| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
Click here to switch to the map view.
The map label for this gene is 146302004
Identifier: 146302004
GI number: 146302004
Start: 5155872
End: 5157110
Strand: Reverse
Name: 146302004
Synonym: Fjoh_4268
Alternate gene names: NA
Gene position: 5157110-5155872 (Counterclockwise)
Preceding gene: 146302005
Following gene: 146302003
Centisome position: 84.59
GC content: 35.11
Gene sequence:
>1239_bases ATGAAAACAATTAGCAAATTACCTTTACTATTAGCTGCGTTTGCTTTCACTTTTACTTCATGTGAGAGTAACGACGAAAA AAATGAAGGAAGTAGTGGAGAAACTGGAAAATCAAAATATATAGTTACTGTTTCTACAGGAGCAACTGGAGTAGCAGATT ATTTATTAACTGCTGACGACATTACAAAAGGATCAATTACCACAGCAGGAAATGGATTAGAACAAGACGGTACTTATCGT TACTATTTATCAACGCAAAATAAATTTTTTAGTTTCCTATACGGTCAGGGAAATCCGGGAGCTGTTACTACTTATGGCTT AACTGCAAATGGAAATTTAACTAAGACTTCAAATTTCCAGGCGGAAACAGTACAAGTTTTTGCACCCGTTAACAAAGATA TTTTAATGGTAAAAGTTCCTAGAAGCGGCGCTTCAATTTCTTATATGTATAAAGTTGATGCAGAACAGTCGATACTTACA GGAACCGTATCACAAGATACCAGACTTTTAATTGGAAATAAAAATCCAGATTTAGCAGAAAGAGCTCATTTTACCTGGGC AACTCAGGTGGGAGATAAAGTATTTATGCCTTATATGAAAATTAATGGTATTGCTCCGGATACTTTTGGGACAAGACATG CAGATAGTACTTGGGTAGCTGTATATAGTTATCCAGACCTAAAATTAGAAAAAGTAATTAAAGATGACCGTACAAGTTAC TTAGGAGCTTATTTTACTAATGGATTGTTTCAGGATGAAAAAGGAGATGCTTACGGATTTTCTGGAGCTATTGGAACAGC TAATGGTGTAGTTAGTTCTACAAAACCTTCGGCTGTTGTTAGAATAAATAAAGGTACTACAGAATTTGACAAATCTTACT TCTTTAATGTTCAGGAAAAATCAGGAGGGTATAAAATCTCTTCAACAAGTTATATTTCAAATGGTAAGTTCTTATTATTA ATGTACGGAACTCCTGGGACTAATTCTGGAGCTGTTAGGTTAGCTGTTGCTGATGTATATAACCAAACTTTTAAATGGGT TACTGGCATGCCGGCTTTATTAACAAGTGCTACTACTCGTTACAATATTGCAACAGAAGATGGAAACTCAGCTGTTCTTG GTGTAAATACACCTGATGGAAACTGGATTTATACTATCAATGGTACCTCTGCAGCAGCTACACAAGGTATGAAAGTTGAA GGCGGTCAGATTACTGCAATTCAGAAATTAAAATATTAA
Upstream 100 bases:
>100_bases GATAATTTTTCACTTCAAAAACCTAGTCGTGCTTTTTATCTAAAATTTAGATACTTCTTTAACAAGTCGAATAAATAATT TAATATAAACTTTAATACTT
Downstream 100 bases:
>100_bases TTATTTTTTTAAAACCGTGAGTCTTTTGGCGGGGACTTGCGGTTTTATTTATTCTATTTATCTATCAAAAAATATGTTTT CTTCTTCAAAACCAAAACCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 412; Mature: 412
Protein sequence:
>412_residues MKTISKLPLLLAAFAFTFTSCESNDEKNEGSSGETGKSKYIVTVSTGATGVADYLLTADDITKGSITTAGNGLEQDGTYR YYLSTQNKFFSFLYGQGNPGAVTTYGLTANGNLTKTSNFQAETVQVFAPVNKDILMVKVPRSGASISYMYKVDAEQSILT GTVSQDTRLLIGNKNPDLAERAHFTWATQVGDKVFMPYMKINGIAPDTFGTRHADSTWVAVYSYPDLKLEKVIKDDRTSY LGAYFTNGLFQDEKGDAYGFSGAIGTANGVVSSTKPSAVVRINKGTTEFDKSYFFNVQEKSGGYKISSTSYISNGKFLLL MYGTPGTNSGAVRLAVADVYNQTFKWVTGMPALLTSATTRYNIATEDGNSAVLGVNTPDGNWIYTINGTSAAATQGMKVE GGQITAIQKLKY
Sequences:
