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The map label for this gene is yfdE [H]

Identifier: 146337276

GI number: 146337276

Start: 118176

End: 119378

Strand: Direct

Name: yfdE [H]

Synonym: BRADO0103

Alternate gene names: 146337276

Gene position: 118176-119378 (Clockwise)

Preceding gene: 146337275

Following gene: 146337277

Centisome position: 1.58

GC content: 66.67

Gene sequence:

>1203_bases
ATGACCCCTCAATTTGCTCCCGGCGCCATGGCCGGATTGCGCGTGATCGATCTCACGCGCGTGCTCGGCGGCCCCTATTG
CACGCAGATCCTGGCCGATCACGGCGCCGACGTGATCAAGGTCGAGCCGCCCGCCGGCGACGAGGTGCGCGACTGGGGCC
CTCCCTTCCACGACGAGGACGCGGCCTACTTCGTCGGCATCAACCGCAACAAGCGCTCGATCGGCCTCGACCTCGCCTCC
GAGGGCGGCCGGGTCGTCTTGTTGAAGATGCTCGAAACGGCCGATGTGCTGATCGAGAACTTCAAGCCGGGCACGCTGGA
AAAATGGGGGATCGGCAGCGACGTGCTGCGCGAGAAATTCCCAAAGCTCGTGCATTGCCGCATCTGCGGCTTCGGCGCCG
ACGGTCCACGCGGCGGCAATCCCGGCTATGATGCGATCATCCAGGCGATGACCGGCATGATCGCGGCGACCGGTTCGCCC
GAGAGCGGCCCGATGCGGATCGGCGTGCCGCTGGTCGACATCACCACGGGACTCTATGCCGCCATTGGCATCCTGATGGC
GCTGTCGGAGCGGCAACGCTCGGGACAAGGCCAGTTCCTCGAGGTCACCCTGTACGAGACCGGCCTCGCGATCATGCATC
CGCATACCGCGAACTACTTCATGCACGGCAAGCCGCCGTCACTGACCGGCAACGAGCATCCGAACCTCGTTCCCTACGCG
ATCTTCCCCACGAAGACCGACGACATCTTCATCGGCGTCGGCAATGACGGCACCTTCCGCAAGCTCGCGCGTGAGATCGG
CCGCCCCGAGCTCGGCACCGATCCGCGCTTCGCCCGCAACAAGGACCGCGTCGCCAATCGCGAGGCGCTGCGCGCCGAGC
TCGCCGCCGTGTTCAGCCAGTTCGAGGCCGAGCCGCTGTGCGATCGGCTGCTCGCCGCCGGCCTGCCCGCGGGACCGGTG
CAGAAGATCGATCAGGCGCTGACCAACCCGCACACGTTCCACCGCGGCGATGTCATCGAGAAGGACTGGTACAAGGGCGT
CGCTTCGCCGATCCGGCTCGAACGCACCAAGCCGAGCCTGCGCTCGACGCCGCCGAAATTCAGCCAGCACGCGCGCGATG
TGCTCGGCGAGTTCGGCTACTCCGATAGCGACATCGACGCGCTGGTCGCGCAGGGAACCGTCTGCACGGAGCGCAAGCGC
TGA

Upstream 100 bases:

>100_bases
CTCGCCTTTTCGCGCGGCTGCCTCCGCGGCGGCGCGTTTGCGCAAGCGCTGCGGCAATGCTTAATGACCGCGAGTTGACA
CCAACCTCGCGATCATCCCG

Downstream 100 bases:

>100_bases
TCATCACCGACCGAGTTGTCGCCGCGCCGCACCTTCGCAGCGCAGCGACGCCCCACGTGATTCACTGCGTTTGTCCGAAG
GGGTGGTCACGGCTTTCCCG

Product: putative caiB/baiF CoA-transferase family protein Formyl-CoA transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 400; Mature: 399

Protein sequence:

>400_residues
MTPQFAPGAMAGLRVIDLTRVLGGPYCTQILADHGADVIKVEPPAGDEVRDWGPPFHDEDAAYFVGINRNKRSIGLDLAS
EGGRVVLLKMLETADVLIENFKPGTLEKWGIGSDVLREKFPKLVHCRICGFGADGPRGGNPGYDAIIQAMTGMIAATGSP
ESGPMRIGVPLVDITTGLYAAIGILMALSERQRSGQGQFLEVTLYETGLAIMHPHTANYFMHGKPPSLTGNEHPNLVPYA
IFPTKTDDIFIGVGNDGTFRKLAREIGRPELGTDPRFARNKDRVANREALRAELAAVFSQFEAEPLCDRLLAAGLPAGPV
QKIDQALTNPHTFHRGDVIEKDWYKGVASPIRLERTKPSLRSTPPKFSQHARDVLGEFGYSDSDIDALVAQGTVCTERKR

Sequences:

>Translated_400_residues
MTPQFAPGAMAGLRVIDLTRVLGGPYCTQILADHGADVIKVEPPAGDEVRDWGPPFHDEDAAYFVGINRNKRSIGLDLAS
EGGRVVLLKMLETADVLIENFKPGTLEKWGIGSDVLREKFPKLVHCRICGFGADGPRGGNPGYDAIIQAMTGMIAATGSP
ESGPMRIGVPLVDITTGLYAAIGILMALSERQRSGQGQFLEVTLYETGLAIMHPHTANYFMHGKPPSLTGNEHPNLVPYA
IFPTKTDDIFIGVGNDGTFRKLAREIGRPELGTDPRFARNKDRVANREALRAELAAVFSQFEAEPLCDRLLAAGLPAGPV
QKIDQALTNPHTFHRGDVIEKDWYKGVASPIRLERTKPSLRSTPPKFSQHARDVLGEFGYSDSDIDALVAQGTVCTERKR
>Mature_399_residues
TPQFAPGAMAGLRVIDLTRVLGGPYCTQILADHGADVIKVEPPAGDEVRDWGPPFHDEDAAYFVGINRNKRSIGLDLASE
GGRVVLLKMLETADVLIENFKPGTLEKWGIGSDVLREKFPKLVHCRICGFGADGPRGGNPGYDAIIQAMTGMIAATGSPE
SGPMRIGVPLVDITTGLYAAIGILMALSERQRSGQGQFLEVTLYETGLAIMHPHTANYFMHGKPPSLTGNEHPNLVPYAI
FPTKTDDIFIGVGNDGTFRKLAREIGRPELGTDPRFARNKDRVANREALRAELAAVFSQFEAEPLCDRLLAAGLPAGPVQ
KIDQALTNPHTFHRGDVIEKDWYKGVASPIRLERTKPSLRSTPPKFSQHARDVLGEFGYSDSDIDALVAQGTVCTERKR

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=396, Percent_Identity=34.0909090909091, Blast_Score=246, Evalue=4e-65,
Organism=Homo sapiens, GI300863124, Length=422, Percent_Identity=31.9905213270142, Blast_Score=232, Evalue=6e-61,
Organism=Homo sapiens, GI13376042, Length=422, Percent_Identity=29.6208530805687, Blast_Score=192, Evalue=3e-49,
Organism=Homo sapiens, GI300863126, Length=396, Percent_Identity=30.5555555555556, Blast_Score=192, Evalue=4e-49,
Organism=Homo sapiens, GI266456254, Length=391, Percent_Identity=26.8542199488491, Blast_Score=124, Evalue=1e-28,
Organism=Homo sapiens, GI42794625, Length=391, Percent_Identity=26.8542199488491, Blast_Score=124, Evalue=1e-28,
Organism=Homo sapiens, GI266458393, Length=199, Percent_Identity=32.6633165829146, Blast_Score=108, Evalue=6e-24,
Organism=Homo sapiens, GI266458397, Length=200, Percent_Identity=33, Blast_Score=108, Evalue=7e-24,
Organism=Homo sapiens, GI42822893, Length=145, Percent_Identity=33.1034482758621, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI266458395, Length=145, Percent_Identity=33.1034482758621, Blast_Score=84, Evalue=3e-16,
Organism=Escherichia coli, GI87082093, Length=380, Percent_Identity=36.3157894736842, Blast_Score=249, Evalue=2e-67,
Organism=Escherichia coli, GI1788717, Length=407, Percent_Identity=27.5184275184275, Blast_Score=148, Evalue=5e-37,
Organism=Escherichia coli, GI1786222, Length=410, Percent_Identity=23.6585365853659, Blast_Score=100, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI32564160, Length=252, Percent_Identity=28.5714285714286, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI115535051, Length=253, Percent_Identity=30.4347826086957, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24648431, Length=388, Percent_Identity=38.9175257731959, Blast_Score=268, Evalue=4e-72,
Organism=Drosophila melanogaster, GI24585488, Length=313, Percent_Identity=27.1565495207668, Blast_Score=101, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 43478; Mature: 43347

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPQFAPGAMAGLRVIDLTRVLGGPYCTQILADHGADVIKVEPPAGDEVRDWGPPFHDED
CCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEECCCCCCCCHHCCCCCCCCC
AAYFVGINRNKRSIGLDLASEGGRVVLLKMLETADVLIENFKPGTLEKWGIGSDVLREKF
CEEEEEECCCCCEECCEECCCCCCEEEEEHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHC
PKLVHCRICGFGADGPRGGNPGYDAIIQAMTGMIAATGSPESGPMRIGVPLVDITTGLYA
CCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHEEECCCCCCCCEEECCCHHHHHHHHHH
AIGILMALSERQRSGQGQFLEVTLYETGLAIMHPHTANYFMHGKPPSLTGNEHPNLVPYA
HHHHHHHHHHHHHCCCCCEEEEEEEECCEEEECCCCCCEEECCCCCCCCCCCCCCEEEEE
IFPTKTDDIFIGVGNDGTFRKLAREIGRPELGTDPRFARNKDRVANREALRAELAAVFSQ
EECCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
FEAEPLCDRLLAAGLPAGPVQKIDQALTNPHTFHRGDVIEKDWYKGVASPIRLERTKPSL
HCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCEEEECCCCHH
RSTPPKFSQHARDVLGEFGYSDSDIDALVAQGTVCTERKR
HCCCCHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TPQFAPGAMAGLRVIDLTRVLGGPYCTQILADHGADVIKVEPPAGDEVRDWGPPFHDED
CCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEECCCCCCCCHHCCCCCCCCC
AAYFVGINRNKRSIGLDLASEGGRVVLLKMLETADVLIENFKPGTLEKWGIGSDVLREKF
CEEEEEECCCCCEECCEECCCCCCEEEEEHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHC
PKLVHCRICGFGADGPRGGNPGYDAIIQAMTGMIAATGSPESGPMRIGVPLVDITTGLYA
CCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHEEECCCCCCCCEEECCCHHHHHHHHHH
AIGILMALSERQRSGQGQFLEVTLYETGLAIMHPHTANYFMHGKPPSLTGNEHPNLVPYA
HHHHHHHHHHHHHCCCCCEEEEEEEECCEEEECCCCCCEEECCCCCCCCCCCCCCEEEEE
IFPTKTDDIFIGVGNDGTFRKLAREIGRPELGTDPRFARNKDRVANREALRAELAAVFSQ
EECCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
FEAEPLCDRLLAAGLPAGPVQKIDQALTNPHTFHRGDVIEKDWYKGVASPIRLERTKPSL
HCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCEEEECCCCHH
RSTPPKFSQHARDVLGEFGYSDSDIDALVAQGTVCTERKR
HCCCCHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]