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The map label for this gene is pehX [H]

Identifier: 146301983

GI number: 146301983

Start: 5125269

End: 5126615

Strand: Reverse

Name: pehX [H]

Synonym: Fjoh_4247

Alternate gene names: 146301983

Gene position: 5126615-5125269 (Counterclockwise)

Preceding gene: 146301984

Following gene: 146301982

Centisome position: 84.09

GC content: 33.56

Gene sequence:

>1347_bases
ATGAAATATTTACTTCTATTATTAATTTCCTATGTTTCATTTGCTCAGCAAAATAATTTTCCAAGAGCAAAAGCCGATTC
AATAATAAGCAGAATTCAGCCTCCTGTATTTTCTGCTTATCAGGTTAATGTTTTAAAATTAGGAGCAAAAGGAGATTCTA
TTACAAATAACAAAGCTGTTTTTGATAAAGCAATGGCTTTATGTAAAAAGAAAGGCGGAGGAACTATTATAGTACCAAAA
GGAATTTATAAAATAAATGGCCCTATCCATTTTGTAAGCAATGTAAATCTGAAAATTGAAAAAGGAGCCAAGATAAAATT
CAGCGACAACCCTCAGGATTATCCTTTAGTATTGACAAGCTGGGAAGGTACAATGCTTTATAATTACAGTCCGTTGATTT
ATGCAGTTGATTGTACCAATATCGCTATAACAGGAGTAGGAATAATTGACGGCGAGGGAGGAAAAATATGGAAAAGTTTC
AAAGCTAAAGAAGGAGCAGGTAAAAACCTGAGCAGGGAAATGAATCATAATAATGTTCCTGTAAGCGACAGAAAGTTTGG
AGAAGGTTACTTTTTGCGTCCGCAGATGATCCAGTTTTTAAATTGCAAAAATATATTAGTAGAAAATGTTAGAATTGAAA
ACTCGCCATTTTGGTGTCTGCACCTTTTAAAATCACAAAACATAACGGTTCGAGGCATCAGTTATAAATCATTAAACTAT
AATAATGACGGAATTGATCCTGAATATGCAAAAGATGTTTTAATCGAAAATGTGACTTTTGACAATGGCGACGACAATGT
GGCTATAAAAGCCGGACGAGATCATGAAGGAAGAGCTAATACTGCATCGCCAAGCGAGAATATCGTAATTAGGAACTGTA
ACTTTAAAGGACTGCACGGAGTTGTCATTGGCAGTGAAATGTCAGCAGGAGTACAAAATGTGTTTGTTGAAAACTGTAAA
ACCGCCGGCTATTTAAAAAGAGGAATTTATTTAAAGACCAATGCAGACAGAGGAGGTTACATCAAAAATGTGTTTGTTCA
AAATTTACAATTAGATGAAGTCGAAGATTGTCTTTATATAACAGCCAATTATCATGGAGAAGGTGAAGGTTATCAGTCTG
ATATTTCAAATATCCATTTTTCAAATATTACATGTAATAGAGCATCAGAATCAGGAATTGTCATTCAGGGATTCTCCGAT
AAAAAAATCAGAAGCATATCCTTAAATAATATAGATATAAAAGAAGCAAAAAATGCCTTGTCAAATGAAAATGCAGAAAA
TGTAATAATGACTGATGTTTTTATAGGTAAAAGAGCAACTGTGCCAACGGCGGTTTCAAAACATTAA

Upstream 100 bases:

>100_bases
TTACTAAGTATCTGAATTAGACTTAAAAACTTAATATCTTAGAACATCTGTACCTAAAACCTTAGAACCTTAGCATCTCA
GAACCTTAGAACCTAAAAAA

Downstream 100 bases:

>100_bases
ATAAAAAGAATAAAATGAAAAAATCATCTGCTTAATATTATTAATCTCCACAACCTGTTTCGCACAAAAAACAACCTTAT
ATACTATAGGTGACTCCACA

Product: glycoside hydrolase family protein

Products: NA

Alternate protein names: Exo-PG [H]

