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The map label for this gene is yeaM [H]

Identifier: 146301842

GI number: 146301842

Start: 4934550

End: 4935368

Strand: Reverse

Name: yeaM [H]

Synonym: Fjoh_4106

Alternate gene names: 146301842

Gene position: 4935368-4934550 (Counterclockwise)

Preceding gene: 146301846

Following gene: 146301841

Centisome position: 80.95

GC content: 35.29

Gene sequence:

>819_bases
ATGAATAGTCAATATCGGACATATAGAGTAGCAACGGATTTTGGATATCAAGTAGATTCCTCAATCCCGGTTATAGGTTA
TACTGAAACAGTTAACAACGAAATGTGTATCTCCCATTCGCATCCAAGAGCTCAATTGATCTATGCAACTCGTGGCGTAA
TGAATGTTGTGGTCGGCAATAACATTTGGGTTGTAAATCCGTTGCAAGGCCTTTGGATTCCAAGCGGAGTAGAGCATCAG
GTTACTTTTCAGAAAGACGTTAACTATTACAGTGTTTTTATTGATCCTTCTGCAATTGGAGGATTGCCAGAAAAGAGTTT
TTCGTTTGATATTCCGATGTTTTTAAAGCAGTTGGTTTTCAAAATTATTTCTTTTGGAACAAGTGGTAACTTAACAGAAT
CACAATTAAGGATCATTTATGTCTTTTTAGATGAACTGGCTTTAATAGTGCCAAGCGCCACTTTTTTGCCTACTACAAAT
GATGAAAGGCTGCAGAAAGTGGTAGAACTTTTAATGAGTGATGTTTCGAGTAAACAAACAATTGATTATTATGCCGAACT
TTCTTTTATGAGTAGCCGAACTTTATCACGATTATTCATAAAAGAATTGGGAATGAATTTCAGCGATTGGCGCACCAGAA
TGAAATTACTGGAAGCCATTAAAAGATTGGGCGAAAAACAATCCATAAAAGAAATTGCTTTAGATTTAGGTTACGAAACA
GCTAGTGCTTTTATTTATATGTTCAAAAAGCATTTGGGCAAAACGCCTTCTAACTATATTTTAGAAGATGAAAATGAATC
TGAAAAGATGATTGCTTAG

Upstream 100 bases:

>100_bases
AGATATTTTTTGATTTTTAAATTAGGTTAAAAAACAACAGCTGTATTATTTTTTGCAAAGATTAAAAGAATAGTAATGTC
AGAATTGCTATATTTGGACA

Downstream 100 bases:

>100_bases
ATTGTTAGCCTAAATTAGAACGCGGATAAAACGGATTTACTTCGTAAAGACGTGGATTGACACGGATTTTTTAAACACAT
AGAAACATAGATTTTTATTT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MNSQYRTYRVATDFGYQVDSSIPVIGYTETVNNEMCISHSHPRAQLIYATRGVMNVVVGNNIWVVNPLQGLWIPSGVEHQ
VTFQKDVNYYSVFIDPSAIGGLPEKSFSFDIPMFLKQLVFKIISFGTSGNLTESQLRIIYVFLDELALIVPSATFLPTTN
DERLQKVVELLMSDVSSKQTIDYYAELSFMSSRTLSRLFIKELGMNFSDWRTRMKLLEAIKRLGEKQSIKEIALDLGYET
ASAFIYMFKKHLGKTPSNYILEDENESEKMIA

Sequences:

>Translated_272_residues
MNSQYRTYRVATDFGYQVDSSIPVIGYTETVNNEMCISHSHPRAQLIYATRGVMNVVVGNNIWVVNPLQGLWIPSGVEHQ
VTFQKDVNYYSVFIDPSAIGGLPEKSFSFDIPMFLKQLVFKIISFGTSGNLTESQLRIIYVFLDELALIVPSATFLPTTN
DERLQKVVELLMSDVSSKQTIDYYAELSFMSSRTLSRLFIKELGMNFSDWRTRMKLLEAIKRLGEKQSIKEIALDLGYET
ASAFIYMFKKHLGKTPSNYILEDENESEKMIA
>Mature_272_residues
MNSQYRTYRVATDFGYQVDSSIPVIGYTETVNNEMCISHSHPRAQLIYATRGVMNVVVGNNIWVVNPLQGLWIPSGVEHQ
VTFQKDVNYYSVFIDPSAIGGLPEKSFSFDIPMFLKQLVFKIISFGTSGNLTESQLRIIYVFLDELALIVPSATFLPTTN
DERLQKVVELLMSDVSSKQTIDYYAELSFMSSRTLSRLFIKELGMNFSDWRTRMKLLEAIKRLGEKQSIKEIALDLGYET
ASAFIYMFKKHLGKTPSNYILEDENESEKMIA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=224, Percent_Identity=33.0357142857143, Blast_Score=137, Evalue=8e-34,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 31027; Mature: 31027

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSQYRTYRVATDFGYQVDSSIPVIGYTETVNNEMCISHSHPRAQLIYATRGVMNVVVGN
CCCCCEEEEEEECCCEEECCCCCEEEEHCCCCCCEEEECCCCCEEEEEEHHCEEEEEECC
NIWVVNPLQGLWIPSGVEHQVTFQKDVNYYSVFIDPSAIGGLPEKSFSFDIPMFLKQLVF
CEEEECCCCCCCCCCCCCEEEEEEECCCEEEEEECHHHHCCCCCCCCCCCHHHHHHHHHH
KIISFGTSGNLTESQLRIIYVFLDELALIVPSATFLPTTNDERLQKVVELLMSDVSSKQT
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHCCCCCH
IDYYAELSFMSSRTLSRLFIKELGMNFSDWRTRMKLLEAIKRLGEKQSIKEIALDLGYET
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHH
ASAFIYMFKKHLGKTPSNYILEDENESEKMIA
HHHHHHHHHHHHCCCCCCCEECCCCCCCCCCC
>Mature Secondary Structure
MNSQYRTYRVATDFGYQVDSSIPVIGYTETVNNEMCISHSHPRAQLIYATRGVMNVVVGN
CCCCCEEEEEEECCCEEECCCCCEEEEHCCCCCCEEEECCCCCEEEEEEHHCEEEEEECC
NIWVVNPLQGLWIPSGVEHQVTFQKDVNYYSVFIDPSAIGGLPEKSFSFDIPMFLKQLVF
CEEEECCCCCCCCCCCCCEEEEEEECCCEEEEEECHHHHCCCCCCCCCCCHHHHHHHHHH
KIISFGTSGNLTESQLRIIYVFLDELALIVPSATFLPTTNDERLQKVVELLMSDVSSKQT
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHCCCCCH
IDYYAELSFMSSRTLSRLFIKELGMNFSDWRTRMKLLEAIKRLGEKQSIKEIALDLGYET
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHH
ASAFIYMFKKHLGKTPSNYILEDENESEKMIA
HHHHHHHHHHHHCCCCCCCEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]