| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146301971
Identifier: 146301971
GI number: 146301971
Start: 5101704
End: 5104499
Strand: Direct
Name: 146301971
Synonym: Fjoh_4235
Alternate gene names: NA
Gene position: 5101704-5104499 (Clockwise)
Preceding gene: 146301962
Following gene: 146301972
Centisome position: 83.68
GC content: 36.27
Gene sequence:
>2796_bases ATGAAACTATCCTTAAAAACCTTCTTTTATACAATGCTGCTTTTTAGTTTTTTTCATGCCTTTTCTCAGGAAAAATTAGT TTCGCCCTGGCCGGAATCCAGTAACATAAATCAACCGTGGGCACGCTGGTGGTGGATGGGAAGTGCGGTGGATAAACCTA ACTTAAAAAGAAGTCTGATTGATTTTCATAAAGCCGGAATTGGCGGTGTCGAAATTACGCCAATCTATGGTGTTAAAGGA GAAGAGAACAATTTTATTGATTATTTATCTCCAAAGTGGATGGAAATGCTTGACTATACAATTCACGTTTCTGACAGCTT AAAGATGCAGGTTGATATGGTTTTAGGTACCGGATGGCCGTACGGAGGATCGCACGTAACTCTGCCTCATGCCGCAACCA AACTAATTGTAGAAAAATATACAGTTAAGAAAAACGAAACTTTTGATCGAGATATTACTGTAGACAGCAGTAAAGAAAAA ACACCGGCATCACTTTTATATGTTGTGGCATACGGAAACGATGGTTCGTTTGTTAACCTGACCAATGAGCTTCAAAACAA AAAGGTTAATGTAAAAGACAAAGGACTCGAAGGCTCAAACATTAAACTTCCTAACAAACTCGAACCAAATAAATTAAACT GGAAAGCAAAAAAGGCTGATTATACAATTTATGCTGTTTTTAGCGGTAAAACCGGACAACAGGTAAAAAGAGCCGCTCCG GGCGGAAAAGGCTATACTTTAGATCATTATTCTGAAGAAGCTTTAAAAGCTTATGTCATTCCTTTTAATGAGGCTTTGAA AGGCAGAGAAGGAAAAATAAGAGCTGTTTTTAATGACAGTTTTGAAGTCTACGGAACTGATTTTACACCGAATTTCTTTG AAGAATTTCAAAAATTACGCGGTTACGATTTAAAAAAACAACTTCCTGTTCTGCTGAATGAAACTGATAATGAAATTGGA AACCGAATAAGAAGTGATTATCGCCAAACCATTTCTGATTTGTTATTGAATAAATTTGACAAATTTTGGACGAACTGGGC ACATTCTAAAAATTTCAAAACCAAACTTCAGGCACACGGTTCTCCCGGAAATTTAATCGATTTATATGCTTCTGCCGATA TTCCGGAATGCGAAACTTTTGGTTCGATGCCTTTTGATATTCCGGGTTTCAGACGTGATAAAGAAGATATACGCGAAGGA GATGCTGATCCTGTAATGCTGAAATTTTCTTCTTCGGCCGCGCATATCTCAGGAAAAAATCTGGTTTCATCCGAGACTTT TACATGGCTTCGAGAACATTTCAAAACTGCTTTGTCTCAGTGCAAACCCGAAGCCGAAGATTTAATGCTCAATGGTGTTA ATCATATTTTTCTGCATGGATCTACTTATTCGCCAGACCGTGCTGTATGGCCGGGATGGCAGTTTTATGCTTCAGTAAAT TTCAATTCTAATAATACCATTTGGGAAGATGCGCCGGCTTTGTTCTCTTATATTTCAAACTGTCAGTCGCTGTTACAGCA GGGAAAACCAGATAACGAAATCCTGCTTTACTGGCCTATTTTTGATGCCTGGGATAAATATGAAAAAGGCACTTTGTTTT ATCAGTTCAAAATACATTCTTTATCTGACTGGCTTTATGGAACTTCTTTTTACGATACCACAAAAAATCTCATGAAAAAA GGCTACAGTGTTGATTTTATATCTGATAATTTCATTGCCGAAGCCAAAGTTGTCAATGGAAACATTGTACTGCCTGGAGG