLRKALASEEFELFYQPLVNLKSGKISTCEALLRW
NHPVRGTVSPVDIIPVAEDMGLIVDLGRWILRKACLECMKWPEAVSVAVNFSPQQFHQRDVLSEVRYALEVSGLPPHRLE
IEITESSLLRNTQLTHDVLSQLHMLGVRISLDDFGTGYSSLSYLHNFPLEKVKIDRSFLEGIDSDRPLTLLRGVARLSAD
LGMSVVVEGIETNEQLELVSVDGTVTEAQGYLFSRPVPAVRIRQLLNASHGRRTIDEPLAAIGGSRSIA

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=433, Percent_Identity=36.9515011547344, Blast_Score=276, Evalue=5e-75,
Organism=Escherichia coli, GI87081921, Length=443, Percent_Identity=32.0541760722348, Blast_Score=226, Evalue=4e-60,
Organism=Escherichia coli, GI226510982, Length=427, Percent_Identity=27.1662763466042, Blast_Score=180, Evalue=4e-46,
Organism=Escherichia coli, GI1788502, Length=240, Percent_Identity=36.25, Blast_Score=140, Evalue=3e-34,
Organism=Escherichia coli, GI87081845, Length=245, Percent_Identity=35.1020408163265, Blast_Score=139, Evalue=7e-34,
Organism=Escherichia coli, GI87081980, Length=236, Percent_Identity=36.4406779661017, Blast_Score=133, Evalue=5e-32,
Organism=Escherichia coli, GI1786507, Length=238, Percent_Identity=32.7731092436975, Blast_Score=131, Evalue=2e-31,
Organism=Escherichia coli, GI1787055, Length=262, Percent_Identity=31.2977099236641, Blast_Score=121, Evalue=2e-28,
Organism=Escherichia coli, GI1790496, Length=236, Percent_Identity=28.3898305084746, Blast_Score=120, Evalue=3e-28,
Organism=Escherichia coli, GI1788381, Length=364, Percent_Identity=27.4725274725275, Blast_Score=115, Evalue=2e-26,
Organism=Escherichia coli, GI87081743, Length=236, Percent_Identity=30.0847457627119, Blast_Score=108, Evalue=2e-24,
Organism=Escherichia coli, GI87081881, Length=185, Percent_Identity=35.1351351351351, Blast_Score=96, Evalue=1e-20,
Organism=Escherichia coli, GI1788849, Length=443, Percent_Identity=26.6365688487585, Blast_Score=95, Evalue=2e-20,
Organism=Escherichia coli, GI87081977, Length=156, Percent_Identity=36.5384615384615, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI1786584, Length=175, Percent_Identity=32, Blast_Score=91, Evalue=3e-19,
Organism=Escherichia coli, GI87082096, Length=259, Percent_Identity=26.2548262548263, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI1788956, Length=166, Percent_Identity=33.7349397590361, Blast_Score=86, Evalue=7e-18,
Organism=Escherichia coli, GI145693134, Length=161, Percent_Identity=34.1614906832298, Blast_Score=83, Evalue=5e-17,
Organism=Escherichia coli, GI1787262, Length=163, Percent_Identity=34.9693251533742, Blast_Score=83, Evalue=5e-17,
Organism=Escherichia coli, GI87082007, Length=160, Percent_Identity=34.375, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI1787816, Length=164, Percent_Identity=32.3170731707317, Blast_Score=74, Evalue=4e-14,
Organism=Escherichia coli, GI1788085, Length=164, Percent_Identity=29.2682926829268, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1787056, Length=187, Percent_Identity=29.9465240641711, Blast_Score=69, Evalue=2e-12,
Organism=Escherichia coli, GI1789650, Length=461, Percent_Identity=21.2581344902386, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI87081974, Length=148, Percent_Identity=29.0540540540541, Blast_Score=67, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 87514; Mature: 87514

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTEPNACVRMQLASQTREDEQKLSPSIQAALVDSLFQDPGPMFAGALCAAVAAVMTAMK
CCCCCCHHEEHHHHHHCHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
SGDSNLWPCAVMLIVAGGLRSLDMRYYRHLCDRGRLTQEAVARWEIRYQIGAMLYALVLG
CCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
VWCVVAVVDNSDPVVHLIAISVTLCYMSAGAGRTYGRPWIFHVQILLACGPLAMALALHG
HHHHHHEECCCCCEEHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
SPYYMGMAAFCVLFFMSLKHISTNLQRIFVQAFVAREGEAALAKQFDTALNNMPHGLCMF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEE
GPDGRLAVMNHRFGEMMSLPEDILQRGGKAADIINACVISGAISAPSGRMILSEIEHTKT
CCCCCEEEECCCHHHHHCCHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHC
HNIITSDPDIVRDRSLSWTFQPMADGGAVVLLEDITERQHAEARISHLARYDELTTLPNR
CCCCCCCCCHHHCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCC
VSFRDEIERLLKIPQRHGELSALLFVDLDRFKQVNDTLGHPCGDQLLCAVSERLRDMLRP
CCHHHHHHHHHHCHHHCCCEEEEEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
EDFVARFGGDEFVVFQRNIRSNDDAAVLARRIVDQLSERYKIDNHLVEIGASVGIAMTAP
HHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC
GISADTLLKNADMALYRAKAEGRGTFCFFRDELAQTVEARRILELDLRKALASEEFELFY
CCCHHHHHHCCCHHEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QPLVNLKSGKISTCEALLRWNHPVRGTVSPVDIIPVAEDMGLIVDLGRWILRKACLECMK
HHHHCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHC
WPEAVSVAVNFSPQQFHQRDVLSEVRYALEVSGLPPHRLEIEITESSLLRNTQLTHDVLS
CCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHHH
QLHMLGVRISLDDFGTGYSSLSYLHNFPLEKVKIDRSFLEGIDSDRPLTLLRGVARLSAD
HHHHHHEEEEECCCCCCHHHHHHHHCCCHHHHHHCHHHHCCCCCCCCHHHHHHHHHHHHH
LGMSVVVEGIETNEQLELVSVDGTVTEAQGYLFSRPVPAVRIRQLLNASHGRRTIDEPLA
CCCEEEEECCCCCCCEEEEEECCCEECCCCCEECCCCHHHHHHHHHCCCCCCCCHHHHHH
AIGGSRSIA
HCCCCCCCC
>Mature Secondary Structure
MRTEPNACVRMQLASQTREDEQKLSPSIQAALVDSLFQDPGPMFAGALCAAVAAVMTAMK
CCCCCCHHEEHHHHHHCHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
SGDSNLWPCAVMLIVAGGLRSLDMRYYRHLCDRGRLTQEAVARWEIRYQIGAMLYALVLG
CCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
VWCVVAVVDNSDPVVHLIAISVTLCYMSAGAGRTYGRPWIFHVQILLACGPLAMALALHG
HHHHHHEECCCCCEEHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
SPYYMGMAAFCVLFFMSLKHISTNLQRIFVQAFVAREGEAALAKQFDTALNNMPHGLCMF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEE
GPDGRLAVMNHRFGEMMSLPEDILQRGGKAADIINACVISGAISAPSGRMILSEIEHTKT
CCCCCEEEECCCHHHHHCCHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHC
HNIITSDPDIVRDRSLSWTFQPMADGGAVVLLEDITERQHAEARISHLARYDELTTLPNR
CCCCCCCCCHHHCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCC
VSFRDEIERLLKIPQRHGELSALLFVDLDRFKQVNDTLGHPCGDQLLCAVSERLRDMLRP
CCHHHHHHHHHHCHHHCCCEEEEEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
EDFVARFGGDEFVVFQRNIRSNDDAAVLARRIVDQLSERYKIDNHLVEIGASVGIAMTAP
HHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC
GISADTLLKNADMALYRAKAEGRGTFCFFRDELAQTVEARRILELDLRKALASEEFELFY
CCCHHHHHHCCCHHEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QPLVNLKSGKISTCEALLRWNHPVRGTVSPVDIIPVAEDMGLIVDLGRWILRKACLECMK
HHHHCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHC
WPEAVSVAVNFSPQQFHQRDVLSEVRYALEVSGLPPHRLEIEITESSLLRNTQLTHDVLS
CCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHHH
QLHMLGVRISLDDFGTGYSSLSYLHNFPLEKVKIDRSFLEGIDSDRPLTLLRGVARLSAD
HHHHHHEEEEECCCCCCHHHHHHHHCCCHHHHHHCHHHHCCCCCCCCHHHHHHHHHHHHH
LGMSVVVEGIETNEQLELVSVDGTVTEAQGYLFSRPVPAVRIRQLLNASHGRRTIDEPLA
CCCEEEEECCCCCCCEEEEEECCCEECCCCCEECCCCHHHHHHHHHCCCCCCCCHHHHHH
AIGGSRSIA
HCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]