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The map label for this gene is soxS [H]

Identifier: 146302057

GI number: 146302057

Start: 5220100

End: 5221173

Strand: Reverse

Name: soxS [H]

Synonym: Fjoh_4321

Alternate gene names: 146302057

Gene position: 5221173-5220100 (Counterclockwise)

Preceding gene: 146302060

Following gene: 146302056

Centisome position: 85.64

GC content: 29.52

Gene sequence:

>1074_bases
ATGCGGGTTTTAAAATCTCATTTAAAATTACAGAATTTAAATCGAAACAAAATGAAAATAGTTACTATACATACAGAGAA
AATTCAAAACATATTTGAAGAATTGAATGCAAACTTCGGCGGAAAAGTAACTTTTGACGTTGATGAATATACACTTGAAG
TCAATAATAACTTTGCAAAAGGTTCTATTATTGGGGCTTCATTTAACGATAATATTTCTTATGTTCAGTTTGATATGACT
TTTTCGGCTGATTTAAAGCTGAATGTCATTAACGGATCATCTTCTCCTATATATTTTGCTTATTGTTCAAAAGGAAATCT
TTCACATAGTTTTGGACTTTCAGGCGAAGAAAGAAAATTAAAAACATTTCAGACTGCCATTGTAACTTCAAAACTAAATC
AGGATAATGTTTTATATTTTGAAAAAGATAAAAAAACAAAGTTTACTTTAATTATTGTAGGAACGCAGACTGAACCAAGC
CATGCCAATTCTTTAAACCAAATGGTGAGAGAAACGTTTTTTGAAGAAAACTTAAATGAAGAATTCTTTTATGCCGGTTC
TTATAATTTAAAAATTGGCGAAAAAATCGAACAGTTAAATGCTGTAACACAAACCGGAATTGTTAGAAATTTATTGAAAG
AAGGAATTTTGAGAATTATTCTGGCAATGGAAATTCAGCAGCATACAGATGATGTAAATTCATTCTCGAAAGAAACAAAT
TGTTTGAATTTGAGAGAAATGGAAGAAATAAAAGAACTTTCAGAAGTAATAAAAGCAAATCCCGAAGAACCTTTTACTAT
TAAATCATTAAGTAAAAAATCAGGTCTTTCTCCAAACAAACTTCAGGAAGGTTTTAAAATGATTCACAACAGAACTGTAA
ACGATTATATCACACATATGCGCGTTCTAAAAGCCGAAATCCTTATTAGAACATCAGATTTAAATATCTCTGAAATCGTA
TACTGCATAGGATTTACAAGCAGAAGTTATTTCTCTAAAATCTTTAAACAAAAATTCAACTGCAGCCCAAAAGAATACAA
GTTTAATTTGAATCCGATGGGGATTACAGCTTAA

Upstream 100 bases:

>100_bases
AAATATCATTAATTAGTAATTATAAAACAATTGAGGAAAATTATATAACATTTTTGGTTTACGATTGAGCGAACTTTGAA
TCTGCTTTTAAAACGTAATA

Downstream 100 bases:

>100_bases
ATGAGGGGCAAAGAGACAAAGGTTCAAAGGGACAAAGTTTTTTACTGCTGTCTTACACAAAAGTAATGTCGTTAGCTATT
AAGCATGATATATTCCAAAA

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 357; Mature: 357

Protein sequence:

>357_residues
MRVLKSHLKLQNLNRNKMKIVTIHTEKIQNIFEELNANFGGKVTFDVDEYTLEVNNNFAKGSIIGASFNDNISYVQFDMT
FSADLKLNVINGSSSPIYFAYCSKGNLSHSFGLSGEERKLKTFQTAIVTSKLNQDNVLYFEKDKKTKFTLIIVGTQTEPS
HANSLNQMVRETFFEENLNEEFFYAGSYNLKIGEKIEQLNAVTQTGIVRNLLKEGILRIILAMEIQQHTDDVNSFSKETN
CLNLREMEEIKELSEVIKANPEEPFTIKSLSKKSGLSPNKLQEGFKMIHNRTVNDYITHMRVLKAEILIRTSDLNISEIV
YCIGFTSRSYFSKIFKQKFNCSPKEYKFNLNPMGITA

Sequences:

>Translated_357_residues
MRVLKSHLKLQNLNRNKMKIVTIHTEKIQNIFEELNANFGGKVTFDVDEYTLEVNNNFAKGSIIGASFNDNISYVQFDMT
FSADLKLNVINGSSSPIYFAYCSKGNLSHSFGLSGEERKLKTFQTAIVTSKLNQDNVLYFEKDKKTKFTLIIVGTQTEPS
HANSLNQMVRETFFEENLNEEFFYAGSYNLKIGEKIEQLNAVTQTGIVRNLLKEGILRIILAMEIQQHTDDVNSFSKETN
CLNLREMEEIKELSEVIKANPEEPFTIKSLSKKSGLSPNKLQEGFKMIHNRTVNDYITHMRVLKAEILIRTSDLNISEIV
YCIGFTSRSYFSKIFKQKFNCSPKEYKFNLNPMGITA
>Mature_357_residues
MRVLKSHLKLQNLNRNKMKIVTIHTEKIQNIFEELNANFGGKVTFDVDEYTLEVNNNFAKGSIIGASFNDNISYVQFDMT
FSADLKLNVINGSSSPIYFAYCSKGNLSHSFGLSGEERKLKTFQTAIVTSKLNQDNVLYFEKDKKTKFTLIIVGTQTEPS
HANSLNQMVRETFFEENLNEEFFYAGSYNLKIGEKIEQLNAVTQTGIVRNLLKEGILRIILAMEIQQHTDDVNSFSKETN
CLNLREMEEIKELSEVIKANPEEPFTIKSLSKKSGLSPNKLQEGFKMIHNRTVNDYITHMRVLKAEILIRTSDLNISEIV
YCIGFTSRSYFSKIFKQKFNCSPKEYKFNLNPMGITA

Specific function: Transcriptional activator of the superoxide response regulon of E.coli that includes at least 10 genes such as sodA, nfo, zwf and micF. Binds the DNA sequence 5'-GCACN(7)CAA-3'. It also facilitates the subsequent binding of RNA polymerase to the micF and

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790497, Length=101, Percent_Identity=32.6732673267327, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: 2500 (L-broth) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 40869; Mature: 40869

Theoretical pI: Translated: 8.55; Mature: 8.55

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVLKSHLKLQNLNRNKMKIVTIHTEKIQNIFEELNANFGGKVTFDVDEYTLEVNNNFAK
CCHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHCCCCCCEEEEEECEEEEEECCCCCC
GSIIGASFNDNISYVQFDMTFSADLKLNVINGSSSPIYFAYCSKGNLSHSFGLSGEERKL
CEEEECCCCCCCEEEEEEEEEECCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCHHHH
KTFQTAIVTSKLNQDNVLYFEKDKKTKFTLIIVGTQTEPSHANSLNQMVRETFFEENLNE
HHHHHHHHHHCCCCCCEEEEECCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCC
EFFYAGSYNLKIGEKIEQLNAVTQTGIVRNLLKEGILRIILAMEIQQHTDDVNSFSKETN
CEEEECEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
CLNLREMEEIKELSEVIKANPEEPFTIKSLSKKSGLSPNKLQEGFKMIHNRTVNDYITHM
CCCHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHH
RVLKAEILIRTSDLNISEIVYCIGFTSRSYFSKIFKQKFNCSPKEYKFNLNPMGITA
HHHHHEEEEEECCCCHHHEEEEEECCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCC
>Mature Secondary Structure
MRVLKSHLKLQNLNRNKMKIVTIHTEKIQNIFEELNANFGGKVTFDVDEYTLEVNNNFAK
CCHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHCCCCCCEEEEEECEEEEEECCCCCC
GSIIGASFNDNISYVQFDMTFSADLKLNVINGSSSPIYFAYCSKGNLSHSFGLSGEERKL
CEEEECCCCCCCEEEEEEEEEECCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCHHHH
KTFQTAIVTSKLNQDNVLYFEKDKKTKFTLIIVGTQTEPSHANSLNQMVRETFFEENLNE
HHHHHHHHHHCCCCCCEEEEECCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCC
EFFYAGSYNLKIGEKIEQLNAVTQTGIVRNLLKEGILRIILAMEIQQHTDDVNSFSKETN
CEEEECEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
CLNLREMEEIKELSEVIKANPEEPFTIKSLSKKSGLSPNKLQEGFKMIHNRTVNDYITHM
CCCHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHH
RVLKAEILIRTSDLNISEIVYCIGFTSRSYFSKIFKQKFNCSPKEYKFNLNPMGITA
HHHHHEEEEEECCCCHHHEEEEEECCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]