Click here to switch to the map view.

The map label for this gene is ydeJ [C]

Identifier: 146301898

GI number: 146301898

Start: 4991676

End: 4992149

Strand: Reverse

Name: ydeJ [C]

Synonym: Fjoh_4162

Alternate gene names: 146301898

Gene position: 4992149-4991676 (Counterclockwise)

Preceding gene: 146301902

Following gene: 146301897

Centisome position: 81.88

GC content: 37.55

Gene sequence:

>474_bases
ATGGCTTCTGATAAAGTAACCGCCTGCTGCCAAGCTCTGATTAAAAAAAATCTTACCATAACATTTGTAGAAAGCGCATC
GGCAGGAAAAATGAGTTATGAATTCTCGACAGTTTTTAATTCCGGACGAATATTAATAGGAGGAATGGTGTGTTATCATT
CTTCAATGAAAGAAGATCTGCTTCATATTCCGTGGGGAACAATCGAAAAATACAGTGCAGAATCTGAAGAAGTGACCAAA
CTTATGGCACAGAATTTTTATCGTTACATGAATTCAGATATCTGCGTTGCCTTAACCGGACTTACAACTCCAGGCGGAAG
TGAAAACGAAGAAAAGCCCGTTGGAACCATTTTTGTTCATATCATTTTTTCGGATAAAGAAACAGCGCGTCGTTTTGAAT
TTACTGGAAATCCCGAAAGTATAATTAATCAGGCAATTGATGCAGCAGCTGAATTGATTTTGGAAGGAATTTAA

Upstream 100 bases:

>100_bases
TACTTATAATATAATAACTGTAAGAAATTATGTAAGTTTCATTTCTGCAATCCATTTTAAATTTGATTAGTAAAATTGTT
TAACTAAAACAAAATAGAAA

Downstream 100 bases:

>100_bases
AAGTATATTTTTAATGTAGGATTATTATTTCAAAAATAATACTTTTGTAAAAGTTTTAAAATTAAAAAATATGGGAATGA
TAGCTGAATATTTGATGGTT

Product: CinA domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 156

Protein sequence:

>157_residues
MASDKVTACCQALIKKNLTITFVESASAGKMSYEFSTVFNSGRILIGGMVCYHSSMKEDLLHIPWGTIEKYSAESEEVTK
LMAQNFYRYMNSDICVALTGLTTPGGSENEEKPVGTIFVHIIFSDKETARRFEFTGNPESIINQAIDAAAELILEGI

Sequences:

>Translated_157_residues
MASDKVTACCQALIKKNLTITFVESASAGKMSYEFSTVFNSGRILIGGMVCYHSSMKEDLLHIPWGTIEKYSAESEEVTK
LMAQNFYRYMNSDICVALTGLTTPGGSENEEKPVGTIFVHIIFSDKETARRFEFTGNPESIINQAIDAAAELILEGI
>Mature_156_residues
ASDKVTACCQALIKKNLTITFVESASAGKMSYEFSTVFNSGRILIGGMVCYHSSMKEDLLHIPWGTIEKYSAESEEVTKL
MAQNFYRYMNSDICVALTGLTTPGGSENEEKPVGTIFVHIIFSDKETARRFEFTGNPESIINQAIDAAAELILEGI

Specific function: Unknown

COG id: COG1546

COG function: function code R; Uncharacterized protein (competence- and mitomycin-induced)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CinA family [H]

Homologues:

Organism=Escherichia coli, GI1787818, Length=140, Percent_Identity=26.4285714285714, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008136
- InterPro:   IPR008135
- InterPro:   IPR001453 [H]

Pfam domain/function: PF02464 CinA; PF00994 MoCF_biosynth [H]

EC number: NA

Molecular weight: Translated: 17277; Mature: 17146

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASDKVTACCQALIKKNLTITFVESASAGKMSYEFSTVFNSGRILIGGMVCYHSSMKEDL
CCCCHHHHHHHHHHHCCCEEEEEECCCCCCEEEEHHHHHCCCCEEEEHHHHHHHHHHHHH
LHIPWGTIEKYSAESEEVTKLMAQNFYRYMNSDICVALTGLTTPGGSENEEKPVGTIFVH
EECCCCCCHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCEEEEEE
IIFSDKETARRFEFTGNPESIINQAIDAAAELILEGI
EEECCCHHHHEEECCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ASDKVTACCQALIKKNLTITFVESASAGKMSYEFSTVFNSGRILIGGMVCYHSSMKEDL
CCCHHHHHHHHHHHCCCEEEEEECCCCCCEEEEHHHHHCCCCEEEEHHHHHHHHHHHHH
LHIPWGTIEKYSAESEEVTKLMAQNFYRYMNSDICVALTGLTTPGGSENEEKPVGTIFVH
EECCCCCCHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCEEEEEE
IIFSDKETARRFEFTGNPESIINQAIDAAAELILEGI
EEECCCHHHHEEECCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA