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The map label for this gene is ypfJ [H]

Identifier: 146302443

GI number: 146302443

Start: 5695447

End: 5696292

Strand: Direct

Name: ypfJ [H]

Synonym: Fjoh_4716

Alternate gene names: 146302443

Gene position: 5695447-5696292 (Clockwise)

Preceding gene: 146302442

Following gene: 146302447

Centisome position: 93.42

GC content: 39.13

Gene sequence:

>846_bases
ATGAAATGGCAAGGCAGAAGACAAAGTGATAACGTAGAAGACCGAAGATCGATTTCTGGCGGAAAAGTTGCTGTTGGAGG
TGGTATTATTGGAATTATCATTTTATTACTAAATGTTTTTGGAGGCGAAACCGGCCAGCAGATAGCACCAATTTTGGAGC
AGATGCAAGGCGGACAAACACAAACTGAAGCTGCTGCTCCATTGAGCAAAGAAGATGAAGAAATGGGACAATTTGTAAAA
GTTGTTCTGGCCGATAATGAAGACATTTGGGGAAAAATATTTGCAGAACATGGAATGACCTATAAAAACCCAAAATTAGT
GCTTTTTAGAGGCTCTGTTCAAACTTCTTGTGGTGGTGCTTCATCAGCATCCGGACCATTTTATTGCCCCGCAGATCAAA
AAGTATATATGGACTTAGGTTTCTTTGAAGAACTTAAAACAAAATTTGGTGCAAAAGGAGGCGATTTTGCAATTGCCTAT
GTAATCGCACACGAAATTGGTCATCATGTGCAGACACTTTTAGGAACATCTGCCAAAATGCACAGAGATCAGCAAGGAAA
AAGTCAGGCTGCAGCGAATAAACTTTCGGTTGCTTTAGAATTACAAGCCGATTTTTATGCCGGAGTCTGGGCACATTATA
ATGAGAAAAATTTAGATGAAGGTGATATCGAAGAAGCATTAAGTGCAGCAAATGCTGTTGGTGATGATGCTATACAAAGT
AAAATGCAGGGACAAATTGTTCCCGACTCTTTTACTCACGGAACATCTGAACAAAGAATGTACTGGTTTAAAAAAGGCTT
CAAAACTGGAGATATTAAACAAGGAACTACTTTTGAGGAAATCTGA

Upstream 100 bases:

>100_bases
GAAATAATTCAAACTAAATTCTCGTTTAATTATAAGTTTTTCCTAAAAATTACATAAATTCGTACAATAAAAAACATAAA
AAGCTTAAAAAGAATATACT

Downstream 100 bases:

>100_bases
TAATACATAAACCAAATTATAATAACCGCGAAAAGCATGATTTAACCGTCATGCTTTTTTTATTTCCTCTTAACGACAGG
ACAATGGTTCAAAAAATTAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MKWQGRRQSDNVEDRRSISGGKVAVGGGIIGIIILLLNVFGGETGQQIAPILEQMQGGQTQTEAAAPLSKEDEEMGQFVK
VVLADNEDIWGKIFAEHGMTYKNPKLVLFRGSVQTSCGGASSASGPFYCPADQKVYMDLGFFEELKTKFGAKGGDFAIAY
VIAHEIGHHVQTLLGTSAKMHRDQQGKSQAAANKLSVALELQADFYAGVWAHYNEKNLDEGDIEEALSAANAVGDDAIQS
KMQGQIVPDSFTHGTSEQRMYWFKKGFKTGDIKQGTTFEEI

Sequences:

>Translated_281_residues
MKWQGRRQSDNVEDRRSISGGKVAVGGGIIGIIILLLNVFGGETGQQIAPILEQMQGGQTQTEAAAPLSKEDEEMGQFVK
VVLADNEDIWGKIFAEHGMTYKNPKLVLFRGSVQTSCGGASSASGPFYCPADQKVYMDLGFFEELKTKFGAKGGDFAIAY
VIAHEIGHHVQTLLGTSAKMHRDQQGKSQAAANKLSVALELQADFYAGVWAHYNEKNLDEGDIEEALSAANAVGDDAIQS
KMQGQIVPDSFTHGTSEQRMYWFKKGFKTGDIKQGTTFEEI
>Mature_281_residues
MKWQGRRQSDNVEDRRSISGGKVAVGGGIIGIIILLLNVFGGETGQQIAPILEQMQGGQTQTEAAAPLSKEDEEMGQFVK
VVLADNEDIWGKIFAEHGMTYKNPKLVLFRGSVQTSCGGASSASGPFYCPADQKVYMDLGFFEELKTKFGAKGGDFAIAY
VIAHEIGHHVQTLLGTSAKMHRDQQGKSQAAANKLSVALELQADFYAGVWAHYNEKNLDEGDIEEALSAANAVGDDAIQS
KMQGQIVPDSFTHGTSEQRMYWFKKGFKTGDIKQGTTFEEI

Specific function: Unknown

COG id: COG2321

COG function: function code R; Predicted metalloprotease

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788819, Length=298, Percent_Identity=47.6510067114094, Blast_Score=279, Evalue=1e-76,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007343 [H]

Pfam domain/function: PF04228 Zn_peptidase [H]

EC number: NA

Molecular weight: Translated: 30562; Mature: 30562

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKWQGRRQSDNVEDRRSISGGKVAVGGGIIGIIILLLNVFGGETGQQIAPILEQMQGGQT
CCCCCCCCCCCCHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCC
QTEAAAPLSKEDEEMGQFVKVVLADNEDIWGKIFAEHGMTYKNPKLVLFRGSVQTSCGGA
CHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCC
SSASGPFYCPADQKVYMDLGFFEELKTKFGAKGGDFAIAYVIAHEIGHHVQTLLGTSAKM
CCCCCCEECCCCCEEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHH
HRDQQGKSQAAANKLSVALELQADFYAGVWAHYNEKNLDEGDIEEALSAANAVGDDAIQS
HHHHCCHHHHHHHHEEEEEEECCCHHHHHHEECCCCCCCHHHHHHHHHHHHHCCHHHHHH
KMQGQIVPDSFTHGTSEQRMYWFKKGFKTGDIKQGTTFEEI
HHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKWQGRRQSDNVEDRRSISGGKVAVGGGIIGIIILLLNVFGGETGQQIAPILEQMQGGQT
CCCCCCCCCCCCHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCC
QTEAAAPLSKEDEEMGQFVKVVLADNEDIWGKIFAEHGMTYKNPKLVLFRGSVQTSCGGA
CHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCC
SSASGPFYCPADQKVYMDLGFFEELKTKFGAKGGDFAIAYVIAHEIGHHVQTLLGTSAKM
CCCCCCEECCCCCEEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHH
HRDQQGKSQAAANKLSVALELQADFYAGVWAHYNEKNLDEGDIEEALSAANAVGDDAIQS
HHHHCCHHHHHHHHEEEEEEECCCHHHHHHEECCCCCCCHHHHHHHHHHHHHCCHHHHHH
KMQGQIVPDSFTHGTSEQRMYWFKKGFKTGDIKQGTTFEEI
HHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]