Click here to switch to the map view.

The map label for this gene is gatR [H]

Identifier: 146302540

GI number: 146302540

Start: 5822483

End: 5823178

Strand: Reverse

Name: gatR [H]

Synonym: Fjoh_4813

Alternate gene names: 146302540

Gene position: 5823178-5822483 (Counterclockwise)

Preceding gene: 146302548

Following gene: 146302539

Centisome position: 95.51

GC content: 34.05

Gene sequence:

>696_bases
ATGCTGAAAGCCGAAAGACATAAATATATAATGACTAAGCTTGTTGAAGAACAGAAAGTTGTCACAACTGATTTAGCTTT
GGCTCTGGATTTGTCTGAAGATACCATTAGAAGGGATTTAAACGAACTTGACAGTAAGAAACTACTGGAAAAGGTCTATG
GCGGAGCAGTGCAGGTTAAAGAAAAATCTGCAGATGTTTTTGATATTCATATTTCTGGTGAAGAAGAAAAAAAGCAGATC
GTCACAAAAGCATTGTCGTTACTTCATGACGACCAGGTTATTATAATGAGCGGAGGAAGTACAAATTTGGTATTTGCAAA
ACTTATTCCATCAGATTTAAAAGCTACAATATATACGTATAGTCTTCCAATCGCTATGCAGCTGTCTCAGCATCCTAATA
TAGATTTAATATTTATTGGCGGGAAAATGCAGAAAAACGCAATGGTTACAATTGGTATGGATGTAATTCAGGTTGTGTCA
AAAATTAAGGCCGATATTTGTTTTATAGGAGCGAGCAGTATTAATATAAAACAAGGACTTACAGAAGTTGGTTATGAAGT
TTCAATGGTTAAAAAAGCAATGATAGAAGCTTCTGATAAGGTTGTGTCGATGTTTTCTTCTAATAAATTAAATACCAAAA
TGCCGCATGTTGTCTGCGATTTAAATCAATTAGATACTATAGTTACCAATCTGTAA

Upstream 100 bases:

>100_bases
TTTAAACTTAAAAAACGCAAACTATTGCAGTTTCTGGTTAATCCTACGCTTTCAATAGAATTATTTGATATATTTGTCCT
GAATTTTAACTTTTTAAAAA

Downstream 100 bases:

>100_bases
CCAGAAGATATAAGACTGGAAGAATATAGGAAATCTGGCGTATTTATACTGTAGTTTAAAAACTAAGTCAAACTTTTCTG
CGTTTTTTTGCGTTATTTGA

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MLKAERHKYIMTKLVEEQKVVTTDLALALDLSEDTIRRDLNELDSKKLLEKVYGGAVQVKEKSADVFDIHISGEEEKKQI
VTKALSLLHDDQVIIMSGGSTNLVFAKLIPSDLKATIYTYSLPIAMQLSQHPNIDLIFIGGKMQKNAMVTIGMDVIQVVS
KIKADICFIGASSINIKQGLTEVGYEVSMVKKAMIEASDKVVSMFSSNKLNTKMPHVVCDLNQLDTIVTNL

Sequences:

>Translated_231_residues
MLKAERHKYIMTKLVEEQKVVTTDLALALDLSEDTIRRDLNELDSKKLLEKVYGGAVQVKEKSADVFDIHISGEEEKKQI
VTKALSLLHDDQVIIMSGGSTNLVFAKLIPSDLKATIYTYSLPIAMQLSQHPNIDLIFIGGKMQKNAMVTIGMDVIQVVS
KIKADICFIGASSINIKQGLTEVGYEVSMVKKAMIEASDKVVSMFSSNKLNTKMPHVVCDLNQLDTIVTNL
>Mature_231_residues
MLKAERHKYIMTKLVEEQKVVTTDLALALDLSEDTIRRDLNELDSKKLLEKVYGGAVQVKEKSADVFDIHISGEEEKKQI
VTKALSLLHDDQVIIMSGGSTNLVFAKLIPSDLKATIYTYSLPIAMQLSQHPNIDLIFIGGKMQKNAMVTIGMDVIQVVS
KIKADICFIGASSINIKQGLTEVGYEVSMVKKAMIEASDKVVSMFSSNKLNTKMPHVVCDLNQLDTIVTNL

Specific function: Repressor of the gat operon for galacticol transport and metabolism [H]

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789059, Length=232, Percent_Identity=31.4655172413793, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787063, Length=231, Percent_Identity=25.5411255411255, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1789519, Length=231, Percent_Identity=21.6450216450216, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787540, Length=226, Percent_Identity=26.9911504424779, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1789170, Length=233, Percent_Identity=23.6051502145923, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1788069, Length=233, Percent_Identity=24.4635193133047, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1789829, Length=217, Percent_Identity=27.6497695852535, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI87082344, Length=196, Percent_Identity=26.0204081632653, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI1790753, Length=234, Percent_Identity=22.2222222222222, Blast_Score=61, Evalue=5e-11,
Organism=Escherichia coli, GI1790635, Length=238, Percent_Identity=22.6890756302521, Blast_Score=60, Evalue=8e-11,
Organism=Escherichia coli, GI226510968, Length=233, Percent_Identity=25.3218884120172, Blast_Score=60, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 25557; Mature: 25557

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKAERHKYIMTKLVEEQKVVTTDLALALDLSEDTIRRDLNELDSKKLLEKVYGGAVQVK
CCCCHHHHHHHHHHHHHHHHEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCEEEEE
EKSADVFDIHISGEEEKKQIVTKALSLLHDDQVIIMSGGSTNLVFAKLIPSDLKATIYTY
ECCCCEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHEEEEEE
SLPIAMQLSQHPNIDLIFIGGKMQKNAMVTIGMDVIQVVSKIKADICFIGASSINIKQGL
ECCEEEEECCCCCEEEEEECCCCCCCEEEEECHHHHHHHHHHHHCEEEEECCCCCHHHHH
TEVGYEVSMVKKAMIEASDKVVSMFSSNKLNTKMPHVVCDLNQLDTIVTNL
HHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHCC
>Mature Secondary Structure
MLKAERHKYIMTKLVEEQKVVTTDLALALDLSEDTIRRDLNELDSKKLLEKVYGGAVQVK
CCCCHHHHHHHHHHHHHHHHEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCEEEEE
EKSADVFDIHISGEEEKKQIVTKALSLLHDDQVIIMSGGSTNLVFAKLIPSDLKATIYTY
ECCCCEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHEEEEEE
SLPIAMQLSQHPNIDLIFIGGKMQKNAMVTIGMDVIQVVSKIKADICFIGASSINIKQGL
ECCEEEEECCCCCEEEEEECCCCCCCEEEEECHHHHHHHHHHHHCEEEEECCCCCHHHHH
TEVGYEVSMVKKAMIEASDKVVSMFSSNKLNTKMPHVVCDLNQLDTIVTNL
HHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503; 7772602; 1661252 [H]