Number of amino acids: Translated: 448; Mature: 448

Protein sequence:

>448_residues
MKYLLLLLISYVSFAQQNNFPRAKADSIISRIQPPVFSAYQVNVLKLGAKGDSITNNKAVFDKAMALCKKKGGGTIIVPK
GIYKINGPIHFVSNVNLKIEKGAKIKFSDNPQDYPLVLTSWEGTMLYNYSPLIYAVDCTNIAITGVGIIDGEGGKIWKSF
KAKEGAGKNLSREMNHNNVPVSDRKFGEGYFLRPQMIQFLNCKNILVENVRIENSPFWCLHLLKSQNITVRGISYKSLNY
NNDGIDPEYAKDVLIENVTFDNGDDNVAIKAGRDHEGRANTASPSENIVIRNCNFKGLHGVVIGSEMSAGVQNVFVENCK
TAGYLKRGIYLKTNADRGGYIKNVFVQNLQLDEVEDCLYITANYHGEGEGYQSDISNIHFSNITCNRASESGIVIQGFSD
KKIRSISLNNIDIKEAKNALSNENAENVIMTDVFIGKRATVPTAVSKH

Sequences:

>Translated_448_residues
MKYLLLLLISYVSFAQQNNFPRAKADSIISRIQPPVFSAYQVNVLKLGAKGDSITNNKAVFDKAMALCKKKGGGTIIVPK
GIYKINGPIHFVSNVNLKIEKGAKIKFSDNPQDYPLVLTSWEGTMLYNYSPLIYAVDCTNIAITGVGIIDGEGGKIWKSF
KAKEGAGKNLSREMNHNNVPVSDRKFGEGYFLRPQMIQFLNCKNILVENVRIENSPFWCLHLLKSQNITVRGISYKSLNY
NNDGIDPEYAKDVLIENVTFDNGDDNVAIKAGRDHEGRANTASPSENIVIRNCNFKGLHGVVIGSEMSAGVQNVFVENCK
TAGYLKRGIYLKTNADRGGYIKNVFVQNLQLDEVEDCLYITANYHGEGEGYQSDISNIHFSNITCNRASESGIVIQGFSD
KKIRSISLNNIDIKEAKNALSNENAENVIMTDVFIGKRATVPTAVSKH
>Mature_448_residues
MKYLLLLLISYVSFAQQNNFPRAKADSIISRIQPPVFSAYQVNVLKLGAKGDSITNNKAVFDKAMALCKKKGGGTIIVPK
GIYKINGPIHFVSNVNLKIEKGAKIKFSDNPQDYPLVLTSWEGTMLYNYSPLIYAVDCTNIAITGVGIIDGEGGKIWKSF
KAKEGAGKNLSREMNHNNVPVSDRKFGEGYFLRPQMIQFLNCKNILVENVRIENSPFWCLHLLKSQNITVRGISYKSLNY
NNDGIDPEYAKDVLIENVTFDNGDDNVAIKAGRDHEGRANTASPSENIVIRNCNFKGLHGVVIGSEMSAGVQNVFVENCK
TAGYLKRGIYLKTNADRGGYIKNVFVQNLQLDEVEDCLYITANYHGEGEGYQSDISNIHFSNITCNRASESGIVIQGFSD
KKIRSISLNNIDIKEAKNALSNENAENVIMTDVFIGKRATVPTAVSKH

Specific function: Contributes significantly to bacterial utilization of polygalacturonate and the induction of pectate lyase in the presence of extracellular pectic polymers [H]

COG id: COG5434

COG function: function code M; Endopolygalacturonase

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 4 PbH1 repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008957
- InterPro:   IPR003961
- InterPro:   IPR000743
- InterPro:   IPR013783
- InterPro:   IPR006626
- InterPro:   IPR012334
- InterPro:   IPR011050 [H]

Pfam domain/function: PF00041 fn3; PF00295 Glyco_hydro_28 [H]

EC number: =3.2.1.82 [H]

