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The map label for this gene is 146301907

Identifier: 146301907

GI number: 146301907

Start: 5001705

End: 5002247

Strand: Reverse

Name: 146301907

Synonym: Fjoh_4171

Alternate gene names: NA

Gene position: 5002247-5001705 (Counterclockwise)

Preceding gene: 146301909

Following gene: 146301906

Centisome position: 82.05

GC content: 32.41

Gene sequence:

>543_bases
ATGTTACCCAAATTACCAATGAAGAATCCTGAAATTTTTGAACAAACGTATACAGACTACTGGCAGAAACTCAATGCCTT
TTCTTATACGATGACTCAGGATAAAGATTTGGCACAGAACATTGTTCAGGATGTATTTATTGATTTATGGGAACGAAAAG
ACGATTTAAACATCAATGCAATCGAACCATATTTATTCAGGGCTGTAAAAAATCAGATTTTTAAACATTACCAGAATAAT
CGTTTTGATAAGACGATTATGGAAGACAAATTTGAAGATTACATTATCGACAATTTTTCGACTATTGATCCAGAGGTAAC
AGATTTGCTTTATTCCTTATTAGACAAACTTCCCGAAAAAAGAAAAGAGGTTTTATTAATGTACAAATTCCAGGATATGT
CAATTGACCAGATTGCAGATGAACTTGGAATTTCAAAACAAACGGTGAAAAACCAAATTTCATCGGCACTAAAACAATTG
CGTGAAGGCTTGAAAGATCTGGTCTGGCTGGCTCCAATTGTATTTTTTAAACAAAATTTTTAA

Upstream 100 bases:

>100_bases
AATAGTAGTATTTATACATCAAAAACATTTATTATTTAATTTAAAGATAACTTTCAGGCAAAAAATATTGGTGTTGTATT
TTATTATTTTACAATACTTA

Downstream 100 bases:

>100_bases
GATAACTTTCTGTTGATGTTTTCATAATATTTGGCGATAGTACGATTTCAAGATTCTGGTACTTACTTGTAATAACAAAC
CTTTTTAATTGAATTGGTTT

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma-70 Factor; Transcriptional Regulator LuxR Family; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase Sigma Factor; RNA Polymerase Sigma-H Factor; RNA Polymerase Sigma-W Factor; ECF-Type RNA Polymerase Sigma Factor; ECF Family RNA Polymerase Sigma-70 Factor; ECF Subfamily RNA Polymerase Sigma-70 Factor; Sigma-70 Region 4 Subfamily; Sigma Factor; ECF Subfamily RNA Polymerase Sigma Factor; Sigma-70 Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MLPKLPMKNPEIFEQTYTDYWQKLNAFSYTMTQDKDLAQNIVQDVFIDLWERKDDLNINAIEPYLFRAVKNQIFKHYQNN
RFDKTIMEDKFEDYIIDNFSTIDPEVTDLLYSLLDKLPEKRKEVLLMYKFQDMSIDQIADELGISKQTVKNQISSALKQL
REGLKDLVWLAPIVFFKQNF

Sequences:

>Translated_180_residues
MLPKLPMKNPEIFEQTYTDYWQKLNAFSYTMTQDKDLAQNIVQDVFIDLWERKDDLNINAIEPYLFRAVKNQIFKHYQNN
RFDKTIMEDKFEDYIIDNFSTIDPEVTDLLYSLLDKLPEKRKEVLLMYKFQDMSIDQIADELGISKQTVKNQISSALKQL
REGLKDLVWLAPIVFFKQNF
>Mature_180_residues
MLPKLPMKNPEIFEQTYTDYWQKLNAFSYTMTQDKDLAQNIVQDVFIDLWERKDDLNINAIEPYLFRAVKNQIFKHYQNN
RFDKTIMEDKFEDYIIDNFSTIDPEVTDLLYSLLDKLPEKRKEVLLMYKFQDMSIDQIADELGISKQTVKNQISSALKQL
REGLKDLVWLAPIVFFKQNF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21537; Mature: 21537

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPKLPMKNPEIFEQTYTDYWQKLNAFSYTMTQDKDLAQNIVQDVFIDLWERKDDLNINA
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCH
IEPYLFRAVKNQIFKHYQNNRFDKTIMEDKFEDYIIDNFSTIDPEVTDLLYSLLDKLPEK
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
RKEVLLMYKFQDMSIDQIADELGISKQTVKNQISSALKQLREGLKDLVWLAPIVFFKQNF
HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLPKLPMKNPEIFEQTYTDYWQKLNAFSYTMTQDKDLAQNIVQDVFIDLWERKDDLNINA
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCH
IEPYLFRAVKNQIFKHYQNNRFDKTIMEDKFEDYIIDNFSTIDPEVTDLLYSLLDKLPEK
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
RKEVLLMYKFQDMSIDQIADELGISKQTVKNQISSALKQLREGLKDLVWLAPIVFFKQNF
HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA