| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is livF [H]
Identifier: 146338073
GI number: 146338073
Start: 1026902
End: 1027627
Strand: Reverse
Name: livF [H]
Synonym: BRADO0969
Alternate gene names: 146338073
Gene position: 1027627-1026902 (Counterclockwise)
Preceding gene: 146338074
Following gene: 146338065
Centisome position: 13.78
GC content: 66.53
Gene sequence:
>726_bases ATGAGCACCCTGCTGGAAGTCACCGACGCTCACGTCTCCTACGGCAAGGTCGAGGCGGTCCGCTCGGTCTCGCTCACCGT GGTGGAGAACGAGATCGTCACCATCATCGGCGCCAACGGCGCCGGCAAGACAACTCTGCTCAGCGCCATCATGGGCGTGT TCCCGCTCAAGGGCCGCGTCTCCTTCCTGGGCGAGGACCTGGCCCGCTACGAGATCGAGGACCGCGTCGCGCGCGGCCTC TGCCTGGTGCCGGAGCATCGCGAGCTGTTCGCGACCATGAACGTCGAGGACAATCTGCAGCTTGGGGCCTTCAGAATGTC GAAAGCGCATGCGGCGCGCGGCTTCGAGCACGTCTACACGCTGTTCCCTAAGCTGAAGGAGCGGCGCAAGCAGCTCGCCG GCACGCTGTCCGGCGGCGAGCAGCAGATGCTGGCGATGGGCCGCGCGCTGATGGGCTCGCCGAAGATGCTGATGCTCGAC GAGCCCAGCCTCGGCCTCGCTCCGATCATCGTCGCCGGCATCTTCGAGATCGTCGCCAAGCTGCGCGAGGAAGGCGTCTC GGTGCTGCTGGTCGAACAGAACGCCAAGGCCGCGCTCAAGGTCGCCGACCGCGCCTATGTCATGGAGCTCGGCGAGTTCG TGCTGAGCGGCAAAGCCTCGGAAATCGCGACCGACCAGCGCGTCGCGGCGAGCTATCTCGGCTTTGCCGAGACGGCGGCG AGCTGA
Upstream 100 bases:
>100_bases GCATCGTGGTGCTCGATTTCGGCACCAAGATCGCCGAGGGCACACCAGCCGCGATCAAGACCAATCCCGAGGTGATCAAG GCGTATCTCGGAGCCGCCGC
Downstream 100 bases:
>100_bases GCCGGACAGCTGGATGGGACGGCGCCGTCTCAGGATGGTGCCTCCTTCGACAGCAGGAAGTCGACCATCACACGCTCCAG CGCCCGGTACATGTCGATGC
Product: putative branched-chain amino acid ABC transporter ATP-binding protein
Products: ADP; phosphate; L-leucine [Cytoplasm]; ADP; L-valine [Cytoplasm]; L-iso-leucine [Cytoplasm] [C]
Alternate protein names: LIV-I protein F [H]
Number of amino acids: Translated: 241; Mature: 240
Protein sequence:
>241_residues MSTLLEVTDAHVSYGKVEAVRSVSLTVVENEIVTIIGANGAGKTTLLSAIMGVFPLKGRVSFLGEDLARYEIEDRVARGL CLVPEHRELFATMNVEDNLQLGAFRMSKAHAARGFEHVYTLFPKLKERRKQLAGTLSGGEQQMLAMGRALMGSPKMLMLD EPSLGLAPIIVAGIFEIVAKLREEGVSVLLVEQNAKAALKVADRAYVMELGEFVLSGKASEIATDQRVAASYLGFAETAA S
Sequences:
>Translated_241_residues MSTLLEVTDAHVSYGKVEAVRSVSLTVVENEIVTIIGANGAGKTTLLSAIMGVFPLKGRVSFLGEDLARYEIEDRVARGL CLVPEHRELFATMNVEDNLQLGAFRMSKAHAARGFEHVYTLFPKLKERRKQLAGTLSGGEQQMLAMGRALMGSPKMLMLD EPSLGLAPIIVAGIFEIVAKLREEGVSVLLVEQNAKAALKVADRAYVMELGEFVLSGKASEIATDQRVAASYLGFAETAA S >Mature_240_residues STLLEVTDAHVSYGKVEAVRSVSLTVVENEIVTIIGANGAGKTTLLSAIMGVFPLKGRVSFLGEDLARYEIEDRVARGLC LVPEHRELFATMNVEDNLQLGAFRMSKAHAARGFEHVYTLFPKLKERRKQLAGTLSGGEQQMLAMGRALMGSPKMLMLDE PSLGLAPIIVAGIFEIVAKLREEGVSVLLVEQNAKAALKVADRAYVMELGEFVLSGKASEIATDQRVAASYLGFAETAAS
Specific function: Component of the leucine-specific transport system [H]
COG id: COG0410
COG function: function code E; ABC-type branched-chain amino acid transport systems, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI47078218, Length=202, Percent_Identity=30.1980198019802, Blast_Score=96, Evalue=2e-20, Organism=Homo sapiens, GI45446740, Length=202, Percent_Identity=30.1980198019802, Blast_Score=96, Evalue=3e-20, Organism=Homo sapiens, GI116734710, Length=220, Percent_Identity=31.3636363636364, Blast_Score=95, Evalue=7e-20, Organism=Homo sapiens, GI21536376, Length=204, Percent_Identity=30.3921568627451, Blast_Score=93, Evalue=2e-19, Organism=Homo sapiens, GI27436953, Length=208, Percent_Identity=28.3653846153846, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI105990541, Length=201, Percent_Identity=30.8457711442786, Blast_Score=88, Evalue=7e-18, Organism=Homo sapiens, GI27477115, Length=207, Percent_Identity=28.9855072463768, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI27881501, Length=202, Percent_Identity=29.2079207920792, Blast_Score=84, Evalue=8e-17, Organism=Homo sapiens, GI30795238, Length=202, Percent_Identity=29.2079207920792, Blast_Score=84, Evalue=8e-17, Organism=Homo sapiens, GI153792144, Length=210, Percent_Identity=27.6190476190476, Blast_Score=82, Evalue=3e-16, Organism=Homo sapiens, GI150417984, Length=203, Percent_Identity=32.0197044334975, Blast_Score=82, Evalue=5e-16, Organism=Homo sapiens, GI31657092, Length=220, Percent_Identity=28.1818181818182, Blast_Score=81, Evalue=7e-16, Organism=Homo sapiens, GI27262624, Length=200, Percent_Identity=29, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI27262626, Length=200, Percent_Identity=29, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI4505771, Length=228, Percent_Identity=26.7543859649123, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI9961252, Length=228, Percent_Identity=26.7543859649123, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI9961250, Length=228, Percent_Identity=26.7543859649123, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI11967969, Length=244, Percent_Identity=24.1803278688525, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI42741659, Length=173, Percent_Identity=30.635838150289, Blast_Score=66, Evalue=3e-11, Organism=Escherichia coli, GI87082268, Length=232, Percent_Identity=47.8448275862069, Blast_Score=222, Evalue=2e-59, Organism=Escherichia coli, GI1789593, Length=227, Percent_Identity=33.0396475770925, Blast_Score=120, Evalue=6e-29, Organism=Escherichia coli, GI1789864, Length=254, Percent_Identity=29.5275590551181, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1787792, Length=235, Percent_Identity=29.3617021276596, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI87081791, Length=240, Percent_Identity=31.6666666666667, Blast_Score=98, Evalue=4e-22, Organism=Escherichia coli, GI1790190, Length=229, Percent_Identity=31.0043668122271, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1790162, Length=232, Percent_Identity=25.8620689655172, Blast_Score=94, Evalue=6e-21, Organism=Escherichia coli, GI1789672, Length=228, Percent_Identity=28.0701754385965, Blast_Score=91, Evalue=9e-20, Organism=Escherichia coli, GI1788761, Length=214, Percent_Identity=30.8411214953271, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1787029, Length=221, Percent_Identity=27.6018099547511, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1788472, Length=232, Percent_Identity=25, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1790525, Length=227, Percent_Identity=27.7533039647577, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1787089, Length=223, Percent_Identity=30.4932735426009, Blast_Score=88, Evalue=4e-19, Organism=Escherichia coli, GI1789991, Length=223, Percent_Identity=27.8026905829596, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI87081709, Length=242, Percent_Identity=26.4462809917355, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1786872, Length=211, Percent_Identity=29.3838862559242, Blast_Score=84, Evalue=6e-18, Organism=Escherichia coli, GI1788897, Length=203, Percent_Identity=29.064039408867, Blast_Score=82, Evalue=2e-17, Organism=Escherichia coli, GI1786253, Length=235, Percent_Identity=28.0851063829787, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI48994943, Length=216, Percent_Identity=29.6296296296296, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1787370, Length=247, Percent_Identity=28.7449392712551, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1786398, Length=218, Percent_Identity=27.5229357798165, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1786319, Length=219, Percent_Identity=29.6803652968037, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI48995001, Length=216, Percent_Identity=28.7037037037037, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI87081782, Length=202, Percent_Identity=30.6930693069307, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1786563, Length=203, Percent_Identity=28.0788177339901, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1788210, Length=230, Percent_Identity=30.4347826086957, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1787105, Length=234, Percent_Identity=28.6324786324786, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1787712, Length=223, Percent_Identity=29.5964125560538, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1789586, Length=260, Percent_Identity=27.3076923076923, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI1787759, Length=247, Percent_Identity=26.7206477732794, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI1790467, Length=236, Percent_Identity=26.271186440678, Blast_Score=72, Evalue=2e-14, Organism=Escherichia coli, GI87082267, Length=204, Percent_Identity=29.4117647058824, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI48994997, Length=238, Percent_Identity=28.9915966386555, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1790739, Length=229, Percent_Identity=28.3842794759825, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI1788450, Length=223, Percent_Identity=26.9058295964126, Blast_Score=71, Evalue=8e-14, Organism=Escherichia coli, GI1788225, Length=214, Percent_Identity=28.9719626168224, Blast_Score=70, Evalue=9e-14, Organism=Escherichia coli, GI1790544, Length=252, Percent_Identity=22.6190476190476, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1786981, Length=212, Percent_Identity=33.9622641509434, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1788165, Length=234, Percent_Identity=27.7777777777778, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1789873, Length=208, Percent_Identity=27.8846153846154, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI1789032, Length=222, Percent_Identity=27.4774774774775, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1788002, Length=209, Percent_Identity=26.3157894736842, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI1787500, Length=245, Percent_Identity=26.9387755102041, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI1786703, Length=197, Percent_Identity=29.9492385786802, Blast_Score=67, Evalue=8e-13, Organism=Escherichia coli, GI1789891, Length=206, Percent_Identity=29.126213592233, Blast_Score=67, Evalue=8e-13, Organism=Escherichia coli, GI48994883, Length=241, Percent_Identity=26.1410788381743, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI87081834, Length=195, Percent_Identity=26.1538461538462, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1786803, Length=243, Percent_Identity=25.1028806584362, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1787112, Length=233, Percent_Identity=27.8969957081545, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI1788506, Length=236, Percent_Identity=27.1186440677966, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI1787164, Length=215, Percent_Identity=28.3720930232558, Blast_Score=62, Evalue=5e-11, Organism=Escherichia coli, GI1788644, Length=234, Percent_Identity=26.9230769230769, Blast_Score=61, Evalue=7e-11, Organism=Caenorhabditis elegans, GI71983523, Length=221, Percent_Identity=29.4117647058824, Blast_Score=84, Evalue=6e-17, Organism=Caenorhabditis elegans, GI71983516, Length=221, Percent_Identity=29.4117647058824, Blast_Score=84, Evalue=7e-17, Organism=Caenorhabditis elegans, GI71983510, Length=221, Percent_Identity=29.4117647058824, Blast_Score=84, Evalue=7e-17, Organism=Caenorhabditis elegans, GI115533608, Length=194, Percent_Identity=28.8659793814433, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI193209708, Length=231, Percent_Identity=25.974025974026, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17510237, Length=216, Percent_Identity=25.462962962963, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17565586, Length=205, Percent_Identity=25.8536585365854, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI193211017, Length=216, Percent_Identity=26.3888888888889, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI25146777, Length=233, Percent_Identity=22.7467811158798, Blast_Score=65, Evalue=5e-11, Organism=Caenorhabditis elegans, GI193211015, Length=216, Percent_Identity=26.3888888888889, Blast_Score=64, Evalue=5e-11, Organism=Caenorhabditis elegans, GI71996809, Length=216, Percent_Identity=26.3888888888889, Blast_Score=64, Evalue=5e-11, Organism=Caenorhabditis elegans, GI212646699, Length=214, Percent_Identity=24.2990654205607, Blast_Score=64, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17541710, Length=172, Percent_Identity=27.906976744186, Blast_Score=64, Evalue=5e-11, Organism=Saccharomyces cerevisiae, GI6324498, Length=201, Percent_Identity=26.865671641791, Blast_Score=64, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6321752, Length=233, Percent_Identity=24.0343347639485, Blast_Score=64, Evalue=2e-11, Organism=Drosophila melanogaster, GI24666092, Length=207, Percent_Identity=30.9178743961353, Blast_Score=94, Evalue=1e-19, Organism=Drosophila melanogaster, GI221512771, Length=236, Percent_Identity=28.3898305084746, Blast_Score=93, Evalue=1e-19, Organism=Drosophila melanogaster, GI24643674, Length=210, Percent_Identity=28.5714285714286, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI24648314, Length=222, Percent_Identity=30.1801801801802, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI116007328, Length=204, Percent_Identity=29.4117647058824, Blast_Score=78, Evalue=5e-15, Organism=Drosophila melanogaster, GI28574150, Length=204, Percent_Identity=29.4117647058824, Blast_Score=78, Evalue=5e-15, Organism=Drosophila melanogaster, GI28573571, Length=217, Percent_Identity=24.8847926267281, Blast_Score=72, Evalue=2e-13, Organism=Drosophila melanogaster, GI28573573, Length=217, Percent_Identity=24.8847926267281, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI19920532, Length=214, Percent_Identity=26.6355140186916, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI24580930, Length=214, Percent_Identity=26.6355140186916, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI24650853, Length=201, Percent_Identity=24.3781094527363, Blast_Score=67, Evalue=7e-12, Organism=Drosophila melanogaster, GI24650855, Length=201, Percent_Identity=24.3781094527363, Blast_Score=67, Evalue=8e-12, Organism=Drosophila melanogaster, GI28574533, Length=218, Percent_Identity=24.3119266055046, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI281362751, Length=201, Percent_Identity=25.3731343283582, Blast_Score=65, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 25971; Mature: 25839
Theoretical pI: Translated: 6.15; Mature: 6.15
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTLLEVTDAHVSYGKVEAVRSVSLTVVENEIVTIIGANGAGKTTLLSAIMGVFPLKGRV CCCHHHHHHHHHCHHHHHHHHHEEEEEEECCEEEEEECCCCCHHHHHHHHHHHCCCCCHH SFLGEDLARYEIEDRVARGLCLVPEHRELFATMNVEDNLQLGAFRMSKAHAARGFEHVYT HHHHHHHHHHHHHHHHHCCCEECCCCHHHEEECCCCCCCEECHHHHHHHHHHHHHHHHHH LFPKLKERRKQLAGTLSGGEQQMLAMGRALMGSPKMLMLDEPSLGLAPIIVAGIFEIVAK HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHH LREEGVSVLLVEQNAKAALKVADRAYVMELGEFVLSGKASEIATDQRVAASYLGFAETAA HHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC S C >Mature Secondary Structure STLLEVTDAHVSYGKVEAVRSVSLTVVENEIVTIIGANGAGKTTLLSAIMGVFPLKGRV CCHHHHHHHHHCHHHHHHHHHEEEEEEECCEEEEEECCCCCHHHHHHHHHHHCCCCCHH SFLGEDLARYEIEDRVARGLCLVPEHRELFATMNVEDNLQLGAFRMSKAHAARGFEHVYT HHHHHHHHHHHHHHHHHCCCEECCCCHHHEEECCCCCCCEECHHHHHHHHHHHHHHHHHH LFPKLKERRKQLAGTLSGGEQQMLAMGRALMGSPKMLMLDEPSLGLAPIIVAGIFEIVAK HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHH LREEGVSVLLVEQNAKAALKVADRAYVMELGEFVLSGKASEIATDQRVAASYLGFAETAA HHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC S C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-leucine [Periplasm]; H2O; ATP; L-valine [Periplasm]; L-iso-leucine [Periplasm] [C]
Specific reaction: ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2195019; 8041620; 9278503 [H]