| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is 146338181
Identifier: 146338181
GI number: 146338181
Start: 1145828
End: 1147204
Strand: Reverse
Name: 146338181
Synonym: BRADO1079
Alternate gene names: NA
Gene position: 1147204-1145828 (Counterclockwise)
Preceding gene: 146338182
Following gene: 146338180
Centisome position: 15.39
GC content: 67.03
Gene sequence:
>1377_bases GTGGCCGTGATGGACACCCGCAACGACCCCGTTTCCCCAGGCCTTCTCGCCCGGCTGAAGACACGGCTTGCCGCGCTTGG CGGCAGCGGCGAGGCCTCGCTGACGCGGCGGCTGGCCGGCACCATCTTCCTCATCCGCGTGCTGAGCGCCGGCCTGGCCT ATCTCAGCCAGATCCTGCTGGCGCGCTGGATGGGTGGCTCGGACTACGGCACCTACGTCTATGTCTGGACCTGGGTGCTG CTGCTCGGCAGCATGCTCGATTTTGGCATCGCCTCGTCGGCGCAGAAGATCATCCCGGATTACCGCGCGGCGAACCAGCA CGCGCTGCTGCGCGGCTTCCTGTCCGGCGGCCGCTGGCTCACGCTCGCCACGTCCGGCTGTGCGGCGCTGCTGCTGGCCG GTCTCCTCGCCCTGCTGTCGCCGTGGATCGACGACAGCGAGCGCCTGCCACTGTACATCGGCTGTCTCACCCTGCCGGCC TTCGTGGTCGCCAACACCCAGGACGGCATCGCGCGCTCGCATGACTGGATGGCGCTCGGCCTGATGCCGCAATTCATCAT CCGGCAGACGCTGATCATCGGCTTCACCGCAGGCGCCTTCGTGCTCGGCTTCGATCTCGGCGCGACCGCGGCGATGGCCG CGAGCGCCGCCGCCGTCTGGATCGCGATGCTCGGCCAGATGCTGGTGCTGAACAATCGGCTCGATCGCCATGTCGAGAGT GGACCGAAGCAGTATGACCTCAGAGGCTGGCTCGCGATCTCGCTGCCGATCCTGCTGGTCGAGAGCTTCTATCTCCTGCT GTCCTACACCGACGTGCTGGTGCTGCAGCAGTTCCGCTCATCGGAGGAGGTCGGCATCTATTTCGCGGTCGTGAAGACGC TCGCGCTGGTGTCGTTCATCCATTACGCGATGTCGGCGACCACGGCGCATCGCTTCGCCGAGTATCACGCGCTCGGCGAC AAGGCGCGGCTGTCGGCCTATGTCGCGCATGCGATCAAATGGACGTTCTGGCCGTCGCTGGCCGCGACCCTGGTGCTGCT CGCGCTGGGCAAGCCGCTGCTATGGCTGTTCGGCGCGCAGTTCACGGCCGGATATGACATCATGTTCATCGCCGCGGTCG GGCTCGTGGTCCGCGCGGCCATCGGTCCGGTGGAGCGGCTTCTCAACATGCTGGGCCAGCAGCGCGCCTGTGCTTCCGCT TACGCGGCGGCGTTCGTCTTGAACCTCGTGCTCTGCATCCTGCTGGTGCCGCGCCTCGGCGGACACGGCGCCGCGGCCGC AACCTCGCTATCGCTGGCGTTCGAGACCGTGCTTCTGTTCCGCATCGTCAAGCAGCGGCTGGGCTTGCACGTTCTCGCCT TCGGCAAGGCGTCCTGA
Upstream 100 bases:
>100_bases CGCGCCTTCGGCGAGCCGGGGCTGGCGATCCAACCGATTCTTAACGATGCGTTGATAGGAAGCCCCATCGCCGCCAGCGC GCGGCCGTGGAGCCCGTGCC
Downstream 100 bases:
>100_bases GGGAACCACGGTGACGTAACAGTTGCGTCATCTTGTCCTCCGCTTGACGGAACTAAGAGCGTCGCCCCGGCAAGGATTGC CGTGCGCGACGATCACGCAA
Product: PST family polysaccharide export protein
Products: NA
Alternate protein names: Polysaccharide Biosynthesis Associated Protein; Polysaccharide Export Related Protein; Polysaccharide Efflux Transporter; MatE Family; Exopolysaccharide Biosynthesis Protein; Lipopolysaccharide Biosynthesis Protein; Virulence Factor MVIN Family Protein; PST Family Polysaccharide Export Protein; Polysaccharide Biosynthesis Related Protein
Number of amino acids: Translated: 458; Mature: 457
Protein sequence:
>458_residues MAVMDTRNDPVSPGLLARLKTRLAALGGSGEASLTRRLAGTIFLIRVLSAGLAYLSQILLARWMGGSDYGTYVYVWTWVL LLGSMLDFGIASSAQKIIPDYRAANQHALLRGFLSGGRWLTLATSGCAALLLAGLLALLSPWIDDSERLPLYIGCLTLPA FVVANTQDGIARSHDWMALGLMPQFIIRQTLIIGFTAGAFVLGFDLGATAAMAASAAAVWIAMLGQMLVLNNRLDRHVES GPKQYDLRGWLAISLPILLVESFYLLLSYTDVLVLQQFRSSEEVGIYFAVVKTLALVSFIHYAMSATTAHRFAEYHALGD KARLSAYVAHAIKWTFWPSLAATLVLLALGKPLLWLFGAQFTAGYDIMFIAAVGLVVRAAIGPVERLLNMLGQQRACASA YAAAFVLNLVLCILLVPRLGGHGAAAATSLSLAFETVLLFRIVKQRLGLHVLAFGKAS
Sequences:
>Translated_458_residues MAVMDTRNDPVSPGLLARLKTRLAALGGSGEASLTRRLAGTIFLIRVLSAGLAYLSQILLARWMGGSDYGTYVYVWTWVL LLGSMLDFGIASSAQKIIPDYRAANQHALLRGFLSGGRWLTLATSGCAALLLAGLLALLSPWIDDSERLPLYIGCLTLPA FVVANTQDGIARSHDWMALGLMPQFIIRQTLIIGFTAGAFVLGFDLGATAAMAASAAAVWIAMLGQMLVLNNRLDRHVES GPKQYDLRGWLAISLPILLVESFYLLLSYTDVLVLQQFRSSEEVGIYFAVVKTLALVSFIHYAMSATTAHRFAEYHALGD KARLSAYVAHAIKWTFWPSLAATLVLLALGKPLLWLFGAQFTAGYDIMFIAAVGLVVRAAIGPVERLLNMLGQQRACASA YAAAFVLNLVLCILLVPRLGGHGAAAATSLSLAFETVLLFRIVKQRLGLHVLAFGKAS >Mature_457_residues AVMDTRNDPVSPGLLARLKTRLAALGGSGEASLTRRLAGTIFLIRVLSAGLAYLSQILLARWMGGSDYGTYVYVWTWVLL LGSMLDFGIASSAQKIIPDYRAANQHALLRGFLSGGRWLTLATSGCAALLLAGLLALLSPWIDDSERLPLYIGCLTLPAF VVANTQDGIARSHDWMALGLMPQFIIRQTLIIGFTAGAFVLGFDLGATAAMAASAAAVWIAMLGQMLVLNNRLDRHVESG PKQYDLRGWLAISLPILLVESFYLLLSYTDVLVLQQFRSSEEVGIYFAVVKTLALVSFIHYAMSATTAHRFAEYHALGDK ARLSAYVAHAIKWTFWPSLAATLVLLALGKPLLWLFGAQFTAGYDIMFIAAVGLVVRAAIGPVERLLNMLGQQRACASAY AAAFVLNLVLCILLVPRLGGHGAAAATSLSLAFETVLLFRIVKQRLGLHVLAFGKAS
Specific function: Unknown
COG id: COG2244
COG function: function code R; Membrane protein involved in the export of O-antigen and teichoic acid
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49391; Mature: 49260
Theoretical pI: Translated: 9.74; Mature: 9.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVMDTRNDPVSPGLLARLKTRLAALGGSGEASLTRRLAGTIFLIRVLSAGLAYLSQILL CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ARWMGGSDYGTYVYVWTWVLLLGSMLDFGIASSAQKIIPDYRAANQHALLRGFLSGGRWL HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHCCCHHHHHHHHHCCCCEE TLATSGCAALLLAGLLALLSPWIDDSERLPLYIGCLTLPAFVVANTQDGIARSHDWMALG EEECCCHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHEECCCCCCCCCCCCEEEH LMPQFIIRQTLIIGFTAGAFVLGFDLGATAAMAASAAAVWIAMLGQMLVLNNRLDRHVES HHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GPKQYDLRGWLAISLPILLVESFYLLLSYTDVLVLQQFRSSEEVGIYFAVVKTLALVSFI CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH HYAMSATTAHRFAEYHALGDKARLSAYVAHAIKWTFWPSLAATLVLLALGKPLLWLFGAQ HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCH FTAGYDIMFIAAVGLVVRAAIGPVERLLNMLGQQRACASAYAAAFVLNLVLCILLVPRLG HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC GHGAAAATSLSLAFETVLLFRIVKQRLGLHVLAFGKAS CCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCC >Mature Secondary Structure AVMDTRNDPVSPGLLARLKTRLAALGGSGEASLTRRLAGTIFLIRVLSAGLAYLSQILL CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ARWMGGSDYGTYVYVWTWVLLLGSMLDFGIASSAQKIIPDYRAANQHALLRGFLSGGRWL HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHCCCHHHHHHHHHCCCCEE TLATSGCAALLLAGLLALLSPWIDDSERLPLYIGCLTLPAFVVANTQDGIARSHDWMALG EEECCCHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHEECCCCCCCCCCCCEEEH LMPQFIIRQTLIIGFTAGAFVLGFDLGATAAMAASAAAVWIAMLGQMLVLNNRLDRHVES HHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GPKQYDLRGWLAISLPILLVESFYLLLSYTDVLVLQQFRSSEEVGIYFAVVKTLALVSFI CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH HYAMSATTAHRFAEYHALGDKARLSAYVAHAIKWTFWPSLAATLVLLALGKPLLWLFGAQ HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCH FTAGYDIMFIAAVGLVVRAAIGPVERLLNMLGQQRACASAYAAAFVLNLVLCILLVPRLG HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC GHGAAAATSLSLAFETVLLFRIVKQRLGLHVLAFGKAS CCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA