Click here to switch to the map view.

The map label for this gene is 146302229

Identifier: 146302229

GI number: 146302229

Start: 5435225

End: 5435863

Strand: Reverse

Name: 146302229

Synonym: Fjoh_4502

Alternate gene names: NA

Gene position: 5435863-5435225 (Counterclockwise)

Preceding gene: 146302231

Following gene: 146302228

Centisome position: 89.16

GC content: 33.18

Gene sequence:

>639_bases
ATGAATACCATTTTAATTGGAATTATAGTAGCCAATGTACTTATAAGCTATAAAGGTTTTAATGATTATGCTTTTTTTAG
AAAATTTGAATTTCATGTAGGAAGTATTCGCGCCGGCGAACAGATTAGAATGCTTACATCTGGATTTTTGCATGCAGATA
TGATGCATTTATTTTTTAATATGCTTACACTTTGGTTTTTTGCGCCTGTTGTTATTGATTCGCTCGGAAATTTTTCTTTT
GTTTTGGTTTATTTCGGAAGTCTGATTTTTGGAAGCCTGCTCACTATGCTGTTTCATAAAAATGACTACAGCTATCGTGC
AGTTGGAGCTTCTGGAGCAGTTACCGGAGTTTTGTATTCGGCTATATTACTGCATCCGGATATGATGCTGGGAATATTTT
TTGTTATTCCAATACCAGCCTATCTTTTTGGAATTCTATATTTATTGTATTCAATTTATGGAATGAAAGCCAAAAATGAC
AATATTGGTCATACGGCGCATTTTGGAGGCGCAGTTGGCGGATACTTAATTACTTTGATAAAAGTACCTTCATTAATTGT
AGATCATAGTTTGATGACCATTTTACTGGCAATTCCAATTATTGTACTTTTTGTATTGGCAAAATCAGGAAAAATATAA

Upstream 100 bases:

>100_bases
TACAAATATAAAGCAAAAATGAGAAATGATCGATATTTTGGATTCTCATCAAGATATGTTCGATATTGACTATATTTACA
TTTCACATTAAATATTATTT

Downstream 100 bases:

>100_bases
TGCTGGCATAACTTTTGAAATGCCTTTATCAAATAACTTAAATATCACAAAAAATGAAAAAATTAGTATTATTTTTAACA
ATCATGTTTATGACTATGTC

Product: rhomboid family protein

Products: NA

Alternate protein names: Rhomboid-Like Protein; Peptidase; Transmembrane Rhomboid Family Protein; S54 Family Peptidase; Cytoplasmic Membrane Protein; Integral Membrane Protein; Intramembrane Protease

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MNTILIGIIVANVLISYKGFNDYAFFRKFEFHVGSIRAGEQIRMLTSGFLHADMMHLFFNMLTLWFFAPVVIDSLGNFSF
VLVYFGSLIFGSLLTMLFHKNDYSYRAVGASGAVTGVLYSAILLHPDMMLGIFFVIPIPAYLFGILYLLYSIYGMKAKND
NIGHTAHFGGAVGGYLITLIKVPSLIVDHSLMTILLAIPIIVLFVLAKSGKI

Sequences:

>Translated_212_residues
MNTILIGIIVANVLISYKGFNDYAFFRKFEFHVGSIRAGEQIRMLTSGFLHADMMHLFFNMLTLWFFAPVVIDSLGNFSF
VLVYFGSLIFGSLLTMLFHKNDYSYRAVGASGAVTGVLYSAILLHPDMMLGIFFVIPIPAYLFGILYLLYSIYGMKAKND
NIGHTAHFGGAVGGYLITLIKVPSLIVDHSLMTILLAIPIIVLFVLAKSGKI
>Mature_212_residues
MNTILIGIIVANVLISYKGFNDYAFFRKFEFHVGSIRAGEQIRMLTSGFLHADMMHLFFNMLTLWFFAPVVIDSLGNFSF
VLVYFGSLIFGSLLTMLFHKNDYSYRAVGASGAVTGVLYSAILLHPDMMLGIFFVIPIPAYLFGILYLLYSIYGMKAKND
NIGHTAHFGGAVGGYLITLIKVPSLIVDHSLMTILLAIPIIVLFVLAKSGKI

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23509; Mature: 23509

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTILIGIIVANVLISYKGFNDYAFFRKFEFHVGSIRAGEQIRMLTSGFLHADMMHLFFN
CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
MLTLWFFAPVVIDSLGNFSFVLVYFGSLIFGSLLTMLFHKNDYSYRAVGASGAVTGVLYS
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHH
AILLHPDMMLGIFFVIPIPAYLFGILYLLYSIYGMKAKNDNIGHTAHFGGAVGGYLITLI
HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCHHHHHHHHHH
KVPSLIVDHSLMTILLAIPIIVLFVLAKSGKI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNTILIGIIVANVLISYKGFNDYAFFRKFEFHVGSIRAGEQIRMLTSGFLHADMMHLFFN
CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
MLTLWFFAPVVIDSLGNFSFVLVYFGSLIFGSLLTMLFHKNDYSYRAVGASGAVTGVLYS
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHH
AILLHPDMMLGIFFVIPIPAYLFGILYLLYSIYGMKAKNDNIGHTAHFGGAVGGYLITLI
HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCHHHHHHHHHH
KVPSLIVDHSLMTILLAIPIIVLFVLAKSGKI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA