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The map label for this gene is rsmB [H]

Identifier: 146302508

GI number: 146302508

Start: 5776025

End: 5777239

Strand: Direct

Name: rsmB [H]

Synonym: Fjoh_4781

Alternate gene names: 146302508

Gene position: 5776025-5777239 (Clockwise)

Preceding gene: 146302507

Following gene: 146302511

Centisome position: 94.74

GC content: 34.65

Gene sequence:

>1215_bases
ATGAGATTACACAGAAATTTAGTTTATACTACCATCGACTCTTTAAATGCTATTTTCAATGAAGGAGAATATGCAGATAA
AGTGGTAGCCAGAGCATTAAAAAAAGACAAACGTTGGGGAAGTTCTGACAGGAAGTTTGTTGCTGAAACGATATATGAGA
TTGTTCGCTGGAAACGTTTATACGCAGAAATTGCCGAAGTAAAAGAACCTTACGACAGAGATAATTTATGGAGAATGTTC
GCGGTTTGGGCAGTTTTAAGAGGATATCCAATTCCTGATTGGAGACAATTAGAAGGAACTCCTGAAAGAAAAATCAAGGG
ACGTTTTGACGAGCTTTCGAAAGTTAGAGCTTTAAAGGAATCTATTCCGGACTGGATGGACGAATTGGGCGTAAAGGAAC
TTGGAGAAAAAATCTGGTCAAAAGAAATTACGGCTCAAAATCAGCCGGCTAAAGTTATTTTAAGAACAAATACTCTTAAA
GGAACTAAAGAAAGTCTTAGAAATACTTTGATGGATTTAAACATTGAAACAGAATATTTAAAAGATCAGCCGGAAGCTTT
AGTTTTAAAAGAAAGAGCAAATGTATTTTTAACAGACGCTTTTAAACAAGGACTTTTTGAGGTTCAGGATGCTAACTCAC
AATTAGTTGCCGGTTTCCTTGATGTAAAACCTGGAATGCGTGTTGTAGATACTTGTGCAGGAGCCGGAGGAAAAACATTA
CATATCGCTTCTTTAATGGAAAATAAAGGGCAGTTGATTGCAATGGATTTGTACGAAAGCAAACTAAAACAGTTAAAATT
AAGAGCCAAAAGAAATGGTGCTTTTAATATTGAATACCGTATTATTGACACTACAAAAGTGATCAAAAAGCTGCATGAAA
AAGCTGATCGTGTTTTAATCGATGCGCCTTGCAGCGGATTAGGTGTTTTAAAAAGAAATCCTGATTCTAAATGGAAATTA
CAGCCTGAATTTATCGATAACATTCGCAAAGTTCAAAGTGAAGTTTTAGAAAGCTATTCTAAAATTGTAAAACCAGGAGG
AAAATTAGTTTATGCAACTTGCTCTGTTTTACCATCTGAAAATCAGGAACAAGTAGAAAAATTCTTAAAAACAGAAATAG
GACAGCAGTTTACTTTTATTGAAGATCGTAAATTACTGGCTTCAGAATCTGGCTTTGACGGATTTTATATGGCACTTATG
GAAAGAAAAAAATAA

Upstream 100 bases:

>100_bases
GAGTGTTTTTTTGTTTTGAGAATGAAAGCTAAACAACAATCCCAATTAAAAATTTAACTTTCAACCAATTAATAGTACCT
TTGCAGCTCAAATATTAGAA

Downstream 100 bases:

>100_bases
GATTAAATTCCAATTTACTGGAAAATCCCAATACAACAAATCCCAAATTTCAATTGTAAAAATTAAAATTTGGGATTTAT
TTTTTATGTGGTTCTTGTCT

Product: Fmu (Sun) domain-containing protein

Products: NA

Alternate protein names: rRNA (cytosine-C(5)-)-methyltransferase rsmB [H]

Number of amino acids: Translated: 404; Mature: 404

Protein sequence:

>404_residues
MRLHRNLVYTTIDSLNAIFNEGEYADKVVARALKKDKRWGSSDRKFVAETIYEIVRWKRLYAEIAEVKEPYDRDNLWRMF
AVWAVLRGYPIPDWRQLEGTPERKIKGRFDELSKVRALKESIPDWMDELGVKELGEKIWSKEITAQNQPAKVILRTNTLK
GTKESLRNTLMDLNIETEYLKDQPEALVLKERANVFLTDAFKQGLFEVQDANSQLVAGFLDVKPGMRVVDTCAGAGGKTL
HIASLMENKGQLIAMDLYESKLKQLKLRAKRNGAFNIEYRIIDTTKVIKKLHEKADRVLIDAPCSGLGVLKRNPDSKWKL
QPEFIDNIRKVQSEVLESYSKIVKPGGKLVYATCSVLPSENQEQVEKFLKTEIGQQFTFIEDRKLLASESGFDGFYMALM
ERKK

Sequences:

>Translated_404_residues
MRLHRNLVYTTIDSLNAIFNEGEYADKVVARALKKDKRWGSSDRKFVAETIYEIVRWKRLYAEIAEVKEPYDRDNLWRMF
AVWAVLRGYPIPDWRQLEGTPERKIKGRFDELSKVRALKESIPDWMDELGVKELGEKIWSKEITAQNQPAKVILRTNTLK
GTKESLRNTLMDLNIETEYLKDQPEALVLKERANVFLTDAFKQGLFEVQDANSQLVAGFLDVKPGMRVVDTCAGAGGKTL
HIASLMENKGQLIAMDLYESKLKQLKLRAKRNGAFNIEYRIIDTTKVIKKLHEKADRVLIDAPCSGLGVLKRNPDSKWKL
QPEFIDNIRKVQSEVLESYSKIVKPGGKLVYATCSVLPSENQEQVEKFLKTEIGQQFTFIEDRKLLASESGFDGFYMALM
ERKK
>Mature_404_residues
MRLHRNLVYTTIDSLNAIFNEGEYADKVVARALKKDKRWGSSDRKFVAETIYEIVRWKRLYAEIAEVKEPYDRDNLWRMF
AVWAVLRGYPIPDWRQLEGTPERKIKGRFDELSKVRALKESIPDWMDELGVKELGEKIWSKEITAQNQPAKVILRTNTLK
GTKESLRNTLMDLNIETEYLKDQPEALVLKERANVFLTDAFKQGLFEVQDANSQLVAGFLDVKPGMRVVDTCAGAGGKTL
HIASLMENKGQLIAMDLYESKLKQLKLRAKRNGAFNIEYRIIDTTKVIKKLHEKADRVLIDAPCSGLGVLKRNPDSKWKL
QPEFIDNIRKVQSEVLESYSKIVKPGGKLVYATCSVLPSENQEQVEKFLKTEIGQQFTFIEDRKLLASESGFDGFYMALM
ERKK

Specific function: Unknown

COG id: COG0144

COG function: function code J; tRNA and rRNA cytosine-C5-methylases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family [H]

Homologues:

Organism=Homo sapiens, GI32698918, Length=222, Percent_Identity=32.8828828828829, Blast_Score=111, Evalue=1e-24,
Organism=Homo sapiens, GI76150625, Length=300, Percent_Identity=30, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI76150623, Length=300, Percent_Identity=30, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI270288816, Length=196, Percent_Identity=28.5714285714286, Blast_Score=83, Evalue=6e-16,
Organism=Homo sapiens, GI8922322, Length=196, Percent_Identity=28.5714285714286, Blast_Score=83, Evalue=6e-16,
Organism=Homo sapiens, GI23199998, Length=196, Percent_Identity=28.5714285714286, Blast_Score=83, Evalue=6e-16,
Organism=Homo sapiens, GI270288818, Length=196, Percent_Identity=28.5714285714286, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI301336155, Length=287, Percent_Identity=25.4355400696864, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI39995082, Length=202, Percent_Identity=26.2376237623762, Blast_Score=68, Evalue=2e-11,
Organism=Escherichia coli, GI2367212, Length=288, Percent_Identity=33.3333333333333, Blast_Score=135, Evalue=5e-33,
Organism=Escherichia coli, GI87081985, Length=219, Percent_Identity=31.9634703196347, Blast_Score=106, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17536757, Length=233, Percent_Identity=31.7596566523605, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI115534021, Length=221, Percent_Identity=31.6742081447964, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI71998419, Length=221, Percent_Identity=31.6742081447964, Blast_Score=87, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6324268, Length=229, Percent_Identity=30.5676855895196, Blast_Score=91, Evalue=4e-19,
Organism=Saccharomyces cerevisiae, GI6319447, Length=210, Percent_Identity=28.5714285714286, Blast_Score=70, Evalue=8e-13,
Organism=Drosophila melanogaster, GI22024126, Length=243, Percent_Identity=31.2757201646091, Blast_Score=102, Evalue=5e-22,
Organism=Drosophila melanogaster, GI21355201, Length=202, Percent_Identity=30.6930693069307, Blast_Score=87, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24668781, Length=164, Percent_Identity=31.7073170731707, Blast_Score=86, Evalue=4e-17,
Organism=Drosophila melanogaster, GI21356513, Length=164, Percent_Identity=31.7073170731707, Blast_Score=86, Evalue=6e-17,
Organism=Drosophila melanogaster, GI19920494, Length=183, Percent_Identity=32.2404371584699, Blast_Score=77, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001678
- InterPro:   IPR018314
- InterPro:   IPR006027
- InterPro:   IPR004573 [H]

Pfam domain/function: PF01189 Nol1_Nop2_Fmu; PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 46474; Mature: 46474

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLHRNLVYTTIDSLNAIFNEGEYADKVVARALKKDKRWGSSDRKFVAETIYEIVRWKRL
CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
YAEIAEVKEPYDRDNLWRMFAVWAVLRGYPIPDWRQLEGTPERKIKGRFDELSKVRALKE
HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCHHHCCHHHHHHHHHHHHH
SIPDWMDELGVKELGEKIWSKEITAQNQPAKVILRTNTLKGTKESLRNTLMDLNIETEYL
HHHHHHHHHCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCHHHH
KDQPEALVLKERANVFLTDAFKQGLFEVQDANSQLVAGFLDVKPGMRVVDTCAGAGGKTL
HCCCHHEEEHHHCCEEEEHHHHHCCHHHCCCCCHHEEHHHHCCCCHHHHHHHCCCCCCEE
HIASLMENKGQLIAMDLYESKLKQLKLRAKRNGAFNIEYRIIDTTKVIKKLHEKADRVLI
EHHHHHHCCCCEEEEHHHHHHHHHHHHHHHCCCEEEEEEEEECHHHHHHHHHHHHCCEEE
DAPCSGLGVLKRNPDSKWKLQPEFIDNIRKVQSEVLESYSKIVKPGGKLVYATCSVLPSE
ECCCCCCCCEECCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCC
NQEQVEKFLKTEIGQQFTFIEDRKLLASESGFDGFYMALMERKK
CHHHHHHHHHHHHCCCEEEHHHHHHHHCCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MRLHRNLVYTTIDSLNAIFNEGEYADKVVARALKKDKRWGSSDRKFVAETIYEIVRWKRL
CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
YAEIAEVKEPYDRDNLWRMFAVWAVLRGYPIPDWRQLEGTPERKIKGRFDELSKVRALKE
HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCHHHCCHHHHHHHHHHHHH
SIPDWMDELGVKELGEKIWSKEITAQNQPAKVILRTNTLKGTKESLRNTLMDLNIETEYL
HHHHHHHHHCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCHHHH
KDQPEALVLKERANVFLTDAFKQGLFEVQDANSQLVAGFLDVKPGMRVVDTCAGAGGKTL
HCCCHHEEEHHHCCEEEEHHHHHCCHHHCCCCCHHEEHHHHCCCCHHHHHHHCCCCCCEE
HIASLMENKGQLIAMDLYESKLKQLKLRAKRNGAFNIEYRIIDTTKVIKKLHEKADRVLI
EHHHHHHCCCCEEEEHHHHHHHHHHHHHHHCCCEEEEEEEEECHHHHHHHHHHHHCCEEE
DAPCSGLGVLKRNPDSKWKLQPEFIDNIRKVQSEVLESYSKIVKPGGKLVYATCSVLPSE
ECCCCCCCCEECCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCC
NQEQVEKFLKTEIGQQFTFIEDRKLLASESGFDGFYMALMERKK
CHHHHHHHHHHHHCCCEEEHHHHHHHHCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]