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The map label for this gene is ybiS [H]

Identifier: 146338158

GI number: 146338158

Start: 1119943

End: 1120605

Strand: Direct

Name: ybiS [H]

Synonym: BRADO1055

Alternate gene names: 146338158

Gene position: 1119943-1120605 (Clockwise)

Preceding gene: 146338154

Following gene: 146338159

Centisome position: 15.02

GC content: 68.33

Gene sequence:

>663_bases
GTGCTGGGCCTCACTTCGGCTCGCGCGCAGAGCCTGGGCTACGCGCCGGTGGAGCAGCAGGCGTTTCCTCCGGATGAGAC
GACGGCGCCCCTCACCGGACAGGACGAGGACAGTCAGCTGCCGGATCGGCTGCGCCGCACGATCGTCAACCTCGATACGC
GCGAGGCGCCGGGCACCATCATCATCGATACCGGAAACACCTATCTGTACTACGTGCTCGGCGGCGGCCGCGCGCTGCGC
TACGGCGTGGGCGTCGGGCGCGAGGGTTTCACCTGGTCGGGCGTGCAAAGCGTAACGCGCAAGGCGGAATGGCCCGACTG
GCATCCGCCGGCGCAGATGATCGCGCGCCAGCCCTATCTTCCGCGCTTCATGGCCGGCGGCCCGGGCAATCCGCTCGGTG
CCCGCGCGATGTATCTCGGCTCCAGCGAATACCGCATTCACGGCACCAATGATCCGACCACGATCGGCAAGTTCGTCTCG
TCCGGTTGCATTCGCCTGACCAACGAGGACGTGTCCGACTTGTTCAGCCGCGTGCAGGTCGGGACGAAGGTCGTGGTGCT
GCCGAAATCCGCGTCCGTGCAGGCGCGCGCCGCCGCCTCGCGCGTGACATCGCTGCCGTCGGGCCGGCAGGCGATGTCGC
TGCCGGTCGCGGCCGTCTACTAA

Upstream 100 bases:

>100_bases
GGCGATGCTCATTCGACAGGGGCACCTCATGACAAGGCTTGTTTCCCGCCAGCGCTGCCTGCAGCGCACGGCATCGATGA
TCGCGATTGCTGCCGCGCTC

Downstream 100 bases:

>100_bases
GCTTGGAGTGATATCATGACCAGCCGACGGGCCCTCACAGCCATCGCCGTGGCGACCATCACTGCCGCCGGCGCCCTGGG
CGGGCCAAGCGGCGCCCGTG

Product: putative ErfK/YbiS/YcfS/YnhG

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MLGLTSARAQSLGYAPVEQQAFPPDETTAPLTGQDEDSQLPDRLRRTIVNLDTREAPGTIIIDTGNTYLYYVLGGGRALR
YGVGVGREGFTWSGVQSVTRKAEWPDWHPPAQMIARQPYLPRFMAGGPGNPLGARAMYLGSSEYRIHGTNDPTTIGKFVS
SGCIRLTNEDVSDLFSRVQVGTKVVVLPKSASVQARAAASRVTSLPSGRQAMSLPVAAVY

Sequences:

>Translated_220_residues
MLGLTSARAQSLGYAPVEQQAFPPDETTAPLTGQDEDSQLPDRLRRTIVNLDTREAPGTIIIDTGNTYLYYVLGGGRALR
YGVGVGREGFTWSGVQSVTRKAEWPDWHPPAQMIARQPYLPRFMAGGPGNPLGARAMYLGSSEYRIHGTNDPTTIGKFVS
SGCIRLTNEDVSDLFSRVQVGTKVVVLPKSASVQARAAASRVTSLPSGRQAMSLPVAAVY
>Mature_220_residues
MLGLTSARAQSLGYAPVEQQAFPPDETTAPLTGQDEDSQLPDRLRRTIVNLDTREAPGTIIIDTGNTYLYYVLGGGRALR
YGVGVGREGFTWSGVQSVTRKAEWPDWHPPAQMIARQPYLPRFMAGGPGNPLGARAMYLGSSEYRIHGTNDPTTIGKFVS
SGCIRLTNEDVSDLFSRVQVGTKVVVLPKSASVQARAAASRVTSLPSGRQAMSLPVAAVY

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787040, Length=152, Percent_Identity=36.8421052631579, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1788299, Length=157, Percent_Identity=36.3057324840764, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1787968, Length=136, Percent_Identity=38.2352941176471, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1787356, Length=156, Percent_Identity=35.2564102564103, Blast_Score=80, Evalue=1e-16,

Paralogues:

None

Copy number: 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 160 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 23684; Mature: 23684

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGLTSARAQSLGYAPVEQQAFPPDETTAPLTGQDEDSQLPDRLRRTIVNLDTREAPGTI
CCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEE
IIDTGNTYLYYVLGGGRALRYGVGVGREGFTWSGVQSVTRKAEWPDWHPPAQMIARQPYL
EEECCCEEEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHCCCCC
PRFMAGGPGNPLGARAMYLGSSEYRIHGTNDPTTIGKFVSSGCIRLTNEDVSDLFSRVQV
CHHHCCCCCCCCCCEEEEECCCCEEEECCCCCHHHHHHHHCCEEEECCCCHHHHHHHHHC
GTKVVVLPKSASVQARAAASRVTSLPSGRQAMSLPVAAVY
CCEEEEECCCCCCHHHHHHHHHHCCCCCCHHHCCCEEECC
>Mature Secondary Structure
MLGLTSARAQSLGYAPVEQQAFPPDETTAPLTGQDEDSQLPDRLRRTIVNLDTREAPGTI
CCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEE
IIDTGNTYLYYVLGGGRALRYGVGVGREGFTWSGVQSVTRKAEWPDWHPPAQMIARQPYL
EEECCCEEEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHCCCCC
PRFMAGGPGNPLGARAMYLGSSEYRIHGTNDPTTIGKFVSSGCIRLTNEDVSDLFSRVQV
CHHHCCCCCCCCCCEEEEECCCCEEEECCCCCHHHHHHHHCCEEEECCCCHHHHHHHHHC
GTKVVVLPKSASVQARAAASRVTSLPSGRQAMSLPVAAVY
CCEEEEECCCCCCHHHHHHHHHHCCCCCCHHHCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]