| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
Click here to switch to the map view.
The map label for this gene is 146301904
Identifier: 146301904
GI number: 146301904
Start: 4995496
End: 4997262
Strand: Reverse
Name: 146301904
Synonym: Fjoh_4168
Alternate gene names: NA
Gene position: 4997262-4995496 (Counterclockwise)
Preceding gene: 146301905
Following gene: 146301903
Centisome position: 81.96
GC content: 36.33
Gene sequence:
>1767_bases ATGAAGACAAAGACATTTTTAAGCATAAAAGTTTTAACATTATTCTCTTTTATTTTTCTTCTAAACAGCTGTACTGATCT GGATGAAGTCTTTTTAGATGAAATTCCTGGAAATACAGTTTCAGATCCTGCAGGTTCACTTGCTGCCGCTTATGACAGAT TAGGTGACGGAACTTTCGTTGATCACGGAGCCATTTTTGCCATGCAGGAATATACTACAGATGAAGCTATTTTACCAACT CGCGGAAGTGACTGGGGAGACGGAGGAAAATGGAGAGACATGCACGAATTTACATGGAGTTCTAGTAATGCAATTATTGT AGGGAACTGGGATTTATTAACAAATGGTATTACACGTTGTATAACAGCTATAGAATCGGCTGAAAAAAGTTCAATTACTG AAAAGAAATTATTTTCTGCAGAAGCAAAAGCACTTTTGGCTTTTTACACATATACCACTTTGGATTTATACGGACAAGCT CCATACAAAGATCCAATGGATCCTAAAGCTGATTTGCAAATTTTAAAAGCAGATACTCAAATCGATAAATTAATTACCGA TGTTGAGGCTTTAATTCCAGATTTAGCTGATATTGGAACGCAGAGAACTTACCACGGAAGATTTACAAAACAGGCAGCTT ATGGTTTCTTAGCTACAATGTACTTAAACCGTGCGGTGTTTAAAGACCGTTACAATGCATCATCAAATTTTAATTTTAAT GAACCGGCATTATCAGGCGGAGGAACAGATATGGATCGTGTTATTTACTACACATCATTGTTGATCGATTCAGGAAAATT TAGTTTAGAAAGTGACTATTTTAAAAACTTTGCCAGAGATAATGACAATGGTAAAGAACTTATTTTTGCGATTTCTCAAA AGATAGATTACATCCGTAATGGTTCTAACAGCTTTGCTTATGTATGTATGGAACGTAACCAAAGAACATCTGCAGCAAAC AGAGGAACAAATGCAGCTTGTACAACTCCTGAGTTTTATGCAACATGGGATGGCAATCATGACGATCCAAGATTTGAACA GCATTATCAATATGCTGATGGTACATGGTTTATGAATGATGGTACAGATGTAAGTGTTCCGGCAACAGACATTGTTCCAA AAAGTGCTAATTTACCTTGGTTCCACTTCAACAGAGGAATCCAGGCTGGACTTCAATACGGACCGATATTATTAGCTTCT GGTTCTCTTGAAATGGTAGGAAACCGTATTAAAGTTTCTCCATTGTATATGGAAAAAAGCACAGGTACAAGAATGAATTT TACACCATCATTAACGTTCTCAGATCCAACTAAATCTGTTTTTGCTCAAAATGAAATTAATCAGGGAGCTCGTGTTTTTA AATATGAATTTGACCCTGAAGGAGGAAACGGAAACAGTAATGTTGATATTCCATTATTCCGTTTAGGAGGAATTTACGCA ATGAGAGCCGAAGCTTATTTCAGAAAAGGAAATACAGGTTCTGCAATGGATGATTTAAACAAACTGCGTACAAGCAGAAA AAGAGAATCTTTATTTGGTAACGCTGCAGGAAAAGCCCTTACATCTTTAGATTCACAGCAATTATACAAAGAATTAGGTT TCGAATTATACTGGGAATTGCAAAGAAGACCACAGAGCATTCGTTTTGGAAAATACGATTTAGCAGGAACTGCAAAAGCT GCTTCACAGCCATTTAGAAGAATATTTCCAATCCCCCAAACTGTTATCGACCAAAAAGTGTTTCAACAGAACCAAGGGTA CAATTAA
Upstream 100 bases:
>100_bases TCCTAAAGCAACCGATGGTAACCAATCTATTGGAATTGATTACGCAGCTTATCCAACTTCGAGAACGTTCAGTTTTGGAG CAACTTTAAAATTATAAATT