AAATTTTAAATCATTGGTAATTCCGTCCTGCAAAAAAATGCCTGTTGAAACCCTGCAAAAACTTATCGAATTAAAAAAAG CAGGAGCCTGTATCCTATTTGAAGGACTTCCAGAATCGGTTCCGGGATTTAAAGATTATAAAAAGCAAGAACAGAACTTA AAAAATCTTTTAGCTGAAAATAAAATACAAGCCGTTTCAAATATTTTTACAAGTTTAGAAGATGCCAAAATTCTACCTGA AAGTTTAGTAAATACCGGTTTAAAATCCATCAGAAGAGATATTAACGGCGAAAAAATCTATTATCTGGTCAATCATACTG CTAAAACAATAGACGATTTTATTCCGCTTCAAGTTGAGAATAAAGAAATAATACTTCTTGATCCGCTCACACACGAATCT GGAAATGCCATTGTCAATAAAAAAGATAAAATCACTTATGTAAAAATCAAAATTGAGCCGGGACAATCCTATTTTTTAAA GACTGAAAATACGGCTTCACAAAAAAAATGGAACTATTTTGAAAGCGCTTCTGAACCCATTGCATTAAAAGGAAACTGGA AATTATCGTTTGACAAAGGCGGTCCTAAATTACCTGCTGATGCTGTAGTTTCAAATTTAGAATCATGGACAAAATTAAGT CCGGATGCTGAAGCTTTTTCGGGATCAGCAGCTTATACGCTTCAATTTGAGAATCCAAATCCTAAAATAGAAAATTGGAG TCTTAATCTTGGCGATGTACGCGAAAGTGCTAAAGTCTGGCTGAATGATGAATTTATTGGTACTGCATGGTCAGTTCCGT ATAAACTGAACATTCAAAAATTGAAACCCGGAAAAAATGTTTTAAAAATTCAGGTAACCAATCTTCCTGCAAACCGAATA CGTGATATGGAATTAAAAGGTCAGGAATGGAAAATTTTTCACGAAATAAATATGGTCGACAAAGATTATAAAAAGTTTGA TGCAACAAAATGGATTCCAATGCCGTCCGGACTTTTAGGTCCTGTAACCCTGACCGCTCTAAAACAAGAAAACTAA
Upstream 100 bases:
>100_bases TACTTTTACTTTATTGAGACAAAATTTCTATAGTCGTATTCAATACAAAAAAATAAGAAAAGATTTATTTTTTAACCAGT CAAAAACCAAAAATTATATA
Downstream 100 bases:
>100_bases CTGCCAAATAACCACAAATGAAAAAATTAATTTCACTTTTAGCCGTCTCCATTTTTTACACTTCGAGTCTTTCTGCACAA GAACCATTTGATAAAAAATT
Product: glycoside hydrolase family protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 931; Mature: 931
Protein sequence:
>931_residues MKLSLKTFFYTMLLFSFFHAFSQEKLVSPWPESSNINQPWARWWWMGSAVDKPNLKRSLIDFHKAGIGGVEITPIYGVKG EENNFIDYLSPKWMEMLDYTIHVSDSLKMQVDMVLGTGWPYGGSHVTLPHAATKLIVEKYTVKKNETFDRDITVDSSKEK TPASLLYVVAYGNDGSFVNLTNELQNKKVNVKDKGLEGSNIKLPNKLEPNKLNWKAKKADYTIYAVFSGKTGQQVKRAAP GGKGYTLDHYSEEALKAYVIPFNEALKGREGKIRAVFNDSFEVYGTDFTPNFFEEFQKLRGYDLKKQLPVLLNETDNEIG NRIRSDYRQTISDLLLNKFDKFWTNWAHSKNFKTKLQAHGSPGNLIDLYASADIPECETFGSMPFDIPGFRRDKEDIREG DADPVMLKFSSSAAHISGKNLVSSETFTWLREHFKTALSQCKPEAEDLMLNGVNHIFLHGSTYSPDRAVWPGWQFYASVN FNSNNTIWEDAPALFSYISNCQSLLQQGKPDNEILLYWPIFDAWDKYEKGTLFYQFKIHSLSDWLYGTSFYDTTKNLMKK GYSVDFISDNFIAEAKVVNGNIVLPGGNFKSLVIPSCKKMPVETLQKLIELKKAGACILFEGLPESVPGFKDYKKQEQNL KNLLAENKIQAVSNIFTSLEDAKILPESLVNTGLKSIRRDINGEKIYYLVNHTAKTIDDFIPLQVENKEIILLDPLTHES GNAIVNKKDKITYVKIKIEPGQSYFLKTENTASQKKWNYFESASEPIALKGNWKLSFDKGGPKLPADAVVSNLESWTKLS PDAEAFSGSAAYTLQFENPNPKIENWSLNLGDVRESAKVWLNDEFIGTAWSVPYKLNIQKLKPGKNVLKIQVTNLPANRI RDMELKGQEWKIFHEINMVDKDYKKFDATKWIPMPSGLLGPVTLTALKQEN
Sequences:
>Translated_931_residues MKLSLKTFFYTMLLFSFFHAFSQEKLVSPWPESSNINQPWARWWWMGSAVDKPNLKRSLIDFHKAGIGGVEITPIYGVKG EENNFIDYLSPKWMEMLDYTIHVSDSLKMQVDMVLGTGWPYGGSHVTLPHAATKLIVEKYTVKKNETFDRDITVDSSKEK TPASLLYVVAYGNDGSFVNLTNELQNKKVNVKDKGLEGSNIKLPNKLEPNKLNWKAKKADYTIYAVFSGKTGQQVKRAAP GGKGYTLDHYSEEALKAYVIPFNEALKGREGKIRAVFNDSFEVYGTDFTPNFFEEFQKLRGYDLKKQLPVLLNETDNEIG NRIRSDYRQTISDLLLNKFDKFWTNWAHSKNFKTKLQAHGSPGNLIDLYASADIPECETFGSMPFDIPGFRRDKEDIREG DADPVMLKFSSSAAHISGKNLVSSETFTWLREHFKTALSQCKPEAEDLMLNGVNHIFLHGSTYSPDRAVWPGWQFYASVN FNSNNTIWEDAPALFSYISNCQSLLQQGKPDNEILLYWPIFDAWDKYEKGTLFYQFKIHSLSDWLYGTSFYDTTKNLMKK GYSVDFISDNFIAEAKVVNGNIVLPGGNFKSLVIPSCKKMPVETLQKLIELKKAGACILFEGLPESVPGFKDYKKQEQNL KNLLAENKIQAVSNIFTSLEDAKILPESLVNTGLKSIRRDINGEKIYYLVNHTAKTIDDFIPLQVENKEIILLDPLTHES GNAIVNKKDKITYVKIKIEPGQSYFLKTENTASQKKWNYFESASEPIALKGNWKLSFDKGGPKLPADAVVSNLESWTKLS PDAEAFSGSAAYTLQFENPNPKIENWSLNLGDVRESAKVWLNDEFIGTAWSVPYKLNIQKLKPGKNVLKIQVTNLPANRI RDMELKGQEWKIFHEINMVDKDYKKFDATKWIPMPSGLLGPVTLTALKQEN >Mature_931_residues MKLSLKTFFYTMLLFSFFHAFSQEKLVSPWPESSNINQPWARWWWMGSAVDKPNLKRSLIDFHKAGIGGVEITPIYGVKG EENNFIDYLSPKWMEMLDYTIHVSDSLKMQVDMVLGTGWPYGGSHVTLPHAATKLIVEKYTVKKNETFDRDITVDSSKEK TPASLLYVVAYGNDGSFVNLTNELQNKKVNVKDKGLEGSNIKLPNKLEPNKLNWKAKKADYTIYAVFSGKTGQQVKRAAP GGKGYTLDHYSEEALKAYVIPFNEALKGREGKIRAVFNDSFEVYGTDFTPNFFEEFQKLRGYDLKKQLPVLLNETDNEIG NRIRSDYRQTISDLLLNKFDKFWTNWAHSKNFKTKLQAHGSPGNLIDLYASADIPECETFGSMPFDIPGFRRDKEDIREG DADPVMLKFSSSAAHISGKNLVSSETFTWLREHFKTALSQCKPEAEDLMLNGVNHIFLHGSTYSPDRAVWPGWQFYASVN FNSNNTIWEDAPALFSYISNCQSLLQQGKPDNEILLYWPIFDAWDKYEKGTLFYQFKIHSLSDWLYGTSFYDTTKNLMKK GYSVDFISDNFIAEAKVVNGNIVLPGGNFKSLVIPSCKKMPVETLQKLIELKKAGACILFEGLPESVPGFKDYKKQEQNL KNLLAENKIQAVSNIFTSLEDAKILPESLVNTGLKSIRRDINGEKIYYLVNHTAKTIDDFIPLQVENKEIILLDPLTHES GNAIVNKKDKITYVKIKIEPGQSYFLKTENTASQKKWNYFESASEPIALKGNWKLSFDKGGPKLPADAVVSNLESWTKLS PDAEAFSGSAAYTLQFENPNPKIENWSLNLGDVRESAKVWLNDEFIGTAWSVPYKLNIQKLKPGKNVLKIQVTNLPANRI RDMELKGQEWKIFHEINMVDKDYKKFDATKWIPMPSGLLGPVTLTALKQEN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 105836; Mature: 105836
Theoretical pI: Translated: 8.32; Mature: 8.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLSLKTFFYTMLLFSFFHAFSQEKLVSPWPESSNINQPWARWWWMGSAVDKPNLKRSLI CEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHEECCCCCCCCCHHHHHH DFHKAGIGGVEITPIYGVKGEENNFIDYLSPKWMEMLDYTIHVSDSLKMQVDMVLGTGWP HHHHCCCCCEEEEEEECCCCCCCCEECCCCHHHHHHCCEEEEECCCCEEEEEEEEECCCC YGGSHVTLPHAATKLIVEKYTVKKNETFDRDITVDSSKEKTPASLLYVVAYGNDGSFVNL CCCCEEECCHHHHHHHHHHHEECCCCCCCCCEEECCCCCCCCCEEEEEEEECCCCCEEEE TNELQNKKVNVKDKGLEGSNIKLPNKLEPNKLNWKAKKADYTIYAVFSGKTGQQVKRAAP CHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEEEECCCCHHHHHCCC GGKGYTLDHYSEEALKAYVIPFNEALKGREGKIRAVFNDSFEVYGTDFTPNFFEEFQKLR CCCCCCCCCCCCCCCEEEEEECHHHHCCCCCCEEEEECCCEEEEECCCCHHHHHHHHHHC GYDLKKQLPVLLNETDNEIGNRIRSDYRQTISDLLLNKFDKFWTNWAHSKNFKTKLQAHG CCCCHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECC SPGNLIDLYASADIPECETFGSMPFDIPGFRRDKEDIREGDADPVMLKFSSSAAHISGKN CCCCEEEEEECCCCCCHHHCCCCCCCCCCCCCCHHHHHCCCCCEEEEEECCCCCEECCCC LVSSETFTWLREHFKTALSQCKPEAEDLMLNGVNHIFLHGSTYSPDRAVWPGWQFYASVN CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEEEEE FNSNNTIWEDAPALFSYISNCQSLLQQGKPDNEILLYWPIFDAWDKYEKGTLFYQFKIHS ECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECHHCCCCCCCCEEEEEEEEEC LSDWLYGTSFYDTTKNLMKKGYSVDFISDNFIAEAKVVNGNIVLPGGNFKSLVIPSCKKM HHHHHCCCCHHHHHHHHHHCCCEEEEECCCCEEEEEEEECCEEECCCCCCEEECCCCCCC PVETLQKLIELKKAGACILFEGLPESVPGFKDYKKQEQNLKNLLAENKIQAVSNIFTSLE CHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DAKILPESLVNTGLKSIRRDINGEKIYYLVNHTAKTIDDFIPLQVENKEIILLDPLTHES HHHCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHCCCEEECCCEEEEECCCCCCC GNAIVNKKDKITYVKIKIEPGQSYFLKTENTASQKKWNYFESASEPIALKGNWKLSFDKG CCEEEECCCCEEEEEEEECCCCEEEEEECCCCCHHHCCHHHCCCCCEEEECCEEEEECCC GPKLPADAVVSNLESWTKLSPDAEAFSGSAAYTLQFENPNPKIENWSLNLGDVRESAKVW CCCCCHHHHHHHHHHHHCCCCCHHHCCCCEEEEEEECCCCCCCEEEECCHHHHCCCCEEE LNDEFIGTAWSVPYKLNIQKLKPGKNVLKIQVTNLPANRIRDMELKGQEWKIFHEINMVD ECCCEECCEECCCEEEEEEEECCCCCEEEEEEECCCHHHCCCCCCCCCCEEEEEEECCCC KDYKKFDATKWIPMPSGLLGPVTLTALKQEN HHHHHHCCCCCCCCCCCCCCCEEEEEEECCC >Mature Secondary Structure MKLSLKTFFYTMLLFSFFHAFSQEKLVSPWPESSNINQPWARWWWMGSAVDKPNLKRSLI CEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHEECCCCCCCCCHHHHHH DFHKAGIGGVEITPIYGVKGEENNFIDYLSPKWMEMLDYTIHVSDSLKMQVDMVLGTGWP HHHHCCCCCEEEEEEECCCCCCCCEECCCCHHHHHHCCEEEEECCCCEEEEEEEEECCCC YGGSHVTLPHAATKLIVEKYTVKKNETFDRDITVDSSKEKTPASLLYVVAYGNDGSFVNL CCCCEEECCHHHHHHHHHHHEECCCCCCCCCEEECCCCCCCCCEEEEEEEECCCCCEEEE TNELQNKKVNVKDKGLEGSNIKLPNKLEPNKLNWKAKKADYTIYAVFSGKTGQQVKRAAP CHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEEEECCCCHHHHHCCC GGKGYTLDHYSEEALKAYVIPFNEALKGREGKIRAVFNDSFEVYGTDFTPNFFEEFQKLR CCCCCCCCCCCCCCCEEEEEECHHHHCCCCCCEEEEECCCEEEEECCCCHHHHHHHHHHC GYDLKKQLPVLLNETDNEIGNRIRSDYRQTISDLLLNKFDKFWTNWAHSKNFKTKLQAHG CCCCHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECC SPGNLIDLYASADIPECETFGSMPFDIPGFRRDKEDIREGDADPVMLKFSSSAAHISGKN CCCCEEEEEECCCCCCHHHCCCCCCCCCCCCCCHHHHHCCCCCEEEEEECCCCCEECCCC LVSSETFTWLREHFKTALSQCKPEAEDLMLNGVNHIFLHGSTYSPDRAVWPGWQFYASVN CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEEEEE FNSNNTIWEDAPALFSYISNCQSLLQQGKPDNEILLYWPIFDAWDKYEKGTLFYQFKIHS ECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECHHCCCCCCCCEEEEEEEEEC LSDWLYGTSFYDTTKNLMKKGYSVDFISDNFIAEAKVVNGNIVLPGGNFKSLVIPSCKKM HHHHHCCCCHHHHHHHHHHCCCEEEEECCCCEEEEEEEECCEEECCCCCCEEECCCCCCC PVETLQKLIELKKAGACILFEGLPESVPGFKDYKKQEQNLKNLLAENKIQAVSNIFTSLE CHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DAKILPESLVNTGLKSIRRDINGEKIYYLVNHTAKTIDDFIPLQVENKEIILLDPLTHES HHHCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHCCCEEECCCEEEEECCCCCCC GNAIVNKKDKITYVKIKIEPGQSYFLKTENTASQKKWNYFESASEPIALKGNWKLSFDKG CCEEEECCCCEEEEEEEECCCCEEEEEECCCCCHHHCCHHHCCCCCEEEECCEEEEECCC GPKLPADAVVSNLESWTKLSPDAEAFSGSAAYTLQFENPNPKIENWSLNLGDVRESAKVW CCCCCHHHHHHHHHHHHCCCCCHHHCCCCEEEEEEECCCCCCCEEEECCHHHHCCCCEEE LNDEFIGTAWSVPYKLNIQKLKPGKNVLKIQVTNLPANRIRDMELKGQEWKIFHEINMVD ECCCEECCEECCCEEEEEEEECCCCCEEEEEEECCCHHHCCCCCCCCCCEEEEEEECCCC KDYKKFDATKWIPMPSGLLGPVTLTALKQEN HHHHHHCCCCCCCCCCCCCCCEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA