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The map label for this gene is ureD

Identifier: 146302558

GI number: 146302558

Start: 5849342

End: 5850175

Strand: Reverse

Name: ureD

Synonym: Fjoh_4831

Alternate gene names: 146302558

Gene position: 5850175-5849342 (Counterclockwise)

Preceding gene: 146302559

Following gene: 146302557

Centisome position: 95.95

GC content: 35.49

Gene sequence:

>834_bases
ATGATCAATAAACTAAATATTGTTAGTGGATTTAAAGAAGGACGTTCTTATCTAAAAGATGCCTTCTTTACCCGCCCTTT
TCGCATAGCAGATATAAAAGAAGACAAAACAGATCCTTCTCTTTATCTGATGCTGATGAGCTCTTCTCCCGGAATACTCG
ATAATGATCATTATGATATAAACATTCAAATCGAATCTGAAAGCCGTTTAATGCTAGAGTCTCAATCGTATCAAAGATTG
TTTAATATGCAGAACGGTGCTGTACAGCAAATGAATGTTTCATTAGCAGACAAAAGTACTTTTAGTTATGTGCAGCATCC
CATTGTACCTCACGAGCAGTCTATTTTTAAAGCATATAATGTCTTTAATCTTACAGATAATTGCAGTCTGACTGTGGGAG
AGATCATTACTTGCGGCCGAAAACATTCTGGAGAAGTATTTCTTTTTTCAAAATTCCAAAATCTAACCGAAGTATTTCAT
AATGGAAAATTGGTAGTTAAAGATAATGTGCTTTTGCAGCCACTTTTGGCAGATGTTCAAACTTTAGGACAGATGGAAGG
TTTTACACATCAGGCAACTCTTATGTATATCAATACTGGAATTGAGGATGTTGAATCGTGTATTGAATTGGCTTATGCCG
AACTGCAGTCTGAAGAAAATATTGCTTTTGGAGTTTCCAAGCCTTTTGCAAATGGCATGATAGTACGTGTTTTGGGCAAT
GGCGGAGAACAGCTTTATAATGCATTTCGTAAAATACAGCGTAAGCTTTGGATAGCAGAAGAGAAATTGAATATTAAAAG
TCAGGTGACTGATCTTGCTGAAAATTATATCTAA

Upstream 100 bases:

>100_bases
TGTTATAGGCTGGATTAAAAAATATGCCTTACTGGAAAATATAGAAGAACCGCAGCTGGTTCGATAATTCTATTTAGTGT
ACAACATTCAACTATTTTAA

Downstream 100 bases:

>100_bases
ATGGATACTACATTAACTACGCTGGTATTATCAGCTATTACAATAAGCTGTCTGCACACAGCATCAGGGCCGGATCATTA
TCTGCCATTCATTGTATTAT

Product: urease accessory protein UreD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 277

Protein sequence:

>277_residues
MINKLNIVSGFKEGRSYLKDAFFTRPFRIADIKEDKTDPSLYLMLMSSSPGILDNDHYDINIQIESESRLMLESQSYQRL
FNMQNGAVQQMNVSLADKSTFSYVQHPIVPHEQSIFKAYNVFNLTDNCSLTVGEIITCGRKHSGEVFLFSKFQNLTEVFH
NGKLVVKDNVLLQPLLADVQTLGQMEGFTHQATLMYINTGIEDVESCIELAYAELQSEENIAFGVSKPFANGMIVRVLGN
GGEQLYNAFRKIQRKLWIAEEKLNIKSQVTDLAENYI

Sequences:

