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The map label for this gene is rhiR [H]

Identifier: 146338047

GI number: 146338047

Start: 1004714

End: 1005442

Strand: Reverse

Name: rhiR [H]

Synonym: BRADO0942

Alternate gene names: 146338047

Gene position: 1005442-1004714 (Counterclockwise)

Preceding gene: 146338048

Following gene: 146338046

Centisome position: 13.48

GC content: 65.71

Gene sequence:

>729_bases
GTGATAGACGCGTATTGGGGCCGGCGGGCTCTGGACTACGTCGATGCGATCGAAGCGTCGAAGACCAGCGCGAGCGTGAT
TACCCAATTCGAGAAGATGATCTGCGATCTGGGCTTCCATGCCTACATCATGGCGGGCGTGCCGGCGCCGGGCCAATCGC
TGCAGCAGACGATCCTGGCCAATGGCTGGCCGCGGGAGTGGTTCGAGATGTATGCCCGGGAGCAGTTTCACCGCTGCGAT
CCGATTCCGCGGCACTGCGTGTCGACGCTGAATCCGTTCGCCTGGTCCGAAGTGCCCTATGACCGCGAGGACGATCCGGG
TGCGCATGAGGTCATGATGCGGGCGCGCGATTTCCGATTGAACGAAGGTTTCTGCGTGCCGATCCATTATGACGATGCGG
TCGGCGCCGTCAGCATCGCCGGCGAGCACCCCAATCTCGCGCCCGACGCCCGCGGCGCGCTGCACCTGATCAGCATCTTC
ACGCATTCGCGGCTGCGCGCGCTGGCCCGCGCGACCGCGGGCAACCCGGGTCGCCGCCTGTCGCGGATCGAGGCCGAGGT
GCTGAGCTGGGCGGCGCGCGGCAAGACGGCATGGGAGACGGCGCGCATTCTGGGCGTCTCTGAGCGCAACGTTCGCTGGC
ACCTCGAAGAGGCGCAGCGCAAGCTCGCGACCAAGAACAAGACGGCGACCGTTGCGACCGCTCTTGTCAACGGCGAGATC
TCGATCTGA

Upstream 100 bases:

>100_bases
GCCACACGTTCAACGAACTATCGACCTAAAGCTCCAATTTGCGGTTGACAGCCTTTTGTCCGTGGCTAGCTTGGCTTTGG
GCGGAGACTCTCACATGCAA

Downstream 100 bases:

>100_bases
TCTGGCTTTTCTCCCACTGGATCATTTCGAGTACATCGGCAAATTCCAAACCCCAAGTTGATTCAGACGACCGGGGGTTT
CGATGCCTGAGATTCATGTC

Product: putative N-acyl homoserine lactone transcriptional regulator, LuxR-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MIDAYWGRRALDYVDAIEASKTSASVITQFEKMICDLGFHAYIMAGVPAPGQSLQQTILANGWPREWFEMYAREQFHRCD
PIPRHCVSTLNPFAWSEVPYDREDDPGAHEVMMRARDFRLNEGFCVPIHYDDAVGAVSIAGEHPNLAPDARGALHLISIF
THSRLRALARATAGNPGRRLSRIEAEVLSWAARGKTAWETARILGVSERNVRWHLEEAQRKLATKNKTATVATALVNGEI
SI

Sequences:

>Translated_242_residues
MIDAYWGRRALDYVDAIEASKTSASVITQFEKMICDLGFHAYIMAGVPAPGQSLQQTILANGWPREWFEMYAREQFHRCD
PIPRHCVSTLNPFAWSEVPYDREDDPGAHEVMMRARDFRLNEGFCVPIHYDDAVGAVSIAGEHPNLAPDARGALHLISIF
THSRLRALARATAGNPGRRLSRIEAEVLSWAARGKTAWETARILGVSERNVRWHLEEAQRKLATKNKTATVATALVNGEI
SI
>Mature_242_residues
MIDAYWGRRALDYVDAIEASKTSASVITQFEKMICDLGFHAYIMAGVPAPGQSLQQTILANGWPREWFEMYAREQFHRCD
PIPRHCVSTLNPFAWSEVPYDREDDPGAHEVMMRARDFRLNEGFCVPIHYDDAVGAVSIAGEHPNLAPDARGALHLISIF
THSRLRALARATAGNPGRRLSRIEAEVLSWAARGKTAWETARILGVSERNVRWHLEEAQRKLATKNKTATVATALVNGEI
SI

Specific function: Positive regulator of the rhiABC operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR005143
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03472 Autoind_bind; PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 27096; Mature: 27096

Theoretical pI: Translated: 7.29; Mature: 7.29

Prosite motif: PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDAYWGRRALDYVDAIEASKTSASVITQFEKMICDLGFHAYIMAGVPAPGQSLQQTILA
CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHEEEECCCCCCHHHHHHHHC
NGWPREWFEMYAREQFHRCDPIPRHCVSTLNPFAWSEVPYDREDDPGAHEVMMRARDFRL
CCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
NEGFCVPIHYDDAVGAVSIAGEHPNLAPDARGALHLISIFTHSRLRALARATAGNPGRRL
CCCEEEEEEECCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
SRIEAEVLSWAARGKTAWETARILGVSERNVRWHLEEAQRKLATKNKTATVATALVNGEI
HHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEHHHHHHHHHHHCCCHHHHHHHEECCCC
SI
CC
>Mature Secondary Structure
MIDAYWGRRALDYVDAIEASKTSASVITQFEKMICDLGFHAYIMAGVPAPGQSLQQTILA
CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHEEEECCCCCCHHHHHHHHC
NGWPREWFEMYAREQFHRCDPIPRHCVSTLNPFAWSEVPYDREDDPGAHEVMMRARDFRL
CCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
NEGFCVPIHYDDAVGAVSIAGEHPNLAPDARGALHLISIFTHSRLRALARATAGNPGRRL
CCCEEEEEEECCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
SRIEAEVLSWAARGKTAWETARILGVSERNVRWHLEEAQRKLATKNKTATVATALVNGEI
HHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEHHHHHHHHHHHCCCHHHHHHHEECCCC
SI
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1597418 [H]