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The map label for this gene is sodC2 [H]

Identifier: 146302488

GI number: 146302488

Start: 5757835

End: 5758374

Strand: Direct

Name: sodC2 [H]

Synonym: Fjoh_4761

Alternate gene names: 146302488

Gene position: 5757835-5758374 (Clockwise)

Preceding gene: 146302484

Following gene: 146302489

Centisome position: 94.44

GC content: 39.26

Gene sequence:

>540_bases
ATGCCCGTATTTATGAAAAAACTAATCGTATCTTTCGCTATAATTACAGCTTTAATAGTTGGCTGTAAGACAAATACAAA
ATCAAACGATGCAAAAACCATAACGGTTGCCTTAGAGCCAAAAAGTAACAGTAAAGTAGCCGGAACTGCTGTTTTTACTG
AAAAAAACGGCAAGGTTACCTTTACTGCAAAAATGACTGGACTAGAGCCGGGAGTTCATGCAATACATATTCACGAAAAA
GCTGATTGCAGCTCTGCTGATGGAAGTTCTGCAGGCGGACACTGGAATCCTACTTTCAAAAAACATGGAAAATGGGGTGT
TGGAGAATACCACAAAGGTGATATTGGAAACTTTACTGCAGATGCAAATGGTAACGGATCTATCACATTTACTACAGACG
AATGGTGCATAGGATGTGAAGATGAAACTAAAAATGTACTTAACAAAGGTTTAATTGTTCATCAGGGAACTGATGATTTT
ACTACTCAGCCAACCGGAAATGCCGGCGGACGTGTAGCCTGTGCAGGGATCATTAAATAA

Upstream 100 bases:

>100_bases
ATCAATCTTAAATTATAAAGTATAGTTTGACTTTTTTTTAACTTTTAGAGTTAAACTATTCCGTTATTTTATGTTAAATT
TACTTAATCTTTAATTTAAA

Downstream 100 bases:

>100_bases
GCAAAAATTTACAATAACCACTATTTTCACAAAAATCTAGTGGTTATTTTATTTTAATATATTCTGTAACAAGAAAAAGA
TATAGCTTTGCAGCTATAAA

Product: superoxide dismutase, copper/zinc binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 178

Protein sequence:

>179_residues
MPVFMKKLIVSFAIITALIVGCKTNTKSNDAKTITVALEPKSNSKVAGTAVFTEKNGKVTFTAKMTGLEPGVHAIHIHEK
ADCSSADGSSAGGHWNPTFKKHGKWGVGEYHKGDIGNFTADANGNGSITFTTDEWCIGCEDETKNVLNKGLIVHQGTDDF
TTQPTGNAGGRVACAGIIK

Sequences:

>Translated_179_residues
MPVFMKKLIVSFAIITALIVGCKTNTKSNDAKTITVALEPKSNSKVAGTAVFTEKNGKVTFTAKMTGLEPGVHAIHIHEK
ADCSSADGSSAGGHWNPTFKKHGKWGVGEYHKGDIGNFTADANGNGSITFTTDEWCIGCEDETKNVLNKGLIVHQGTDDF
TTQPTGNAGGRVACAGIIK
>Mature_178_residues
PVFMKKLIVSFAIITALIVGCKTNTKSNDAKTITVALEPKSNSKVAGTAVFTEKNGKVTFTAKMTGLEPGVHAIHIHEKA
DCSSADGSSAGGHWNPTFKKHGKWGVGEYHKGDIGNFTADANGNGSITFTTDEWCIGCEDETKNVLNKGLIVHQGTDDFT
TQPTGNAGGRVACAGIIK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI4507149, Length=145, Percent_Identity=34.4827586206897, Blast_Score=73, Evalue=1e-13,
Organism=Homo sapiens, GI4826665, Length=127, Percent_Identity=34.6456692913386, Blast_Score=72, Evalue=2e-13,
Organism=Escherichia coli, GI1787934, Length=186, Percent_Identity=33.8709677419355, Blast_Score=65, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17554806, Length=181, Percent_Identity=29.8342541436464, Blast_Score=72, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71981876, Length=145, Percent_Identity=35.1724137931034, Blast_Score=67, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI71981879, Length=145, Percent_Identity=35.1724137931034, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17537871, Length=159, Percent_Identity=35.2201257861635, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI116007680, Length=182, Percent_Identity=29.6703296703297, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI45551081, Length=182, Percent_Identity=29.6703296703297, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24652737, Length=182, Percent_Identity=29.6703296703297, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI85725006, Length=182, Percent_Identity=29.6703296703297, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI281363087, Length=119, Percent_Identity=36.1344537815126, Blast_Score=68, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24652342, Length=119, Percent_Identity=36.1344537815126, Blast_Score=68, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018152
- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 18853; Mature: 18722

Theoretical pI: Translated: 8.24; Mature: 8.24

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00332 SOD_CU_ZN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVFMKKLIVSFAIITALIVGCKTNTKSNDAKTITVALEPKSNSKVAGTAVFTEKNGKVT
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEEECCCEEE
FTAKMTGLEPGVHAIHIHEKADCSSADGSSAGGHWNPTFKKHGKWGVGEYHKGDIGNFTA
EEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCEEE
DANGNGSITFTTDEWCIGCEDETKNVLNKGLIVHQGTDDFTTQPTGNAGGRVACAGIIK
CCCCCCCEEEECCCEEECCCHHHHHHHHCCEEEECCCCCCCCCCCCCCCCEEEEEEECC
>Mature Secondary Structure 
PVFMKKLIVSFAIITALIVGCKTNTKSNDAKTITVALEPKSNSKVAGTAVFTEKNGKVT
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEEECCCEEE
FTAKMTGLEPGVHAIHIHEKADCSSADGSSAGGHWNPTFKKHGKWGVGEYHKGDIGNFTA
EEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCEEE
DANGNGSITFTTDEWCIGCEDETKNVLNKGLIVHQGTDDFTTQPTGNAGGRVACAGIIK
CCCCCCCEEEECCCEEECCCHHHHHHHHCCEEEECCCCCCCCCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]