>Translated_412_residues MKTISKLPLLLAAFAFTFTSCESNDEKNEGSSGETGKSKYIVTVSTGATGVADYLLTADDITKGSITTAGNGLEQDGTYR YYLSTQNKFFSFLYGQGNPGAVTTYGLTANGNLTKTSNFQAETVQVFAPVNKDILMVKVPRSGASISYMYKVDAEQSILT GTVSQDTRLLIGNKNPDLAERAHFTWATQVGDKVFMPYMKINGIAPDTFGTRHADSTWVAVYSYPDLKLEKVIKDDRTSY LGAYFTNGLFQDEKGDAYGFSGAIGTANGVVSSTKPSAVVRINKGTTEFDKSYFFNVQEKSGGYKISSTSYISNGKFLLL MYGTPGTNSGAVRLAVADVYNQTFKWVTGMPALLTSATTRYNIATEDGNSAVLGVNTPDGNWIYTINGTSAAATQGMKVE GGQITAIQKLKY >Mature_412_residues MKTISKLPLLLAAFAFTFTSCESNDEKNEGSSGETGKSKYIVTVSTGATGVADYLLTADDITKGSITTAGNGLEQDGTYR YYLSTQNKFFSFLYGQGNPGAVTTYGLTANGNLTKTSNFQAETVQVFAPVNKDILMVKVPRSGASISYMYKVDAEQSILT GTVSQDTRLLIGNKNPDLAERAHFTWATQVGDKVFMPYMKINGIAPDTFGTRHADSTWVAVYSYPDLKLEKVIKDDRTSY LGAYFTNGLFQDEKGDAYGFSGAIGTANGVVSSTKPSAVVRINKGTTEFDKSYFFNVQEKSGGYKISSTSYISNGKFLLL MYGTPGTNSGAVRLAVADVYNQTFKWVTGMPALLTSATTRYNIATEDGNSAVLGVNTPDGNWIYTINGTSAAATQGMKVE GGQITAIQKLKY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44373; Mature: 44373
Theoretical pI: Translated: 8.63; Mature: 8.63
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTISKLPLLLAAFAFTFTSCESNDEKNEGSSGETGKSKYIVTVSTGATGVADYLLTADD CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHEEECCC ITKGSITTAGNGLEQDGTYRYYLSTQNKFFSFLYGQGNPGAVTTYGLTANGNLTKTSNFQ CCCCCEEECCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCEEEEEEEECCCEEECCCCC AETVQVFAPVNKDILMVKVPRSGASISYMYKVDAEQSILTGTVSQDTRLLIGNKNPDLAE EEEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCHHH RAHFTWATQVGDKVFMPYMKINGIAPDTFGTRHADSTWVAVYSYPDLKLEKVIKDDRTSY HCEEEEEECCCCEEEECEEEECCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHCCCHHH LGAYFTNGLFQDEKGDAYGFSGAIGTANGVVSSTKPSAVVRINKGTTEFDKSYFFNVQEK HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEEECCCCCCCCCEEEEEEEEC SGGYKISSTSYISNGKFLLLMYGTPGTNSGAVRLAVADVYNQTFKWVTGMPALLTSATTR CCCEEEECCEEECCCCEEEEEECCCCCCCCEEEEEEEHHHHHHHHHHCCCCHHHHCCCEE YNIATEDGNSAVLGVNTPDGNWIYTINGTSAAATQGMKVEGGQITAIQKLKY EEEEECCCCEEEEEEECCCCCEEEEECCCCHHHCCCEEECCCEEEEEEEECC >Mature Secondary Structure MKTISKLPLLLAAFAFTFTSCESNDEKNEGSSGETGKSKYIVTVSTGATGVADYLLTADD CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHEEECCC ITKGSITTAGNGLEQDGTYRYYLSTQNKFFSFLYGQGNPGAVTTYGLTANGNLTKTSNFQ CCCCCEEECCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCEEEEEEEECCCEEECCCCC AETVQVFAPVNKDILMVKVPRSGASISYMYKVDAEQSILTGTVSQDTRLLIGNKNPDLAE EEEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCHHH RAHFTWATQVGDKVFMPYMKINGIAPDTFGTRHADSTWVAVYSYPDLKLEKVIKDDRTSY HCEEEEEECCCCEEEECEEEECCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHCCCHHH LGAYFTNGLFQDEKGDAYGFSGAIGTANGVVSSTKPSAVVRINKGTTEFDKSYFFNVQEK HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEEECCCCCCCCCEEEEEEEEC SGGYKISSTSYISNGKFLLLMYGTPGTNSGAVRLAVADVYNQTFKWVTGMPALLTSATTR CCCEEEECCEEECCCCEEEEEECCCCCCCCEEEEEEEHHHHHHHHHHCCCCHHHHCCCEE YNIATEDGNSAVLGVNTPDGNWIYTINGTSAAATQGMKVEGGQITAIQKLKY EEEEECCCCEEEEEEECCCCCEEEEECCCCHHHCCCEEECCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA