| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
Click here to switch to the map view.
The map label for this gene is sglT [H]
Identifier: 146301848
GI number: 146301848
Start: 4940166
End: 4941746
Strand: Reverse
Name: sglT [H]
Synonym: Fjoh_4112
Alternate gene names: 146301848
Gene position: 4941746-4940166 (Counterclockwise)
Preceding gene: 146301849
Following gene: 146301847
Centisome position: 81.05
GC content: 38.52
Gene sequence:
>1581_bases ATGAACAGCATCTACGATAAATTAACCACGCTCGATTTTGTAATTGTAGCGGGTTATTTGGTGGCTTTATTGGTCATTGG ATATGTGGTAAGTATGAAGCAGAGAAATAAAAACGAAACGCTTTTTCTGGCCGGAAATTCATTAAACTGGTACAGCATCG GGTTTAATATGTGGGGAACCAACGTTGGGCCTTCGTCATTATTGGCTTTTGCGAGTATTGGTTACGCTACGGGAATTGTA GCGGGAAATTTCGAATGGTACGCATTTGTGTTTTTACTGCTTTTGGCAATGGTTTTTGCACCAAGATATATTGCGAGTAA AGTCAGCACAATGCCTGAATATATGGGAAAACGCTACGGCGATAGTACGCAGAATATTTTGGCTTGGTATGCTTTGGTAA AAATATTAGTAAGCTGGTTGTCTTTAGGATTATTCAGCGGAGGCGTTTTAGTACGTCAGATTTTGGGAATTCCAATGTGG CAGAGCGTTACGGTTTTAGTAATTTTCTCTGGAATATTTACGTTTGCTGGAGGATTAAAAGCGATTGCAAAAGTGAATGT TTTTCAAATGATTCTGCTGATTGTCGTTTCGCTTACACTTTCCTTTCTAGGCTTGCAGAAACTAGGCGGAATCGATGTTT TAATCGCCAAAACACCTTCTAATTTTTGGAATTTAGTCCGTCCTTCAGATGATGCGCATTATCCGTGGCCTGCTATTTTG TTGGGATATCCTGTTGCTGCAGTTGCTTTTTTCTGTACCGATCAATCGATGGTGCAGAGTGTTTTAGGTGCGAAAAACCT AGAGCAGGGACAATTAGGAGTAAACTTTATAGGATGGTTAAAAGTGATGGCGTTGCCGTTGTTTATTCTTCCCGGAATTT TGTGTTATGCCTTATATCCAGAATTAGGAAGCAATTCTGATTTGGCTTATATGACAATGGTTACGAATCTTTTCCCAAGC GGAATGAACGGTTTGGTAATCTGTGTTATGATTGCGGTTTTGGTGGGAACAATTGGTTCTTCGTTAAACGCTTTGAGCAC CGTTTTTACGAATGATATTTATGTAAAGAAAATAAACCCGACGGCGACGATTCAGGATCAGATTAAAATTGGACGCTTAA CAATTGCTGCTGGATGCGTTTTTGCGATTTTAATCGCCGTTGCGATAGACAATATCAAAGGGCAGAATTTATTCAACATT TTTCAGGCAGTTTTAGGTTTCCTGGCGCCTTCGTTATCTGTTGTTTTCCTTTTGAGTGTTTTCTGGAAACGCACCACTAA AAAAGCCGTAAATGCAACGCTTTCTTGGGGTTCTGCATTTAGTTTGTTTGTTGGAGTTTTATATTTATGGATTTTCCCTG CCGATAAATATCCAGTTTGGCCTCACTTTTTATTGATTTCGTTTTACATTTTTGCGGTGCTTTTAATTACAGCCGTTATT ATTTCTTTAACCGATAAAAACCCTGAAGTTAATGTTTCAGATGAAACGGATATTCCTAAAACTAGCAAAAAGGTGAAGCT TTTGTTTGGTTTGCTGGGATTGACAATTTTGGTTTTGTATTTGGTTTTTAATGGAAATTAA
Upstream 100 bases:
>100_bases AAGAAGGAATTGGAACCGTGGCTTTGTTACAAGCAATGGATAAATCTTTGCAAACTGGAATGCCGGTTAAAATTGCCGAT ATTCTTAACGAATACGGGCT
Downstream 100 bases:
>100_bases ATTTTCTTCAAACTCTTATAATTTTAGAAACGCTTCTTTGATAAAAGGAAGCGTTTTTTTTTTGCTTTTTAAAAATTTTT CACACATTATAATAATTTAA
Product: SSS family solute/sodium (Na+) symporter
Products: NA
Alternate protein names: Na(+)/glucose symporter [H]
Number of amino acids: Translated: 526; Mature: 526
Protein sequence:
>526_residues MNSIYDKLTTLDFVIVAGYLVALLVIGYVVSMKQRNKNETLFLAGNSLNWYSIGFNMWGTNVGPSSLLAFASIGYATGIV AGNFEWYAFVFLLLLAMVFAPRYIASKVSTMPEYMGKRYGDSTQNILAWYALVKILVSWLSLGLFSGGVLVRQILGIPMW QSVTVLVIFSGIFTFAGGLKAIAKVNVFQMILLIVVSLTLSFLGLQKLGGIDVLIAKTPSNFWNLVRPSDDAHYPWPAIL LGYPVAAVAFFCTDQSMVQSVLGAKNLEQGQLGVNFIGWLKVMALPLFILPGILCYALYPELGSNSDLAYMTMVTNLFPS GMNGLVICVMIAVLVGTIGSSLNALSTVFTNDIYVKKINPTATIQDQIKIGRLTIAAGCVFAILIAVAIDNIKGQNLFNI FQAVLGFLAPSLSVVFLLSVFWKRTTKKAVNATLSWGSAFSLFVGVLYLWIFPADKYPVWPHFLLISFYIFAVLLITAVI ISLTDKNPEVNVSDETDIPKTSKKVKLLFGLLGLTILVLYLVFNGN
Sequences:
>Translated_526_residues MNSIYDKLTTLDFVIVAGYLVALLVIGYVVSMKQRNKNETLFLAGNSLNWYSIGFNMWGTNVGPSSLLAFASIGYATGIV AGNFEWYAFVFLLLLAMVFAPRYIASKVSTMPEYMGKRYGDSTQNILAWYALVKILVSWLSLGLFSGGVLVRQILGIPMW QSVTVLVIFSGIFTFAGGLKAIAKVNVFQMILLIVVSLTLSFLGLQKLGGIDVLIAKTPSNFWNLVRPSDDAHYPWPAIL LGYPVAAVAFFCTDQSMVQSVLGAKNLEQGQLGVNFIGWLKVMALPLFILPGILCYALYPELGSNSDLAYMTMVTNLFPS GMNGLVICVMIAVLVGTIGSSLNALSTVFTNDIYVKKINPTATIQDQIKIGRLTIAAGCVFAILIAVAIDNIKGQNLFNI FQAVLGFLAPSLSVVFLLSVFWKRTTKKAVNATLSWGSAFSLFVGVLYLWIFPADKYPVWPHFLLISFYIFAVLLITAVI ISLTDKNPEVNVSDETDIPKTSKKVKLLFGLLGLTILVLYLVFNGN >Mature_526_residues MNSIYDKLTTLDFVIVAGYLVALLVIGYVVSMKQRNKNETLFLAGNSLNWYSIGFNMWGTNVGPSSLLAFASIGYATGIV AGNFEWYAFVFLLLLAMVFAPRYIASKVSTMPEYMGKRYGDSTQNILAWYALVKILVSWLSLGLFSGGVLVRQILGIPMW QSVTVLVIFSGIFTFAGGLKAIAKVNVFQMILLIVVSLTLSFLGLQKLGGIDVLIAKTPSNFWNLVRPSDDAHYPWPAIL LGYPVAAVAFFCTDQSMVQSVLGAKNLEQGQLGVNFIGWLKVMALPLFILPGILCYALYPELGSNSDLAYMTMVTNLFPS GMNGLVICVMIAVLVGTIGSSLNALSTVFTNDIYVKKINPTATIQDQIKIGRLTIAAGCVFAILIAVAIDNIKGQNLFNI FQAVLGFLAPSLSVVFLLSVFWKRTTKKAVNATLSWGSAFSLFVGVLYLWIFPADKYPVWPHFLLISFYIFAVLLITAVI ISLTDKNPEVNVSDETDIPKTSKKVKLLFGLLGLTILVLYLVFNGN
Specific function: Actively transports glucose into cells by Na(+) cotransport [H]
COG id: COG4146
COG function: function code R; Predicted symporter
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family [H]
Homologues:
Organism=Homo sapiens, GI17941285, Length=452, Percent_Identity=29.8672566371681, Blast_Score=217, Evalue=2e-56, Organism=Homo sapiens, GI110835708, Length=466, Percent_Identity=31.3304721030043, Blast_Score=213, Evalue=5e-55, Organism=Homo sapiens, GI4507031, Length=530, Percent_Identity=28.3018867924528, Blast_Score=209, Evalue=6e-54, Organism=Homo sapiens, GI206597483, Length=504, Percent_Identity=31.7460317460317, Blast_Score=205, Evalue=9e-53, Organism=Homo sapiens, GI4507033, Length=466, Percent_Identity=30.68669527897, Blast_Score=205, Evalue=9e-53, Organism=Homo sapiens, GI14140236, Length=534, Percent_Identity=25.8426966292135, Blast_Score=197, Evalue=3e-50, Organism=Homo sapiens, GI206597487, Length=529, Percent_Identity=30.2457466918715, Blast_Score=191, Evalue=1e-48, Organism=Homo sapiens, GI109659836, Length=482, Percent_Identity=30.2904564315353, Blast_Score=190, Evalue=2e-48, Organism=Homo sapiens, GI109659839, Length=498, Percent_Identity=29.3172690763052, Blast_Score=184, Evalue=2e-46, Organism=Homo sapiens, GI157671931, Length=367, Percent_Identity=22.8882833787466, Blast_Score=69, Evalue=9e-12, Organism=Homo sapiens, GI167466278, Length=359, Percent_Identity=20.6128133704735, Blast_Score=69, Evalue=1e-11, Organism=Escherichia coli, GI1790113, Length=424, Percent_Identity=26.4150943396226, Blast_Score=143, Evalue=2e-35, Organism=Caenorhabditis elegans, GI32566512, Length=363, Percent_Identity=22.8650137741047, Blast_Score=66, Evalue=6e-11, Organism=Drosophila melanogaster, GI28574994, Length=375, Percent_Identity=23.7333333333333, Blast_Score=70, Evalue=3e-12, Organism=Drosophila melanogaster, GI28573698, Length=445, Percent_Identity=22.0224719101124, Blast_Score=69, Evalue=6e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001734 - InterPro: IPR018212 - InterPro: IPR019900 [H]
Pfam domain/function: PF00474 SSF [H]
EC number: NA
Molecular weight: Translated: 57546; Mature: 57546
Theoretical pI: Translated: 9.52; Mature: 9.52
Prosite motif: PS50283 NA_SOLUT_SYMP_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSIYDKLTTLDFVIVAGYLVALLVIGYVVSMKQRNKNETLFLAGNSLNWYSIGFNMWGT CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEEEECCC NVGPSSLLAFASIGYATGIVAGNFEWYAFVFLLLLAMVFAPRYIASKVSTMPEYMGKRYG CCCHHHHHHHHHHHHHHCEEECCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCC DSTQNILAWYALVKILVSWLSLGLFSGGVLVRQILGIPMWQSVTVLVIFSGIFTFAGGLK CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH AIAKVNVFQMILLIVVSLTLSFLGLQKLGGIDVLIAKTPSNFWNLVRPSDDAHYPWPAIL HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHCCCCCCCCCCCCCHHHH LGYPVAAVAFFCTDQSMVQSVLGAKNLEQGQLGVNFIGWLKVMALPLFILPGILCYALYP HHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC ELGSNSDLAYMTMVTNLFPSGMNGLVICVMIAVLVGTIGSSLNALSTVFTNDIYVKKINP CCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEECCC TATIQDQIKIGRLTIAAGCVFAILIAVAIDNIKGQNLFNIFQAVLGFLAPSLSVVFLLSV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH FWKRTTKKAVNATLSWGSAFSLFVGVLYLWIFPADKYPVWPHFLLISFYIFAVLLITAVI HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH ISLTDKNPEVNVSDETDIPKTSKKVKLLFGLLGLTILVLYLVFNGN HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MNSIYDKLTTLDFVIVAGYLVALLVIGYVVSMKQRNKNETLFLAGNSLNWYSIGFNMWGT CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEEEECCC NVGPSSLLAFASIGYATGIVAGNFEWYAFVFLLLLAMVFAPRYIASKVSTMPEYMGKRYG CCCHHHHHHHHHHHHHHCEEECCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCC DSTQNILAWYALVKILVSWLSLGLFSGGVLVRQILGIPMWQSVTVLVIFSGIFTFAGGLK CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH AIAKVNVFQMILLIVVSLTLSFLGLQKLGGIDVLIAKTPSNFWNLVRPSDDAHYPWPAIL HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHCCCCCCCCCCCCCHHHH LGYPVAAVAFFCTDQSMVQSVLGAKNLEQGQLGVNFIGWLKVMALPLFILPGILCYALYP HHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC ELGSNSDLAYMTMVTNLFPSGMNGLVICVMIAVLVGTIGSSLNALSTVFTNDIYVKKINP CCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEECCC TATIQDQIKIGRLTIAAGCVFAILIAVAIDNIKGQNLFNIFQAVLGFLAPSLSVVFLLSV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH FWKRTTKKAVNATLSWGSAFSLFVGVLYLWIFPADKYPVWPHFLLISFYIFAVLLITAVI HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH ISLTDKNPEVNVSDETDIPKTSKKVKLLFGLLGLTILVLYLVFNGN HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8652595; 10835424; 10757971 [H]