Molecular weight: Translated: 49572; Mature: 49572

Theoretical pI: Translated: 8.91; Mature: 8.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYLLLLLISYVSFAQQNNFPRAKADSIISRIQPPVFSAYQVNVLKLGAKGDSITNNKAV
CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCHHH
FDKAMALCKKKGGGTIIVPKGIYKINGPIHFVSNVNLKIEKGAKIKFSDNPQDYPLVLTS
HHHHHHHHHCCCCCEEEECCCEEEECCCEEEEEECEEEEECCCEEEECCCCCCCCEEEEE
WEGTMLYNYSPLIYAVDCTNIAITGVGIIDGEGGKIWKSFKAKEGAGKNLSREMNHNNVP
CCCEEEEECCCEEEEEECCCEEEEEEEEEECCCCCEEHHHCCCCCCCCCCHHHCCCCCCC
VSDRKFGEGYFLRPQMIQFLNCKNILVENVRIENSPFWCLHLLKSQNITVRGISYKSLNY
CCCCCCCCCEEECHHHHHHHCCCCEEEEEEEECCCCEEEEEEECCCCEEEEEEEEEECCC
NNDGIDPEYAKDVLIENVTFDNGDDNVAIKAGRDHEGRANTASPSENIVIRNCNFKGLHG
CCCCCCHHHHHHHEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCEEE
VVIGSEMSAGVQNVFVENCKTAGYLKRGIYLKTNADRGGYIKNVFVQNLQLDEVEDCLYI
EEECCCHHCCHHHHHHHCCCCCCHHHCCEEEEECCCCCCEEEEHHHCCCCCCCCCCEEEE
TANYHGEGEGYQSDISNIHFSNITCNRASESGIVIQGFSDKKIRSISLNNIDIKEAKNAL
EEEECCCCCCCHHHHCEEEEEEEEECCCCCCCEEEECCCCCCEEEEECCCCCHHHHHHHH
SNENAENVIMTDVFIGKRATVPTAVSKH
CCCCCCCEEEEEEEECCCCCCCCCCCCC
>Mature Secondary Structure
MKYLLLLLISYVSFAQQNNFPRAKADSIISRIQPPVFSAYQVNVLKLGAKGDSITNNKAV
CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCHHH
FDKAMALCKKKGGGTIIVPKGIYKINGPIHFVSNVNLKIEKGAKIKFSDNPQDYPLVLTS
HHHHHHHHHCCCCCEEEECCCEEEECCCEEEEEECEEEEECCCEEEECCCCCCCCEEEEE
WEGTMLYNYSPLIYAVDCTNIAITGVGIIDGEGGKIWKSFKAKEGAGKNLSREMNHNNVP
CCCEEEEECCCEEEEEECCCEEEEEEEEEECCCCCEEHHHCCCCCCCCCCHHHCCCCCCC
VSDRKFGEGYFLRPQMIQFLNCKNILVENVRIENSPFWCLHLLKSQNITVRGISYKSLNY
CCCCCCCCCEEECHHHHHHHCCCCEEEEEEEECCCCEEEEEEECCCCEEEEEEEEEECCC
NNDGIDPEYAKDVLIENVTFDNGDDNVAIKAGRDHEGRANTASPSENIVIRNCNFKGLHG
CCCCCCHHHHHHHEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCEEE
VVIGSEMSAGVQNVFVENCKTAGYLKRGIYLKTNADRGGYIKNVFVQNLQLDEVEDCLYI
EEECCCHHCCHHHHHHHCCCCCCHHHCCEEEEECCCCCCEEEEHHHCCCCCCCCCCEEEE
TANYHGEGEGYQSDISNIHFSNITCNRASESGIVIQGFSDKKIRSISLNNIDIKEAKNAL
EEEECCCCCCCHHHHCEEEEEEEEECCCCCCCEEEECCCCCCEEEEECCCCCHHHHHHHH
SNENAENVIMTDVFIGKRATVPTAVSKH
CCCCCCCEEEEEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2168372; 1409594 [H]