| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146302205
Identifier: 146302205
GI number: 146302205
Start: 5399136
End: 5399879
Strand: Reverse
Name: 146302205
Synonym: Fjoh_4476
Alternate gene names: NA
Gene position: 5399879-5399136 (Counterclockwise)
Preceding gene: 146302206
Following gene: 146302204
Centisome position: 88.57
GC content: 28.63
Gene sequence:
>744_bases ATGTCTCAAACAAGATTAAGAATATTTGCAGGCCCAAACGGCTCAGGAAAAAGCACTCTGTTTGATTCTTTTTCAAAAAA ATACAATTCGGGAGTGTTTCTTAACGCTGATTTAATTGAAAAAGAATTAGCAAGTAACGGATTTATTGATTTAACTGAAT ATAATTTAAATTTAACGCAAGCTGATTTAGACGAATTTTTAAAAACAGAAAGAGCAGTTTCGTTAATAAAAAAATCTATT GAAGATAATCATAAAATAGATTTTTCTTTAAAAGAAAATGTAATAGTTGATGTAGATAAGGAAACTCACAGTTATGAGGG CGCCCTAATAAGTGCTTTTTTAAGACATCATTTGCAGGAAAGCAGAATTGATTTTTGCTTTGAAACAGTAATGAGCCATC CTTCAAAAATTGAAGAGATAAAGGAAGCAAAACAAAAGGGCTATAAAACATATTTATATTTTATTTGTATTGATGATCCA GAAGTAAATGTTTCTCGAGTTGAAAATAGAGTAAGCAAAGGAGGACATAATGTTGCTCCAGAAAAAATTTCCAGTAGATA TTATAATACATTGAGTAATCTGCTTCCCATGATTGAAAATGTGGATAAATGTTATCTATTTGATAATTCAAGTGAAGAAT ATAAATTGATTGCAAAAATTTCAGAAAATAAGTTATCATTGGAAATTGGACCTTCTGAACTCCCTAATTGGTTCATTGAT TATGTACTTAAATATTACATATAA
Upstream 100 bases:
>100_bases ATTAATCCCGATAAGACGATAAAAGTAATAAGAAAAATATCAAAACCTACTATTGACATATCATCTTTAAAAAAAGGAAT GATTTTAGAAAGAAAGTAGT
Downstream 100 bases:
>100_bases ATAAAATTCGATAGCCGCGAAGTTTTTTACATTTTCCTTCTAATCGTATAACTGACATACAAACGAGCATAGTATGAAAA ACTAATTGTGCCGACCGGCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 247; Mature: 246
Protein sequence:
>247_residues MSQTRLRIFAGPNGSGKSTLFDSFSKKYNSGVFLNADLIEKELASNGFIDLTEYNLNLTQADLDEFLKTERAVSLIKKSI EDNHKIDFSLKENVIVDVDKETHSYEGALISAFLRHHLQESRIDFCFETVMSHPSKIEEIKEAKQKGYKTYLYFICIDDP EVNVSRVENRVSKGGHNVAPEKISSRYYNTLSNLLPMIENVDKCYLFDNSSEEYKLIAKISENKLSLEIGPSELPNWFID YVLKYYI
Sequences:
>Translated_247_residues MSQTRLRIFAGPNGSGKSTLFDSFSKKYNSGVFLNADLIEKELASNGFIDLTEYNLNLTQADLDEFLKTERAVSLIKKSI EDNHKIDFSLKENVIVDVDKETHSYEGALISAFLRHHLQESRIDFCFETVMSHPSKIEEIKEAKQKGYKTYLYFICIDDP EVNVSRVENRVSKGGHNVAPEKISSRYYNTLSNLLPMIENVDKCYLFDNSSEEYKLIAKISENKLSLEIGPSELPNWFID YVLKYYI >Mature_246_residues SQTRLRIFAGPNGSGKSTLFDSFSKKYNSGVFLNADLIEKELASNGFIDLTEYNLNLTQADLDEFLKTERAVSLIKKSIE DNHKIDFSLKENVIVDVDKETHSYEGALISAFLRHHLQESRIDFCFETVMSHPSKIEEIKEAKQKGYKTYLYFICIDDPE VNVSRVENRVSKGGHNVAPEKISSRYYNTLSNLLPMIENVDKCYLFDNSSEEYKLIAKISENKLSLEIGPSELPNWFIDY VLKYYI
Specific function: Unknown
COG id: COG4185
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28411; Mature: 28280
Theoretical pI: Translated: 5.23; Mature: 5.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQTRLRIFAGPNGSGKSTLFDSFSKKYNSGVFLNADLIEKELASNGFIDLTEYNLNLTQ CCCCEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHCCCCEEEEECCCCCCH ADLDEFLKTERAVSLIKKSIEDNHKIDFSLKENVIVDVDKETHSYEGALISAFLRHHLQE HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHHH SRIDFCFETVMSHPSKIEEIKEAKQKGYKTYLYFICIDDPEVNVSRVENRVSKGGHNVAP HHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHCCCCCCCH EKISSRYYNTLSNLLPMIENVDKCYLFDNSSEEYKLIAKISENKLSLEIGPSELPNWFID HHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEECCCEEEEEECHHHCHHHHHH YVLKYYI HHHHHCC >Mature Secondary Structure SQTRLRIFAGPNGSGKSTLFDSFSKKYNSGVFLNADLIEKELASNGFIDLTEYNLNLTQ CCCEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHCCCCEEEEECCCCCCH ADLDEFLKTERAVSLIKKSIEDNHKIDFSLKENVIVDVDKETHSYEGALISAFLRHHLQE HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHHH SRIDFCFETVMSHPSKIEEIKEAKQKGYKTYLYFICIDDPEVNVSRVENRVSKGGHNVAP HHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHCCCCCCCH EKISSRYYNTLSNLLPMIENVDKCYLFDNSSEEYKLIAKISENKLSLEIGPSELPNWFID HHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEECCCEEEEEECHHHCHHHHHH YVLKYYI HHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA