| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
Click here to switch to the map view.
The map label for this gene is oppD [C]
Identifier: 146338198
GI number: 146338198
Start: 1166124
End: 1167125
Strand: Direct
Name: oppD [C]
Synonym: BRADO1096
Alternate gene names: 146338198
Gene position: 1166124-1167125 (Clockwise)
Preceding gene: 146338197
Following gene: 146338199
Centisome position: 15.64
GC content: 66.57
Gene sequence:
>1002_bases GTGATGGACGCGCGCGTCGCTCCGCTCCTCGAGATCAAGGGGCTGAAGACCTATTTCAACAGCGACGAGGGCCAGGTTCA GGCCGTCGACGGTGTCGACATCTCGATCGGCCACGGCGAGACCTTGTGCGTGGTCGGCGAGTCCGGCTCGGGCAAGACGG TCACCGCGATGTCGGTGCTGAAGCTGATCGCGATGCCGCCCGGCCGCATCGCCGGCGGCCAGATCCTGTGGAAAGGCCGC GATCTCGTGCCGCTGCCGACCTCCGAGCTCAATCGCATCCGCGCCAGCGAGATCGCGATCGTGTTCCAGGAGCCGATGAC CTCGCTGAACCCGGTCTACACCGTCGGCGATCAGATCGCCGAGGTGATCCGGTTGCATCAGGGCCTGTCGAAGAAGGCGG CGATGGACCGTGCCGCGGAGATGCTGGCACTGGTGCAGATCCCCAATCCGCAGCGCCGCGTGCACGACTATCCGCACCAT TTCTCCGGCGGCATGCGCCAGCGCGTGATGATCGCGATGGCGCTGTCGTGCAATCCCAAGCTCCTGATCGCTGACGAGCC GACCACCGCGCTCGACGTCACGATCCAGGCGCAGATCCTCGACCTGCTGCTGGACATGAAGGAGCGGCTCGGCATGTCGA TCATGCTGATCACCCACGCGATGGGCGTCGTTGCCGAGGTCGCCCAGCGCGTCGTGGTCATGTATGCGGGCCGGGTGGCC GAGGAGGCGCCGGTCGAGCGCCTGTTCGCCAATCCGCGCCATCCGTACACGCAAGGCCTTATCCGTTCGATCCCGCGCAT CGATCTCGCTGCGGTCAAGAAGAGCCGGCTCGAGAGCATCCCGGGCAGCGTGCCGAAGCTGGTCAATCCGCCCGAAGGCT GCCGCTTCGCCTCGCGCTGCCGCTTCGTCATCCCCGACTGCAAGCGTGCGCAGCCTCCGCTGCGCGAGATCGAGCCCGGC CACAAGGTGGCGTGCATTCGCGCCGAAGAGACGCTGCTGTGA
Upstream 100 bases:
>100_bases ATTGGGCGCTGTTCGCCGGCGGCGCGATCTTCCTGACCGTCATCGCGATCAACTTCATCGGTGATGGCCTGCGCGATGCA CTCGATCCGCGGAAGGTGAT
Downstream 100 bases:
>100_bases TGACCGACACTGCCATTGCTCCCGCCGCCGCTTCGGCGCCGCTGCTCACGGTGCGCAACCTGACCAAGGCGTTTCCGATC AAGGGCGGCCTGTTGAAGCG
Product: oligopeptide ABC transporter ATP-binding protein
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 333; Mature: 333
Protein sequence:
>333_residues MMDARVAPLLEIKGLKTYFNSDEGQVQAVDGVDISIGHGETLCVVGESGSGKTVTAMSVLKLIAMPPGRIAGGQILWKGR DLVPLPTSELNRIRASEIAIVFQEPMTSLNPVYTVGDQIAEVIRLHQGLSKKAAMDRAAEMLALVQIPNPQRRVHDYPHH FSGGMRQRVMIAMALSCNPKLLIADEPTTALDVTIQAQILDLLLDMKERLGMSIMLITHAMGVVAEVAQRVVVMYAGRVA EEAPVERLFANPRHPYTQGLIRSIPRIDLAAVKKSRLESIPGSVPKLVNPPEGCRFASRCRFVIPDCKRAQPPLREIEPG HKVACIRAEETLL
Sequences:
>Translated_333_residues MMDARVAPLLEIKGLKTYFNSDEGQVQAVDGVDISIGHGETLCVVGESGSGKTVTAMSVLKLIAMPPGRIAGGQILWKGR DLVPLPTSELNRIRASEIAIVFQEPMTSLNPVYTVGDQIAEVIRLHQGLSKKAAMDRAAEMLALVQIPNPQRRVHDYPHH FSGGMRQRVMIAMALSCNPKLLIADEPTTALDVTIQAQILDLLLDMKERLGMSIMLITHAMGVVAEVAQRVVVMYAGRVA EEAPVERLFANPRHPYTQGLIRSIPRIDLAAVKKSRLESIPGSVPKLVNPPEGCRFASRCRFVIPDCKRAQPPLREIEPG HKVACIRAEETLL >Mature_333_residues MMDARVAPLLEIKGLKTYFNSDEGQVQAVDGVDISIGHGETLCVVGESGSGKTVTAMSVLKLIAMPPGRIAGGQILWKGR DLVPLPTSELNRIRASEIAIVFQEPMTSLNPVYTVGDQIAEVIRLHQGLSKKAAMDRAAEMLALVQIPNPQRRVHDYPHH FSGGMRQRVMIAMALSCNPKLLIADEPTTALDVTIQAQILDLLLDMKERLGMSIMLITHAMGVVAEVAQRVVVMYAGRVA EEAPVERLFANPRHPYTQGLIRSIPRIDLAAVKKSRLESIPGSVPKLVNPPEGCRFASRCRFVIPDCKRAQPPLREIEPG HKVACIRAEETLL
Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for energy coupling to the transport system [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI148612844, Length=226, Percent_Identity=32.3008849557522, Blast_Score=77, Evalue=3e-14, Organism=Homo sapiens, GI255708477, Length=226, Percent_Identity=32.3008849557522, Blast_Score=76, Evalue=4e-14, Organism=Homo sapiens, GI9665248, Length=234, Percent_Identity=30.3418803418803, Blast_Score=75, Evalue=8e-14, Organism=Homo sapiens, GI105990541, Length=217, Percent_Identity=27.1889400921659, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI21536376, Length=217, Percent_Identity=29.9539170506912, Blast_Score=74, Evalue=3e-13, Organism=Homo sapiens, GI171184400, Length=241, Percent_Identity=29.8755186721992, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI42741659, Length=211, Percent_Identity=29.8578199052133, Blast_Score=72, Evalue=9e-13, Organism=Homo sapiens, GI116734710, Length=232, Percent_Identity=26.7241379310345, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI9961252, Length=227, Percent_Identity=29.9559471365639, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI4505771, Length=227, Percent_Identity=29.9559471365639, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI9961250, Length=211, Percent_Identity=30.3317535545024, Blast_Score=69, Evalue=9e-12, Organism=Homo sapiens, GI156105685, Length=222, Percent_Identity=31.0810810810811, Blast_Score=68, Evalue=1e-11, Organism=Escherichia coli, GI48994883, Length=325, Percent_Identity=48, Blast_Score=306, Evalue=9e-85, Organism=Escherichia coli, GI1789963, Length=317, Percent_Identity=45.7413249211356, Blast_Score=297, Evalue=7e-82, Organism=Escherichia coli, GI145693107, Length=264, Percent_Identity=50, Blast_Score=262, Evalue=2e-71, Organism=Escherichia coli, GI1787759, Length=301, Percent_Identity=42.8571428571429, Blast_Score=247, Evalue=1e-66, Organism=Escherichia coli, GI1788506, Length=260, Percent_Identity=47.3076923076923, Blast_Score=235, Evalue=4e-63, Organism=Escherichia coli, GI1789962, Length=329, Percent_Identity=38.9057750759878, Blast_Score=233, Evalue=2e-62, Organism=Escherichia coli, GI1787500, Length=332, Percent_Identity=38.5542168674699, Blast_Score=231, Evalue=5e-62, Organism=Escherichia coli, GI1787548, Length=307, Percent_Identity=35.5048859934853, Blast_Score=197, Evalue=9e-52, Organism=Escherichia coli, GI1787758, Length=316, Percent_Identity=34.4936708860759, Blast_Score=171, Evalue=8e-44, Organism=Escherichia coli, GI1789890, Length=236, Percent_Identity=38.135593220339, Blast_Score=147, Evalue=7e-37, Organism=Escherichia coli, GI48994997, Length=259, Percent_Identity=35.1351351351351, Blast_Score=146, Evalue=2e-36, Organism=Escherichia coli, GI1786398, Length=274, Percent_Identity=33.5766423357664, Blast_Score=139, Evalue=2e-34, Organism=Escherichia coli, GI1787547, Length=262, Percent_Identity=29.7709923664122, Blast_Score=124, Evalue=1e-29, Organism=Escherichia coli, GI1789891, Length=242, Percent_Identity=33.4710743801653, Blast_Score=122, Evalue=3e-29, Organism=Escherichia coli, GI1787029, Length=256, Percent_Identity=30.859375, Blast_Score=117, Evalue=1e-27, Organism=Escherichia coli, GI1789032, Length=237, Percent_Identity=31.6455696202532, Blast_Score=115, Evalue=4e-27, Organism=Escherichia coli, GI1788225, Length=256, Percent_Identity=31.640625, Blast_Score=114, Evalue=1e-26, Organism=Escherichia coli, GI87081791, Length=285, Percent_Identity=31.2280701754386, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI1787370, Length=271, Percent_Identity=28.7822878228782, Blast_Score=112, Evalue=4e-26, Organism=Escherichia coli, GI1787712, Length=245, Percent_Identity=33.469387755102, Blast_Score=111, Evalue=6e-26, Organism=Escherichia coli, GI1789672, Length=245, Percent_Identity=31.0204081632653, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI1787089, Length=237, Percent_Identity=32.9113924050633, Blast_Score=107, Evalue=9e-25, Organism=Escherichia coli, GI1790162, Length=253, Percent_Identity=26.0869565217391, Blast_Score=105, Evalue=6e-24, Organism=Escherichia coli, GI1787105, Length=239, Percent_Identity=30.1255230125523, Blast_Score=102, Evalue=4e-23, Organism=Escherichia coli, GI1788644, Length=180, Percent_Identity=35, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1788450, Length=235, Percent_Identity=28.936170212766, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI87081834, Length=235, Percent_Identity=31.063829787234, Blast_Score=95, Evalue=6e-21, Organism=Escherichia coli, GI1788761, Length=246, Percent_Identity=29.6747967479675, Blast_Score=94, Evalue=2e-20, Organism=Escherichia coli, GI1786703, Length=239, Percent_Identity=30.1255230125523, Blast_Score=94, Evalue=2e-20, Organism=Escherichia coli, GI1786563, Length=237, Percent_Identity=32.0675105485232, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1786872, Length=221, Percent_Identity=29.8642533936652, Blast_Score=92, Evalue=5e-20, Organism=Escherichia coli, GI87081709, Length=244, Percent_Identity=25.8196721311475, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1786319, Length=242, Percent_Identity=28.5123966942149, Blast_Score=86, Evalue=4e-18, Organism=Escherichia coli, GI1790467, Length=250, Percent_Identity=27.2, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI48995001, Length=234, Percent_Identity=29.4871794871795, Blast_Score=82, Evalue=7e-17, Organism=Escherichia coli, GI1789873, Length=216, Percent_Identity=29.6296296296296, Blast_Score=78, Evalue=1e-15, Organism=Escherichia coli, GI1789991, Length=240, Percent_Identity=31.25, Blast_Score=78, Evalue=1e-15, Organism=Escherichia coli, GI87082267, Length=264, Percent_Identity=28.030303030303, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1787792, Length=220, Percent_Identity=26.3636363636364, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1789864, Length=259, Percent_Identity=26.6409266409266, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1786253, Length=220, Percent_Identity=27.7272727272727, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1790534, Length=201, Percent_Identity=29.3532338308458, Blast_Score=69, Evalue=5e-13, Organism=Escherichia coli, GI87082268, Length=248, Percent_Identity=27.0161290322581, Blast_Score=69, Evalue=6e-13, Organism=Escherichia coli, GI1787164, Length=219, Percent_Identity=28.7671232876712, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI1790190, Length=246, Percent_Identity=28.4552845528455, Blast_Score=66, Evalue=4e-12, Organism=Escherichia coli, GI1786345, Length=218, Percent_Identity=28.4403669724771, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1786803, Length=224, Percent_Identity=24.5535714285714, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1790525, Length=226, Percent_Identity=25.6637168141593, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1787112, Length=265, Percent_Identity=24.1509433962264, Blast_Score=61, Evalue=8e-11, Organism=Escherichia coli, GI1789593, Length=221, Percent_Identity=26.2443438914027, Blast_Score=61, Evalue=9e-11, Organism=Caenorhabditis elegans, GI193209708, Length=232, Percent_Identity=26.7241379310345, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17543740, Length=240, Percent_Identity=30.4166666666667, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI193211015, Length=227, Percent_Identity=26.8722466960352, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI71996809, Length=227, Percent_Identity=26.8722466960352, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI193211017, Length=227, Percent_Identity=26.8722466960352, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI193202349, Length=227, Percent_Identity=27.3127753303965, Blast_Score=72, Evalue=5e-13, Organism=Caenorhabditis elegans, GI212646699, Length=227, Percent_Identity=29.9559471365639, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI193208177, Length=217, Percent_Identity=30.8755760368664, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17541710, Length=242, Percent_Identity=31.8181818181818, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI25146777, Length=231, Percent_Identity=26.4069264069264, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI71992290, Length=225, Percent_Identity=31.5555555555556, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17567265, Length=231, Percent_Identity=26.4069264069264, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17565938, Length=239, Percent_Identity=29.2887029288703, Blast_Score=68, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17569143, Length=235, Percent_Identity=27.6595744680851, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17558664, Length=247, Percent_Identity=29.5546558704453, Blast_Score=66, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=240, Percent_Identity=29.1666666666667, Blast_Score=78, Evalue=2e-15, Organism=Saccharomyces cerevisiae, GI6323217, Length=232, Percent_Identity=29.3103448275862, Blast_Score=67, Evalue=5e-12, Organism=Drosophila melanogaster, GI17136662, Length=225, Percent_Identity=30.2222222222222, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI28574150, Length=221, Percent_Identity=22.1719457013575, Blast_Score=70, Evalue=3e-12, Organism=Drosophila melanogaster, GI116007328, Length=221, Percent_Identity=22.1719457013575, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI85726357, Length=238, Percent_Identity=27.3109243697479, Blast_Score=69, Evalue=6e-12, Organism=Drosophila melanogaster, GI281363262, Length=228, Percent_Identity=27.6315789473684, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24653245, Length=228, Percent_Identity=27.6315789473684, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI221512771, Length=228, Percent_Identity=24.1228070175439, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24643674, Length=239, Percent_Identity=25.1046025104602, Blast_Score=66, Evalue=4e-11, Organism=Drosophila melanogaster, GI85725262, Length=230, Percent_Identity=28.695652173913, Blast_Score=65, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 36451; Mature: 36451
Theoretical pI: Translated: 8.60; Mature: 8.60
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 6.3 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 6.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMDARVAPLLEIKGLKTYFNSDEGQVQAVDGVDISIGHGETLCVVGESGSGKTVTAMSVL CCCCCCCCHHHHCCHHHHHCCCCCCEEEECCEEEEECCCCEEEEEECCCCCCCHHHHHHH KLIAMPPGRIAGGQILWKGRDLVPLPTSELNRIRASEIAIVFQEPMTSLNPVYTVGDQIA HHHHCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHEEEEEECCCCCCCCHHHHHHHHH EVIRLHQGLSKKAAMDRAAEMLALVQIPNPQRRVHDYPHHFSGGMRQRVMIAMALSCNPK HHHHHHHCCCHHHHHHHHHHHHHHEECCCCHHHHCCCCCHHCCCHHHHEEEEEEECCCCE LLIADEPTTALDVTIQAQILDLLLDMKERLGMSIMLITHAMGVVAEVAQRVVVMYAGRVA EEEECCCCCEEEEEHHHHHHHHHHHHHHHHCCEEHHHHHHHHHHHHHHHHHHHHHHHHHH EEAPVERLFANPRHPYTQGLIRSIPRIDLAAVKKSRLESIPGSVPKLVNPPEGCRFASRC HHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCC RFVIPDCKRAQPPLREIEPGHKVACIRAEETLL CEECCCCCCCCCCHHHCCCCCCEEEEECCCCCC >Mature Secondary Structure MMDARVAPLLEIKGLKTYFNSDEGQVQAVDGVDISIGHGETLCVVGESGSGKTVTAMSVL CCCCCCCCHHHHCCHHHHHCCCCCCEEEECCEEEEECCCCEEEEEECCCCCCCHHHHHHH KLIAMPPGRIAGGQILWKGRDLVPLPTSELNRIRASEIAIVFQEPMTSLNPVYTVGDQIA HHHHCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHEEEEEECCCCCCCCHHHHHHHHH EVIRLHQGLSKKAAMDRAAEMLALVQIPNPQRRVHDYPHHFSGGMRQRVMIAMALSCNPK HHHHHHHCCCHHHHHHHHHHHHHHEECCCCHHHHCCCCCHHCCCHHHHEEEEEEECCCCE LLIADEPTTALDVTIQAQILDLLLDMKERLGMSIMLITHAMGVVAEVAQRVVVMYAGRVA EEEECCCCCEEEEEHHHHHHHHHHHHHHHHCCEEHHHHHHHHHHHHHHHHHHHHHHHHHH EEAPVERLFANPRHPYTQGLIRSIPRIDLAAVKKSRLESIPGSVPKLVNPPEGCRFASRC HHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCC RFVIPDCKRAQPPLREIEPGHKVACIRAEETLL CEECCCCCCCCCCHHHCCCCCCEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA