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The map label for this gene is 146338252

Identifier: 146338252

GI number: 146338252

Start: 1229775

End: 1231046

Strand: Direct

Name: 146338252

Synonym: BRADO1156

Alternate gene names: NA

Gene position: 1229775-1231046 (Clockwise)

Preceding gene: 146338251

Following gene: 146338253

Centisome position: 16.49

GC content: 70.05

Gene sequence:

>1272_bases
ATGACCGACGTTGCCTGGATCGATGCGGCCCTGACATCAGCCCGTCCCCAGGCCGTCGGCGCGCTGCTGCGCTATTTCCG
CGACCTCGATACGGCGGAGGAGGCGTTCCAGAACGCCTGCCTGCGCGCGCTGAAGAGCTGGCCGCAGAACGGGCCGCCGC
GCGATCCCGCGGCGTGGCTGATCATGGTCGGCCGCAATGCCGCGATCGACGATGTCAGGCGCAGCCGGCGCGAGCAGCCG
CTGCCGGAGGATGAAGCGATCTCCGATCTCGGCGATGCCGAGAGCGCCGTCGTCGACCGGCTCGACGGCTCGCATTATCG
CGACGATATCCTGCGGCTGCTGTTCATCTGCTGCCACAAGGAGCTGCCGGCGACGCAACAGATCGCGCTGGCGCTGCGCG
TGGTGTCCGGCCTGACAGTCAAGCAGATCGCCCGCGCCTTTCTCGTCAGCGACGCGGCGATGGAGCAGCGCATCACCCGC
GCCAAGGCGCGCGTCGCGCAGGCGAACGTGCCGTTCGAGACGCCGGGTGCGGTGGAGCGGGCCGAGCGCCTGACGGCCGT
CGCCGCGATGATCTATCTGATCTTCAACGAGGGCTATTCGTCGAGTGGCGAGACCGCCGCGCTGCGCCGGAAGCTGTCGG
AGGAGGCGATCCGGCTGGCGCGGCTGCTGCTGCGGCTGTTTCCAGGCGAGCCGGAGATCATGGGCCTGACGGCGCTGCTG
CTGTTGCAGCACGCGCGCAGTGCGGCCCGCTTCGACGCCGAGGGCCTGCCGATCCTGCTGGAGGATCAGGACCGCACGCT
GTGGAATCAGCCGATGATCGCCGAGGGCCTGGCGCTGATCGACAAGGCCATGCGGCACCGGCGCAGCGGCCCTTATCAGA
TCCAGGCGGCGATCGCGGCGCTGCATGCGCGCGCCGCCAGGCCCGAGGAGACCGACTGGACGCAGATCGACCTGCTCTAT
GGCGCGCTCGAAGTGGTGCAGCCTTCGCCTGTCGTGACGCTCAACCGCGCCGTTGCGGTGTCCAAGGTGCGCGGCGCCCA
GGCCGCGCTCGATCTGATCGCGCCGCTGGAGGGACGCCTTGCCAACTACTTCTACTTCTTCGGCGTGCGCGGCGCGCTGC
TGATGCAACTCGGCCGCCATGATGAGGCGCGGGCGGCGTTCGACCGCGCCATCGCGCTGGCCCACAGTTCGGCCGAGGCG
GCGCATATCCGCATGCAGCTCGACCGGCTGATGCGCGACAGCGCAGCCGCGCCGGCGCAGGCGGGCCGGTGA

Upstream 100 bases:

>100_bases
ACGAGGCGCTCGCGGTGGCGCGCGAGCTTGGCGAGGCCAATCCCGGCGGCTCCTATGAGATCCGTCCGGTCGGCACCTTC
AGGCCGGGCGGGGCGCTGGC

Downstream 100 bases:

>100_bases
GGTCAGGCCGCTACCGGCGCTAAAAGCTTCTGCATCTCTGTCGGCGGCGCCAGACGTCCGGCGTCCTTGGAGCAGCATCA
TGGGGAGGAGTTCGGGATGT

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 423; Mature: 422

Protein sequence:

>423_residues
MTDVAWIDAALTSARPQAVGALLRYFRDLDTAEEAFQNACLRALKSWPQNGPPRDPAAWLIMVGRNAAIDDVRRSRREQP
LPEDEAISDLGDAESAVVDRLDGSHYRDDILRLLFICCHKELPATQQIALALRVVSGLTVKQIARAFLVSDAAMEQRITR
AKARVAQANVPFETPGAVERAERLTAVAAMIYLIFNEGYSSSGETAALRRKLSEEAIRLARLLLRLFPGEPEIMGLTALL
LLQHARSAARFDAEGLPILLEDQDRTLWNQPMIAEGLALIDKAMRHRRSGPYQIQAAIAALHARAARPEETDWTQIDLLY
GALEVVQPSPVVTLNRAVAVSKVRGAQAALDLIAPLEGRLANYFYFFGVRGALLMQLGRHDEARAAFDRAIALAHSSAEA
AHIRMQLDRLMRDSAAAPAQAGR

Sequences:

>Translated_423_residues
MTDVAWIDAALTSARPQAVGALLRYFRDLDTAEEAFQNACLRALKSWPQNGPPRDPAAWLIMVGRNAAIDDVRRSRREQP
LPEDEAISDLGDAESAVVDRLDGSHYRDDILRLLFICCHKELPATQQIALALRVVSGLTVKQIARAFLVSDAAMEQRITR
AKARVAQANVPFETPGAVERAERLTAVAAMIYLIFNEGYSSSGETAALRRKLSEEAIRLARLLLRLFPGEPEIMGLTALL
LLQHARSAARFDAEGLPILLEDQDRTLWNQPMIAEGLALIDKAMRHRRSGPYQIQAAIAALHARAARPEETDWTQIDLLY
GALEVVQPSPVVTLNRAVAVSKVRGAQAALDLIAPLEGRLANYFYFFGVRGALLMQLGRHDEARAAFDRAIALAHSSAEA
AHIRMQLDRLMRDSAAAPAQAGR
>Mature_422_residues
TDVAWIDAALTSARPQAVGALLRYFRDLDTAEEAFQNACLRALKSWPQNGPPRDPAAWLIMVGRNAAIDDVRRSRREQPL
PEDEAISDLGDAESAVVDRLDGSHYRDDILRLLFICCHKELPATQQIALALRVVSGLTVKQIARAFLVSDAAMEQRITRA
KARVAQANVPFETPGAVERAERLTAVAAMIYLIFNEGYSSSGETAALRRKLSEEAIRLARLLLRLFPGEPEIMGLTALLL
LQHARSAARFDAEGLPILLEDQDRTLWNQPMIAEGLALIDKAMRHRRSGPYQIQAAIAALHARAARPEETDWTQIDLLYG
ALEVVQPSPVVTLNRAVAVSKVRGAQAALDLIAPLEGRLANYFYFFGVRGALLMQLGRHDEARAAFDRAIALAHSSAEAA
HIRMQLDRLMRDSAAAPAQAGR

Specific function: Unknown

COG id: COG4941

COG function: function code K; Predicted RNA polymerase sigma factor containing a TPR repeat domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008940
- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 46543; Mature: 46412

Theoretical pI: Translated: 7.26; Mature: 7.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDVAWIDAALTSARPQAVGALLRYFRDLDTAEEAFQNACLRALKSWPQNGPPRDPAAWL
CCCHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEE
IMVGRNAAIDDVRRSRREQPLPEDEAISDLGDAESAVVDRLDGSHYRDDILRLLFICCHK
EEECCCCHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCC
ELPATQQIALALRVVSGLTVKQIARAFLVSDAAMEQRITRAKARVAQANVPFETPGAVER
CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
AERLTAVAAMIYLIFNEGYSSSGETAALRRKLSEEAIRLARLLLRLFPGEPEIMGLTALL
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
LLQHARSAARFDAEGLPILLEDQDRTLWNQPMIAEGLALIDKAMRHRRSGPYQIQAAIAA
HHHHHHHHHHCCCCCCEEEEECCCCCHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
LHARAARPEETDWTQIDLLYGALEVVQPSPVVTLNRAVAVSKVRGAQAALDLIAPLEGRL
HHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
ANYFYFFGVRGALLMQLGRHDEARAAFDRAIALAHSSAEAAHIRMQLDRLMRDSAAAPAQ
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCC
AGR
CCC
>Mature Secondary Structure 
TDVAWIDAALTSARPQAVGALLRYFRDLDTAEEAFQNACLRALKSWPQNGPPRDPAAWL
CCHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEE
IMVGRNAAIDDVRRSRREQPLPEDEAISDLGDAESAVVDRLDGSHYRDDILRLLFICCHK
EEECCCCHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCC
ELPATQQIALALRVVSGLTVKQIARAFLVSDAAMEQRITRAKARVAQANVPFETPGAVER
CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
AERLTAVAAMIYLIFNEGYSSSGETAALRRKLSEEAIRLARLLLRLFPGEPEIMGLTALL
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
LLQHARSAARFDAEGLPILLEDQDRTLWNQPMIAEGLALIDKAMRHRRSGPYQIQAAIAA
HHHHHHHHHHCCCCCCEEEEECCCCCHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
LHARAARPEETDWTQIDLLYGALEVVQPSPVVTLNRAVAVSKVRGAQAALDLIAPLEGRL
HHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
ANYFYFFGVRGALLMQLGRHDEARAAFDRAIALAHSSAEAAHIRMQLDRLMRDSAAAPAQ
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCC
AGR
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430; 7751302 [H]