Click here to switch to the map view.

The map label for this gene is ydjI [H]

Identifier: 146302404

GI number: 146302404

Start: 5660032

End: 5660985

Strand: Direct

Name: ydjI [H]

Synonym: Fjoh_4677

Alternate gene names: 146302404

Gene position: 5660032-5660985 (Clockwise)

Preceding gene: 146302403

Following gene: 146302405

Centisome position: 92.84

GC content: 36.16

Gene sequence:

>954_bases
ATGAAACTACCTTTTATAGAAATAATCGAAGCCGCAACCAGTGATCCTAATTTACTGATGTGGAAATTTTATGATGAAGA
CAAAGAAATCAAAAACGGAGCAAAACTAACCGTTCGTGAAAGTCAGCACGTTATGCTTTTAAATGAAGGCCAGCTTGCAG
ATGTTTTTTCTCCCGGACTTCATACTTTATCTACAGAAAACATTCCTATTTTAAGTAAATTAAAAGGCTGGAAATACGGT
TTCGAAAGTCCGTTTAAAGTCGATGTTTACTTTTTTAACACACACCAATTCATCAATAATAAATGGGGAACTCCTGCTCC
TATTTTGATGAACGACCCTCAGTTTGGGCAAATCAGAATCCGCGCTTTCGGAAGTTTTGATATTAAAATTGCCGATCCTG
CTAAATTCTTCCGCCAATATGCCGGAACTTACAAACAGCTTACCATTTTCGAATTGCAAAATCAGTTACGAGATTTTGTG
GCACCAAAATTTGGAGAAGTTTTAGCAAACGAAAATATTACCGTTACTGACGTTGCTGGAAATATTACACAATTAGGAAA
AAAAATCGAGCCTTATCTTAAACCCTATTTTGAGCAGTTAGGTATCGAGTTAACCCAATTTGTAATTACAAGTGTAACCT
TGCCGGAAGAAGTTACTGCACATTACGATAAAATCACCAATATGAATATGGTAACCGATATGGATAAATTTACCAAATTC
AATACCGCAACGGCAATTGGCGACAAAGGAACCGCGCTTCACGATGCAACACAAAATGCCGTGACCATGGGAATTCTTTT
AAACCAGTTACAGCAAAATAAAGAAACCCCAAAGCAGGAAACAGCAGACGATTTAACGTCTAAACTTCAAAAACTAAAAT
CTTTATTTGACGCTGGTTTAATTGACGAAGATGAATTCAAAAACAAGAAAACTGAACTATTAAGCCAATTGTAA

Upstream 100 bases:

>100_bases
TCTTAAAATTTAACAAACAAAAAGTTGTTAAAAACTTGATATAAAAAAGTAATACAGATGTCTTATAATTCTTATTTTTA
GCTCTTCTAAATAAGAATTC

Downstream 100 bases:

>100_bases
TGGAAGAAAAAAAAGTCAATTCGTTTTTGAGCAGACTCAAAGAAAATGCGCAGAAACAAACCAATTATGGAGGTGAAATG
GAAATTACCGAAGCCAAAAT

Product: putative virion core protein (lumpy skin disease virus)-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MKLPFIEIIEAATSDPNLLMWKFYDEDKEIKNGAKLTVRESQHVMLLNEGQLADVFSPGLHTLSTENIPILSKLKGWKYG
FESPFKVDVYFFNTHQFINNKWGTPAPILMNDPQFGQIRIRAFGSFDIKIADPAKFFRQYAGTYKQLTIFELQNQLRDFV
APKFGEVLANENITVTDVAGNITQLGKKIEPYLKPYFEQLGIELTQFVITSVTLPEEVTAHYDKITNMNMVTDMDKFTKF
NTATAIGDKGTALHDATQNAVTMGILLNQLQQNKETPKQETADDLTSKLQKLKSLFDAGLIDEDEFKNKKTELLSQL

Sequences:

>Translated_317_residues
MKLPFIEIIEAATSDPNLLMWKFYDEDKEIKNGAKLTVRESQHVMLLNEGQLADVFSPGLHTLSTENIPILSKLKGWKYG
FESPFKVDVYFFNTHQFINNKWGTPAPILMNDPQFGQIRIRAFGSFDIKIADPAKFFRQYAGTYKQLTIFELQNQLRDFV
APKFGEVLANENITVTDVAGNITQLGKKIEPYLKPYFEQLGIELTQFVITSVTLPEEVTAHYDKITNMNMVTDMDKFTKF
NTATAIGDKGTALHDATQNAVTMGILLNQLQQNKETPKQETADDLTSKLQKLKSLFDAGLIDEDEFKNKKTELLSQL
>Mature_317_residues
MKLPFIEIIEAATSDPNLLMWKFYDEDKEIKNGAKLTVRESQHVMLLNEGQLADVFSPGLHTLSTENIPILSKLKGWKYG
FESPFKVDVYFFNTHQFINNKWGTPAPILMNDPQFGQIRIRAFGSFDIKIADPAKFFRQYAGTYKQLTIFELQNQLRDFV
APKFGEVLANENITVTDVAGNITQLGKKIEPYLKPYFEQLGIELTQFVITSVTLPEEVTAHYDKITNMNMVTDMDKFTKF
NTATAIGDKGTALHDATQNAVTMGILLNQLQQNKETPKQETADDLTSKLQKLKSLFDAGLIDEDEFKNKKTELLSQL

Specific function: Unknown

COG id: COG4260

COG function: function code S; Putative virion core protein (lumpy skin disease virus)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 36020; Mature: 36020

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLPFIEIIEAATSDPNLLMWKFYDEDKEIKNGAKLTVRESQHVMLLNEGQLADVFSPGL
CCCCHHHHHHHCCCCCCEEEEEEECCCHHHCCCCEEEEECCCEEEEEECCCCHHHHCCCC
HTLSTENIPILSKLKGWKYGFESPFKVDVYFFNTHQFINNKWGTPAPILMNDPQFGQIRI
CCCCCCCCCHHHHCCCCCCCCCCCEEEEEEEEECHHHHCCCCCCCCCEEECCCCCCEEEE
RAFGSFDIKIADPAKFFRQYAGTYKQLTIFELQNQLRDFVAPKFGEVLANENITVTDVAG
EEECCEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCEEEEECCC
NITQLGKKIEPYLKPYFEQLGIELTQFVITSVTLPEEVTAHYDKITNMNMVTDMDKFTKF
CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHH
NTATAIGDKGTALHDATQNAVTMGILLNQLQQNKETPKQETADDLTSKLQKLKSLFDAGL
CCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC
IDEDEFKNKKTELLSQL
CCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MKLPFIEIIEAATSDPNLLMWKFYDEDKEIKNGAKLTVRESQHVMLLNEGQLADVFSPGL
CCCCHHHHHHHCCCCCCEEEEEEECCCHHHCCCCEEEEECCCEEEEEECCCCHHHHCCCC
HTLSTENIPILSKLKGWKYGFESPFKVDVYFFNTHQFINNKWGTPAPILMNDPQFGQIRI
CCCCCCCCCHHHHCCCCCCCCCCCEEEEEEEEECHHHHCCCCCCCCCEEECCCCCCEEEE
RAFGSFDIKIADPAKFFRQYAGTYKQLTIFELQNQLRDFVAPKFGEVLANENITVTDVAG
EEECCEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCEEEEECCC
NITQLGKKIEPYLKPYFEQLGIELTQFVITSVTLPEEVTAHYDKITNMNMVTDMDKFTKF
CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHH
NTATAIGDKGTALHDATQNAVTMGILLNQLQQNKETPKQETADDLTSKLQKLKSLFDAGL
CCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC
IDEDEFKNKKTELLSQL
CCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9455482; 9384377 [H]