Downstream 100 bases:
>100_bases GATTTTGTGTTAGTTTATTTTTTATTTTTTTGTAAAAAGCTTGTTTTCGGAAGAAACAGGCTTTTTCTTTTAGTTTCGGT TTGAGTTAATAAATTTATAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 588; Mature: 588
Protein sequence:
>588_residues MKTKTFLSIKVLTLFSFIFLLNSCTDLDEVFLDEIPGNTVSDPAGSLAAAYDRLGDGTFVDHGAIFAMQEYTTDEAILPT RGSDWGDGGKWRDMHEFTWSSSNAIIVGNWDLLTNGITRCITAIESAEKSSITEKKLFSAEAKALLAFYTYTTLDLYGQA PYKDPMDPKADLQILKADTQIDKLITDVEALIPDLADIGTQRTYHGRFTKQAAYGFLATMYLNRAVFKDRYNASSNFNFN EPALSGGGTDMDRVIYYTSLLIDSGKFSLESDYFKNFARDNDNGKELIFAISQKIDYIRNGSNSFAYVCMERNQRTSAAN RGTNAACTTPEFYATWDGNHDDPRFEQHYQYADGTWFMNDGTDVSVPATDIVPKSANLPWFHFNRGIQAGLQYGPILLAS GSLEMVGNRIKVSPLYMEKSTGTRMNFTPSLTFSDPTKSVFAQNEINQGARVFKYEFDPEGGNGNSNVDIPLFRLGGIYA MRAEAYFRKGNTGSAMDDLNKLRTSRKRESLFGNAAGKALTSLDSQQLYKELGFELYWELQRRPQSIRFGKYDLAGTAKA ASQPFRRIFPIPQTVIDQKVFQQNQGYN
Sequences:
>Translated_588_residues MKTKTFLSIKVLTLFSFIFLLNSCTDLDEVFLDEIPGNTVSDPAGSLAAAYDRLGDGTFVDHGAIFAMQEYTTDEAILPT RGSDWGDGGKWRDMHEFTWSSSNAIIVGNWDLLTNGITRCITAIESAEKSSITEKKLFSAEAKALLAFYTYTTLDLYGQA PYKDPMDPKADLQILKADTQIDKLITDVEALIPDLADIGTQRTYHGRFTKQAAYGFLATMYLNRAVFKDRYNASSNFNFN EPALSGGGTDMDRVIYYTSLLIDSGKFSLESDYFKNFARDNDNGKELIFAISQKIDYIRNGSNSFAYVCMERNQRTSAAN RGTNAACTTPEFYATWDGNHDDPRFEQHYQYADGTWFMNDGTDVSVPATDIVPKSANLPWFHFNRGIQAGLQYGPILLAS GSLEMVGNRIKVSPLYMEKSTGTRMNFTPSLTFSDPTKSVFAQNEINQGARVFKYEFDPEGGNGNSNVDIPLFRLGGIYA MRAEAYFRKGNTGSAMDDLNKLRTSRKRESLFGNAAGKALTSLDSQQLYKELGFELYWELQRRPQSIRFGKYDLAGTAKA ASQPFRRIFPIPQTVIDQKVFQQNQGYN >Mature_588_residues MKTKTFLSIKVLTLFSFIFLLNSCTDLDEVFLDEIPGNTVSDPAGSLAAAYDRLGDGTFVDHGAIFAMQEYTTDEAILPT RGSDWGDGGKWRDMHEFTWSSSNAIIVGNWDLLTNGITRCITAIESAEKSSITEKKLFSAEAKALLAFYTYTTLDLYGQA PYKDPMDPKADLQILKADTQIDKLITDVEALIPDLADIGTQRTYHGRFTKQAAYGFLATMYLNRAVFKDRYNASSNFNFN EPALSGGGTDMDRVIYYTSLLIDSGKFSLESDYFKNFARDNDNGKELIFAISQKIDYIRNGSNSFAYVCMERNQRTSAAN RGTNAACTTPEFYATWDGNHDDPRFEQHYQYADGTWFMNDGTDVSVPATDIVPKSANLPWFHFNRGIQAGLQYGPILLAS GSLEMVGNRIKVSPLYMEKSTGTRMNFTPSLTFSDPTKSVFAQNEINQGARVFKYEFDPEGGNGNSNVDIPLFRLGGIYA MRAEAYFRKGNTGSAMDDLNKLRTSRKRESLFGNAAGKALTSLDSQQLYKELGFELYWELQRRPQSIRFGKYDLAGTAKA ASQPFRRIFPIPQTVIDQKVFQQNQGYN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 65875; Mature: 65875
Theoretical pI: Translated: 5.29; Mature: 5.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTKTFLSIKVLTLFSFIFLLNSCTDLDEVFLDEIPGNTVSDPAGSLAAAYDRLGDGTFV CCCCEEEEHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEE DHGAIFAMQEYTTDEAILPTRGSDWGDGGKWRDMHEFTWSSSNAIIVGNWDLLTNGITRC ECCEEEEEEECCCCCCEECCCCCCCCCCCCCCCHHHHEECCCCEEEEECHHHHHHHHHHH ITAIESAEKSSITEKKLFSAEAKALLAFYTYTTLDLYGQAPYKDPMDPKADLQILKADTQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCEEEEECHHH IDKLITDVEALIPDLADIGTQRTYHGRFTKQAAYGFLATMYLNRAVFKDRYNASSNFNFN HHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC EPALSGGGTDMDRVIYYTSLLIDSGKFSLESDYFKNFARDNDNGKELIFAISQKIDYIRN CCCCCCCCCCHHHHHHHHHHHEECCCCCCCHHHHHHHHCCCCCCHHEEHHHHHHHHHHHC GSNSFAYVCMERNQRTSAANRGTNAACTTPEFYATWDGNHDDPRFEQHYQYADGTWFMND CCCCEEEEEEECCCCCHHHCCCCCCEECCCCEEEEECCCCCCCCHHHHEEECCCEEEECC GTDVSVPATDIVPKSANLPWFHFNRGIQAGLQYGPILLASGSLEMVGNRIKVSPLYMEKS CCEEECCHHHCCCCCCCCCEEEECCCHHCCCCCCCEEEECCCHHHCCCEEEEEEEEEECC TGTRMNFTPSLTFSDPTKSVFAQNEINQGARVFKYEFDPEGGNGNSNVDIPLFRLGGIYA CCCEEECCCCEEECCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEEECCCEEE MRAEAYFRKGNTGSAMDDLNKLRTSRKRESLFGNAAGKALTSLDSQQLYKELGFELYWEL EEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHCHHEEHHH QRRPQSIRFGKYDLAGTAKAASQPFRRIFPIPQTVIDQKVFQQNQGYN HCCCCCCCCCCCCCCCCHHHHHCCHHHHCCCCHHHHHHHHHHHCCCCC >Mature Secondary Structure MKTKTFLSIKVLTLFSFIFLLNSCTDLDEVFLDEIPGNTVSDPAGSLAAAYDRLGDGTFV CCCCEEEEHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEE DHGAIFAMQEYTTDEAILPTRGSDWGDGGKWRDMHEFTWSSSNAIIVGNWDLLTNGITRC ECCEEEEEEECCCCCCEECCCCCCCCCCCCCCCHHHHEECCCCEEEEECHHHHHHHHHHH ITAIESAEKSSITEKKLFSAEAKALLAFYTYTTLDLYGQAPYKDPMDPKADLQILKADTQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCEEEEECHHH IDKLITDVEALIPDLADIGTQRTYHGRFTKQAAYGFLATMYLNRAVFKDRYNASSNFNFN HHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC EPALSGGGTDMDRVIYYTSLLIDSGKFSLESDYFKNFARDNDNGKELIFAISQKIDYIRN CCCCCCCCCCHHHHHHHHHHHEECCCCCCCHHHHHHHHCCCCCCHHEEHHHHHHHHHHHC GSNSFAYVCMERNQRTSAANRGTNAACTTPEFYATWDGNHDDPRFEQHYQYADGTWFMND CCCCEEEEEEECCCCCHHHCCCCCCEECCCCEEEEECCCCCCCCHHHHEEECCCEEEECC GTDVSVPATDIVPKSANLPWFHFNRGIQAGLQYGPILLASGSLEMVGNRIKVSPLYMEKS CCEEECCHHHCCCCCCCCCEEEECCCHHCCCCCCCEEEECCCHHHCCCEEEEEEEEEECC TGTRMNFTPSLTFSDPTKSVFAQNEINQGARVFKYEFDPEGGNGNSNVDIPLFRLGGIYA CCCEEECCCCEEECCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEEECCCEEE MRAEAYFRKGNTGSAMDDLNKLRTSRKRESLFGNAAGKALTSLDSQQLYKELGFELYWEL EEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHCHHEEHHH QRRPQSIRFGKYDLAGTAKAASQPFRRIFPIPQTVIDQKVFQQNQGYN HCCCCCCCCCCCCCCCCHHHHHCCHHHHCCCCHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA