Click here to switch to the map view.

The map label for this gene is ycfQ [H]

Identifier: 146338248

GI number: 146338248

Start: 1227231

End: 1227902

Strand: Direct

Name: ycfQ [H]

Synonym: BRADO1152

Alternate gene names: 146338248

Gene position: 1227231-1227902 (Clockwise)

Preceding gene: 146338245

Following gene: 146338250

Centisome position: 16.46

GC content: 68.01

Gene sequence:

>672_bases
ATGGTACAAAAAAAGAAGGGGCCGCCGCATGGCGACCTGCCCTCCGAAAAGCCCGCGGTGCCGACCGAGCCGAAGCGGCG
CGGGCGGCCGCGGGCCTATGAGCCGGACCTCGCGCTCGGCAAGGCGCTCGATCTGTTCCGGACGACGGGATTTTCTGCCA
CCTCGCTCGACGATCTCAGCGCGGCCACCGGGATGAACCGGCCGAGCCTCTATGGCGCGTTCGGCGACAAGCGCGAGCTC
TACATCAAGAGCTATCAGCGCTATCGCGACAACGCCCGCGCCTTGATGGGCGAGATCTTCCGCAACGATTGGCCGGTGCG
GCGGCAGCTGGAGCAGATCTTCGCCTCGGCGCTCGATATCTATCTCTCCGGCGATGAAGGGCCGCGCGGCTGCTTCACGG
TAATGACGGCCGGCTCGGAAGCCGTCGCCGATCCCGACATCCGCGCCATGGTGCAGAATGCGCTGACCGAGCTCGACAAG
GCGTTTGCGCATTGCTTCCGGCGCGCCAAGGAGAAGGGCGATCTGCCGGAGCAGGCCGACCCGGCCGTGCTGGCGCAAAT
GGCGTCGGCCACGATCCACTCGATCGCGGTGCGCGCCCGCGCGCGGGTGCCGCGCAAGGCGCTGGAGGCGATCGTCGCCG
GCGCGATCGATGTGATGCTGGGCGGCAGGTGA

Upstream 100 bases:

>100_bases
ACAGGTCCATGGACATCTCCCTGAGGCTCCCGACAGGAGCTTTGATTGATTTTTATACTGTCTCGCATAATATAAAACCG
GTCAAGGAATTTAGTGCGAA

Downstream 100 bases:

>100_bases
CGTCTCAGTATCCTCTCGTGCGATCGACCGTGTTGCGCAGCGTGCCGCCGGCCTCGAAGGTCGCGATCTGCTCGGCGACG
TAGCGCGAGATCGCGTCGGC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MVQKKKGPPHGDLPSEKPAVPTEPKRRGRPRAYEPDLALGKALDLFRTTGFSATSLDDLSAATGMNRPSLYGAFGDKREL
YIKSYQRYRDNARALMGEIFRNDWPVRRQLEQIFASALDIYLSGDEGPRGCFTVMTAGSEAVADPDIRAMVQNALTELDK
AFAHCFRRAKEKGDLPEQADPAVLAQMASATIHSIAVRARARVPRKALEAIVAGAIDVMLGGR

Sequences:

>Translated_223_residues
MVQKKKGPPHGDLPSEKPAVPTEPKRRGRPRAYEPDLALGKALDLFRTTGFSATSLDDLSAATGMNRPSLYGAFGDKREL
YIKSYQRYRDNARALMGEIFRNDWPVRRQLEQIFASALDIYLSGDEGPRGCFTVMTAGSEAVADPDIRAMVQNALTELDK
AFAHCFRRAKEKGDLPEQADPAVLAQMASATIHSIAVRARARVPRKALEAIVAGAIDVMLGGR
>Mature_223_residues
MVQKKKGPPHGDLPSEKPAVPTEPKRRGRPRAYEPDLALGKALDLFRTTGFSATSLDDLSAATGMNRPSLYGAFGDKREL
YIKSYQRYRDNARALMGEIFRNDWPVRRQLEQIFASALDIYLSGDEGPRGCFTVMTAGSEAVADPDIRAMVQNALTELDK
AFAHCFRRAKEKGDLPEQADPAVLAQMASATIHSIAVRARARVPRKALEAIVAGAIDVMLGGR

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=177, Percent_Identity=29.9435028248588, Blast_Score=84, Evalue=6e-18,
Organism=Escherichia coli, GI87082397, Length=107, Percent_Identity=34.5794392523364, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 24443; Mature: 24443

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVQKKKGPPHGDLPSEKPAVPTEPKRRGRPRAYEPDLALGKALDLFRTTGFSATSLDDLS
CCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHH
AATGMNRPSLYGAFGDKRELYIKSYQRYRDNARALMGEIFRNDWPVRRQLEQIFASALDI
HHHCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
YLSGDEGPRGCFTVMTAGSEAVADPDIRAMVQNALTELDKAFAHCFRRAKEKGDLPEQAD
EECCCCCCCCEEEEEECCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PAVLAQMASATIHSIAVRARARVPRKALEAIVAGAIDVMLGGR
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MVQKKKGPPHGDLPSEKPAVPTEPKRRGRPRAYEPDLALGKALDLFRTTGFSATSLDDLS
CCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHH
AATGMNRPSLYGAFGDKRELYIKSYQRYRDNARALMGEIFRNDWPVRRQLEQIFASALDI
HHHCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
YLSGDEGPRGCFTVMTAGSEAVADPDIRAMVQNALTELDKAFAHCFRRAKEKGDLPEQAD
EECCCCCCCCEEEEEECCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PAVLAQMASATIHSIAVRARARVPRKALEAIVAGAIDVMLGGR
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]