Click here to switch to the map view.

The map label for this gene is yagA [H]

Identifier: 146337484

GI number: 146337484

Start: 340970

End: 342127

Strand: Reverse

Name: yagA [H]

Synonym: BRADO0330

Alternate gene names: 146337484

Gene position: 342127-340970 (Counterclockwise)

Preceding gene: 146337485

Following gene: 146337483

Centisome position: 4.59

GC content: 62.09

Gene sequence:

>1158_bases
ATGCCGTGGCGAGAGGTGTCTGTCATGGACCAGCGACGAGAGTTTGTGATGCTTGCCAAGCAGGAAGGGGCCAACCGGCG
GGAGCTGTGTCGGCGGTTCAGCATCAGCCCCCAGACGGGCTACAAATGGATCCAGCGGCATGACACTGGCGACACGGCGC
TGGCAGACCGGTCGCGGCGGCCTCATCGCAGTCCTGAGCGCACTGCGGCTGCGATCGAGCAGCAGATTGTCGCGTTGCGC
GATGCTCACCCGGCCTGGGGCGCGCGCAAGCTCGCACGTCGTCTCGAGCGCGACGGGCAAGCTGTCCCGGCGATATCCAC
CGTGCACACCATCCTGCGCCGCTACGATCGCGTGATGGAGCCTGCAGGCACGCCCGGACAGCCCTACACTCGGTTCGAGA
AGGATACGCCCAATCAGCTTTGGCAGATGGACTTCAAGGGACACAGTGCGCTGGAAAACGGTGTGTCCTGTCACCCGCTG
ACGGCGTTGGACGATCACTCGCGCTTCTCGTTGTGCCTGGCGGCTTGTGACAACGAGCGCGGCTCTACGGTTAAAGGACA
TCTGGAGACGACGTTCCGCCGCTATGGATTGCCGGATGCGATGTTCGTCGACAATGGTGGCCCTTGGGGCTTTACACTTG
AAGACCCCTGGACCGCACTGACGGTCTGGCTTCTGAAGCTCGGCGTTCGAACAATCCACAGCCGGCCCTACCATCCTCAG
AGCCGCGGCAAGAACGAACGCTTCCACCGCAGTCTGAAGGCTGAGGTGTTTGCCTTCAGGCGCTACCGTGACCTTCCCGA
TGTCCAGCGGGCATTCGACGAATGGCGCTCCATCTACAATCTCGACCGGCCGCACGAGGCTCTGAACTTCGACGTGCCGG
CAAGCCGCTATCGACCAAGCCAACGCACGATGCCGGACCGCCTTCCAGTAGTCGAATACGACGAGGGTGAGACCGTTCGC
TCCGTGTCGACCACCAAGGCCTACGTCAGCTTCGAGGGACGGCTGTGGAAAGTCCCGCAAGCCTTTCGCGGAGAGCGGCT
GGCTATCCGGCCACTCAGCGCCGACGGACAGTTCGGAATATTCTTTGCCGCGCATCAGATCGCAGCCATCGATTTGCGCG
ACCCCAAAAGTGTCAACTATGTCCCCGAACAGGTGTAA

Upstream 100 bases:

>100_bases
TGCTTCGCTGCTGTTCAGCCCGGGGACATAGCTGACGGGTGTTCGGACACATGGTTGACACGTCAAAATCGGCTCGATTC
GTCAAGCAAAGGGGCGAGCG

Downstream 100 bases:

>100_bases
GCTATGTCTCCGGGCTGAACACTGCGCTCGCAATGACGACGTGGTGAGAACGGAGATCCCATGATGCAACAGCGCAACGC
CACCGTCGCCGTGATCGGCG

Product: putative transposase insertion element

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 385; Mature: 384

Protein sequence:

>385_residues
MPWREVSVMDQRREFVMLAKQEGANRRELCRRFSISPQTGYKWIQRHDTGDTALADRSRRPHRSPERTAAAIEQQIVALR
DAHPAWGARKLARRLERDGQAVPAISTVHTILRRYDRVMEPAGTPGQPYTRFEKDTPNQLWQMDFKGHSALENGVSCHPL
TALDDHSRFSLCLAACDNERGSTVKGHLETTFRRYGLPDAMFVDNGGPWGFTLEDPWTALTVWLLKLGVRTIHSRPYHPQ
SRGKNERFHRSLKAEVFAFRRYRDLPDVQRAFDEWRSIYNLDRPHEALNFDVPASRYRPSQRTMPDRLPVVEYDEGETVR
SVSTTKAYVSFEGRLWKVPQAFRGERLAIRPLSADGQFGIFFAAHQIAAIDLRDPKSVNYVPEQV

Sequences:

>Translated_385_residues
MPWREVSVMDQRREFVMLAKQEGANRRELCRRFSISPQTGYKWIQRHDTGDTALADRSRRPHRSPERTAAAIEQQIVALR
DAHPAWGARKLARRLERDGQAVPAISTVHTILRRYDRVMEPAGTPGQPYTRFEKDTPNQLWQMDFKGHSALENGVSCHPL
TALDDHSRFSLCLAACDNERGSTVKGHLETTFRRYGLPDAMFVDNGGPWGFTLEDPWTALTVWLLKLGVRTIHSRPYHPQ
SRGKNERFHRSLKAEVFAFRRYRDLPDVQRAFDEWRSIYNLDRPHEALNFDVPASRYRPSQRTMPDRLPVVEYDEGETVR
SVSTTKAYVSFEGRLWKVPQAFRGERLAIRPLSADGQFGIFFAAHQIAAIDLRDPKSVNYVPEQV
>Mature_384_residues
PWREVSVMDQRREFVMLAKQEGANRRELCRRFSISPQTGYKWIQRHDTGDTALADRSRRPHRSPERTAAAIEQQIVALRD
AHPAWGARKLARRLERDGQAVPAISTVHTILRRYDRVMEPAGTPGQPYTRFEKDTPNQLWQMDFKGHSALENGVSCHPLT
ALDDHSRFSLCLAACDNERGSTVKGHLETTFRRYGLPDAMFVDNGGPWGFTLEDPWTALTVWLLKLGVRTIHSRPYHPQS
RGKNERFHRSLKAEVFAFRRYRDLPDVQRAFDEWRSIYNLDRPHEALNFDVPASRYRPSQRTMPDRLPVVEYDEGETVRS
VSTTKAYVSFEGRLWKVPQAFRGERLAIRPLSADGQFGIFFAAHQIAAIDLRDPKSVNYVPEQV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786462, Length=375, Percent_Identity=51.4666666666667, Blast_Score=378, Evalue=1e-106,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 44438; Mature: 44306

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPWREVSVMDQRREFVMLAKQEGANRRELCRRFSISPQTGYKWIQRHDTGDTALADRSRR
CCCCHHHHHHHHHHHEEEEHHCCCCHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHCCCC
PHRSPERTAAAIEQQIVALRDAHPAWGARKLARRLERDGQAVPAISTVHTILRRYDRVME
CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHC
PAGTPGQPYTRFEKDTPNQLWQMDFKGHSALENGVSCHPLTALDDHSRFSLCLAACDNER
CCCCCCCCCCCCCCCCCHHHEEECCCCCHHHHCCCCCCCCCCCCCCCHHEEHEEECCCCC
GSTVKGHLETTFRRYGLPDAMFVDNGGPWGFTLEDPWTALTVWLLKLGVRTIHSRPYHPQ
CCEEEHHHHHHHHHHCCCCEEEEECCCCCCEECCCCHHHHHHHHHHHHHHHHHCCCCCCH
SRGKNERFHRSLKAEVFAFRRYRDLPDVQRAFDEWRSIYNLDRPHEALNFDVPASRYRPS
HCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHCCCCCCHHHCCCC
QRTMPDRLPVVEYDEGETVRSVSTTKAYVSFEGRLWKVPQAFRGERLAIRPLSADGQFGI
CCCCCCCCCEEECCCCCCCHHHHHEEEEEEECCEEEECCHHHCCCEEEEEEECCCCCEEE
FFAAHQIAAIDLRDPKSVNYVPEQV
EEEECEEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure 
PWREVSVMDQRREFVMLAKQEGANRRELCRRFSISPQTGYKWIQRHDTGDTALADRSRR
CCCHHHHHHHHHHHEEEEHHCCCCHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHCCCC
PHRSPERTAAAIEQQIVALRDAHPAWGARKLARRLERDGQAVPAISTVHTILRRYDRVME
CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHC
PAGTPGQPYTRFEKDTPNQLWQMDFKGHSALENGVSCHPLTALDDHSRFSLCLAACDNER
CCCCCCCCCCCCCCCCCHHHEEECCCCCHHHHCCCCCCCCCCCCCCCHHEEHEEECCCCC
GSTVKGHLETTFRRYGLPDAMFVDNGGPWGFTLEDPWTALTVWLLKLGVRTIHSRPYHPQ
CCEEEHHHHHHHHHHCCCCEEEEECCCCCCEECCCCHHHHHHHHHHHHHHHHHCCCCCCH
SRGKNERFHRSLKAEVFAFRRYRDLPDVQRAFDEWRSIYNLDRPHEALNFDVPASRYRPS
HCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHCCCCCCHHHCCCC
QRTMPDRLPVVEYDEGETVRSVSTTKAYVSFEGRLWKVPQAFRGERLAIRPLSADGQFGI
CCCCCCCCCEEECCCCCCCHHHHHEEEEEEECCEEEECCHHHCCCEEEEEEECCCCCEEE
FFAAHQIAAIDLRDPKSVNYVPEQV
EEEECEEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 8113168 [H]