>Translated_277_residues
MINKLNIVSGFKEGRSYLKDAFFTRPFRIADIKEDKTDPSLYLMLMSSSPGILDNDHYDINIQIESESRLMLESQSYQRL
FNMQNGAVQQMNVSLADKSTFSYVQHPIVPHEQSIFKAYNVFNLTDNCSLTVGEIITCGRKHSGEVFLFSKFQNLTEVFH
NGKLVVKDNVLLQPLLADVQTLGQMEGFTHQATLMYINTGIEDVESCIELAYAELQSEENIAFGVSKPFANGMIVRVLGN
GGEQLYNAFRKIQRKLWIAEEKLNIKSQVTDLAENYI
>Mature_277_residues
MINKLNIVSGFKEGRSYLKDAFFTRPFRIADIKEDKTDPSLYLMLMSSSPGILDNDHYDINIQIESESRLMLESQSYQRL
FNMQNGAVQQMNVSLADKSTFSYVQHPIVPHEQSIFKAYNVFNLTDNCSLTVGEIITCGRKHSGEVFLFSKFQNLTEVFH
NGKLVVKDNVLLQPLLADVQTLGQMEGFTHQATLMYINTGIEDVESCIELAYAELQSEENIAFGVSKPFANGMIVRVLGN
GGEQLYNAFRKIQRKLWIAEEKLNIKSQVTDLAENYI

Specific function: Required for maturation of urease via the functional incorporation of the urease nickel metallocenter

COG id: COG0829

COG function: function code O; Urease accessory protein UreH

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ureD family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): URED_FLAJ1 (A5FAE2)

Other databases:

- EMBL:   CP000685
- RefSeq:   YP_001197149.1
- STRING:   A5FAE2
- GeneID:   5089459
- GenomeReviews:   CP000685_GR
- KEGG:   fjo:Fjoh_4831
- eggNOG:   COG0829
- OMA:   CKLRITS
- ProtClustDB:   CLSK852554
- BioCyc:   FJOH376686:FJOH_4831-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01384
- InterPro:   IPR002669

Pfam domain/function: PF01774 UreD

EC number: NA

Molecular weight: Translated: 31458; Mature: 31458

Theoretical pI: Translated: 5.17; Mature: 5.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINKLNIVSGFKEGRSYLKDAFFTRPFRIADIKEDKTDPSLYLMLMSSSPGILDNDHYDI
CCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEEECCCCCCCCCEEEE
NIQIESESRLMLESQSYQRLFNMQNGAVQQMNVSLADKSTFSYVQHPIVPHEQSIFKAYN
EEEECCCCEEEEHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHCCCCCCHHHHHHHHH
VFNLTDNCSLTVGEIITCGRKHSGEVFLFSKFQNLTEVFHNGKLVVKDNVLLQPLLADVQ
EEECCCCCCEEHHHHHHCCCCCCCCEEEEHHHHHHHHHHHCCEEEEECCHHHHHHHHHHH
TLGQMEGFTHQATLMYINTGIEDVESCIELAYAELQSEENIAFGVSKPFANGMIVRVLGN
HHHHHCCCCEEEEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEECC
GGEQLYNAFRKIQRKLWIAEEKLNIKSQVTDLAENYI
CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
>Mature Secondary Structure
MINKLNIVSGFKEGRSYLKDAFFTRPFRIADIKEDKTDPSLYLMLMSSSPGILDNDHYDI
CCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEEECCCCCCCCCEEEE
NIQIESESRLMLESQSYQRLFNMQNGAVQQMNVSLADKSTFSYVQHPIVPHEQSIFKAYN
EEEECCCCEEEEHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHCCCCCCHHHHHHHHH
VFNLTDNCSLTVGEIITCGRKHSGEVFLFSKFQNLTEVFHNGKLVVKDNVLLQPLLADVQ
EEECCCCCCEEHHHHHHCCCCCCCCEEEEHHHHHHHHHHHCCEEEEECCHHHHHHHHHHH
TLGQMEGFTHQATLMYINTGIEDVESCIELAYAELQSEENIAFGVSKPFANGMIVRVLGN
HHHHHCCCCEEEEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEECC
GGEQLYNAFRKIQRKLWIAEEKLNIKSQVTDLAENYI
CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA