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The map label for this gene is yfjY [C]

Identifier: 146302122

GI number: 146302122

Start: 5293317

End: 5293787

Strand: Direct

Name: yfjY [C]

Synonym: Fjoh_4387

Alternate gene names: 146302122

Gene position: 5293317-5293787 (Clockwise)

Preceding gene: 146302121

Following gene: 146302123

Centisome position: 86.82

GC content: 46.5

Gene sequence:

>471_bases
ATGAAAAATCAACATCAAAACACAGACTGGCAGAAAGTATCAGAAATAGAACTGATCTATAAAACCAAAGTAAAAAGTAC
TGAAAGACCGTGTATCACTTCTTCCAGAGATGCTTACCGAATACTGCTCGACAGCTGGGATCCCGGAAAAATAGAATTCT
TTGAGCAGTTCAAAGTGCTGCTGCTCAGCCAGTCCAACAGGGTACTGGGAATCTACGAGGTTTCCTCAGGAGGCATCTCG
GGAACTCTGGTTGATATGCGCATGCTTTTCGCGGCAGCCCTGAAAGCTGCCGCCGTCGGGATCATCATCACCCACAACCA
TCCCTCAGGAAAAACATCACCTTCCGAGGCCGACAGAAATATGACCCGAAAAATCCGAGAAGCAGGAAAACTGCTGGATA
TTCCGTTGCTTGACCACCTGATTGTAACTCCCGAAACCTATTACTCTTTTGCAGATGAAGGCGCCCTTTAA

Upstream 100 bases:

>100_bases
TAAATGCAGGGCTGCGCTCCTGCTTTATTGCGTTGCTTTCTGCGTTCGCTCGTCCCTGCCCGGTAGCGGTGCTGTAATTA
ATCTTAAAACTACAGCAGCT

Downstream 100 bases:

>100_bases
AGGCGTTTTCATCTTTCATGCCCTTGTGCTGTTCTGGTTTTTTAAGTAATTTTGCCCTATGAATCATGAAGAAATAAAAC
GATATTTTGAGAACAATCCG

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 156

Protein sequence:

>156_residues
MKNQHQNTDWQKVSEIELIYKTKVKSTERPCITSSRDAYRILLDSWDPGKIEFFEQFKVLLLSQSNRVLGIYEVSSGGIS
GTLVDMRMLFAAALKAAAVGIIITHNHPSGKTSPSEADRNMTRKIREAGKLLDIPLLDHLIVTPETYYSFADEGAL

Sequences:

>Translated_156_residues
MKNQHQNTDWQKVSEIELIYKTKVKSTERPCITSSRDAYRILLDSWDPGKIEFFEQFKVLLLSQSNRVLGIYEVSSGGIS
GTLVDMRMLFAAALKAAAVGIIITHNHPSGKTSPSEADRNMTRKIREAGKLLDIPLLDHLIVTPETYYSFADEGAL
>Mature_156_residues
MKNQHQNTDWQKVSEIELIYKTKVKSTERPCITSSRDAYRILLDSWDPGKIEFFEQFKVLLLSQSNRVLGIYEVSSGGIS
GTLVDMRMLFAAALKAAAVGIIITHNHPSGKTSPSEADRNMTRKIREAGKLLDIPLLDHLIVTPETYYSFADEGAL

Specific function: Unknown

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI1788997, Length=102, Percent_Identity=42.156862745098, Blast_Score=85, Evalue=2e-18,
Organism=Escherichia coli, GI2367100, Length=102, Percent_Identity=40.1960784313725, Blast_Score=83, Evalue=7e-18,
Organism=Escherichia coli, GI1788312, Length=102, Percent_Identity=39.2156862745098, Blast_Score=78, Evalue=3e-16,
Organism=Escherichia coli, GI87082300, Length=100, Percent_Identity=35, Blast_Score=71, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003583
- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 17499; Mature: 17499

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNQHQNTDWQKVSEIELIYKTKVKSTERPCITSSRDAYRILLDSWDPGKIEFFEQFKVL
CCCCCCCCCHHHHHHHHEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHH
LLSQSNRVLGIYEVSSGGISGTLVDMRMLFAAALKAAAVGIIITHNHPSGKTSPSEADRN
EECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCHHHHH
MTRKIREAGKLLDIPLLDHLIVTPETYYSFADEGAL
HHHHHHHCCCEECCCCHHHEEECCHHHHHCCCCCCC
>Mature Secondary Structure
MKNQHQNTDWQKVSEIELIYKTKVKSTERPCITSSRDAYRILLDSWDPGKIEFFEQFKVL
CCCCCCCCCHHHHHHHHEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHH
LLSQSNRVLGIYEVSSGGISGTLVDMRMLFAAALKAAAVGIIITHNHPSGKTSPSEADRN
EECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCHHHHH
MTRKIREAGKLLDIPLLDHLIVTPETYYSFADEGAL
HHHHHHHCCCEECCCCHHHEEECCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA